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Airflows and turbulent flux measurements in mountainous terrain: Part 2: Mesoscale effects

The location of the Niwot Ridge Ameriflux site within the rocky mountains subjects it to airflows which are common in mountainous terrain. In this study, we examine the effects of some of these mesoscale features on local turbulent flux measurements; most notably, the formation of valley/mountain flows and mountain lee-side waves. The valley/mountain flows created local non-stationarities in the wind flow caused by the passage of a lee-side convergence zone (LCZ) in which upslope and downslope flows met in the vicinity of the measurement tower. During June–August, 2001, possible lee-side convergences were flagged for ∼26% of all half-hour daytime flux measurement periods. However, there was no apparent loss of flux during these periods. On some relatively stable, summer nights, turbulence (designated via σ w ), and scalar fluctuations (temperature and CO 2 , for example) exhibited periodicities that appeared congruent with passage of low frequency gravity waves ( τ ∼ 20 min). Spectral peaks at 0.0008 Hz (20 min) in both vertical velocity and scalar spectra were observed and indicated that 25–50% of the total scalar covariances were accounted for by the low frequency waves. During some periods of strong westerly winds (predominantly in winter), large mountain gravity waves were observed to form. Typically, the flux tower resided within a region of downslope “shooting flow”, which created high turbulence, but had no detrimental effect on local flux measurements based on valid turbulence statistics and nearly complete energy budget closure. Periodically, we found evidence for re-circulating, rotor winds in the simultaneous time series of wind data from the Ameriflux tower site and a second meteorological site situated 8 km upslope and to the West. Only 14% of the half-hour time periods that we examined for a 4 month period in the winter of 2000–2001 indicated the possible existence of rotor winds. On average, energy budget closure was ∼20% less during periods with rotor occurrence compared to those without. Results from this study demonstrate that the potential exists for relatively rare, yet significant influences of mesoscale wind flow patterns on the local half-hour flux measurements at this site. Occurrence of these events could be detected through examination of normal turbulence statistical parameters.

Agricultural and Forest Meteorology↗

Use of the Priestley-Taylor evaporation equation for soil water limited conditions in a small forest clearcut

The Priestley-Taylor equation, a simplification of the Penman equation, was used to allow calculations of evapotranspiration under conditions where soil water supply limits evapotranspiration. The Priestley-Taylor coefficient, α, was calculated to incorporate an exponential decrease in evapotranspiration as soil water content decreases. The method is appropriate for use when detailed meteorological measurements are not available. The data required to determine the parameter for the α coefficient are net radiation, soil heat flux, average air temperature, and soil water content. These values can be obtained from measurements or models. The dataset used in this report pertains to a partially vegetated clearcut forest site in southwest Oregon with soil depths ranging from 0.48 to 0.70 m and weathered bedrock below that. Evapotranspiration was estimated using the Bowen ratio method, and the calculated Priestley-Taylor coefficient was fitted to these estimates by nonlinear regression. The calculated Priestley-Taylor coefficient (α′) was found to be approximately 0.9 when the soil was near field capacity (0.225 cm 3 cm −3 ). It was not until soil water content was less than 0.14 cm 3 cm −3 that soil water supply limited evapotranspiration. The soil reached a final residual water content near 0.05 cm 3 cm −3 at the end of the growing season.

Agricultural and Forest Meteorology↗

Assessing the evolution of soil moisture and vegetation conditions during the 2012 United States flash drought

This study examines the evolution of several model-based and satellite-derived drought metrics sensitive to soil moisture and vegetation conditions during the extreme flash drought event that impacted major agricultural areas across the central U.S. during 2012. Standardized anomalies from the remote sensing based Evaporative Stress Index (ESI) and Vegetation Drought Response Index (VegDRI) and soil moisture anomalies from the North American Land Data Assimilation System (NLDAS) are compared to the United States Drought Monitor (USDM), surface meteorological conditions, and crop and soil moisture data compiled by the National Agricultural Statistics Service (NASS). Overall, the results show that rapid decreases in the ESI and NLDAS anomalies often preceded drought intensification in the USDM by up to 6 wk depending on the region. Decreases in the ESI tended to occur up to several weeks before deteriorations were observed in the crop condition datasets. The NLDAS soil moisture anomalies were similar to those depicted in the NASS soil moisture datasets; however, some differences were noted in how each model responded to the changing drought conditions. The VegDRI anomalies tracked the evolution of the USDM drought depiction in regions with slow drought development, but lagged the USDM and other drought indicators when conditions were changing rapidly. Comparison to the crop condition datasets revealed that soybean conditions were most similar to ESI anomalies computed over short time periods (2–4 wk), whereas corn conditions were more closely related to longer-range (8–12 wk) ESI anomalies. Crop yield departures were consistent with the drought severity depicted by the ESI and to a lesser extent by the NLDAS and VegDRI datasets.

Agricultural and Forest Meteorology↗

Development of a benchmark eddy flux evapotranspiration dataset for evaluation of satellite-driven evapotranspiration models over the CONUS

A large sample of ground-based evapotranspiration (ET) measurements made in the United States, primarily from eddy covariance systems, were post-processed to produce a benchmark ET dataset. The dataset was produced primarily to support the intercomparison and evaluation of the OpenET satellite-based remote sensing ET (RSET) models and could also be used to evaluate ET data from other models and approaches. OpenET is a web-based service that makes field-delineated and pixel-level ET estimates from well-established RSET models readily available to water managers, agricultural producers, and the public. The benchmark dataset is composed of flux and meteorological data from a variety of providers covering native vegetation and agricultural settings. Flux footprint predictions were developed for each station and included static flux footprints developed based on average wind direction and speed, as well as dynamic hourly footprints that were generated with a physically based model of upwind source area. The two footprint prediction methods were rigorously compared to evaluate their relative spatial coverage. Data from all sources were post-processed in a consistent and reproducible manner including data handling, gap-filling, temporal aggregation, and energy balance closure correction. The resulting dataset included 243,048 daily and 5,284 monthly ET values from 194 stations, with all data falling between 1995 and 2021. We assessed average daily energy imbalance using 172 flux sites with a total of 193,021 days of data, finding that overall turbulent fluxes were understated by about 12% on average relative to available energy. Multiple linear regression analyses indicated that daily average latent energy flux may be typically understated slightly more than sensible heat flux. This dataset was developed to provide a consistent reference to support evaluation of RSET data being developed for a wide range of applications related to water accounting and water resources management at field to watershed scales.

continental United States↗

Calculation of solar radiation in mountainous terrain

A study was performed to assess the accuracy of a daily solar radiation model for horizontal or sloping sites in terrain where surrounding ridges and tall trees block both direct beam and diffuse sky short wave radiation. To simulate adequately the major effects of these environments on radiation, the model incorporated (1) standard treatment of solar geometry (after Harris, 1983); (2) separation of direct and diffuse radiation by considering scattering and absorption due to aerosols, water vapor, air molecules and ozone (after Iqbal, 1983); (3) anisotropy of diffuse radiation modeled as a circumsolar component (15–50% of the total clear sky diffuse) plus an isotropic background; and (4) proper calculation of the proportions of sky radiation and ground reflected radiation sensed by both horizontal and inclined sensors. The model was calibrated using data from both horizontal and inclined pyranometers at six sites over four years. Values for the Ångstrom turbidity coefficient and the percentage of circumsolar diffuse radiation were determined using an iterative best fit technique. Mean monthly values of these coefficients and mean monthly ozone and water vapor concentrations from nearby weather service stations could be used for predicting total, cloud free, daily radiation with acceptable accuracy. Required site measurements include slope, aspect, latitude, longitude, date, time, effective horizon for the site, and an assessment of albedo for the surrounding terrain (including vegetation).

Agricultural and Forest Meteorology↗

Determination of sensible heat flux over sparse canopy using thermal infrared data

Surface temperatures, T s , were estimated for a natural vegetative surface in Owens Valley, California, with infrared thermometric observations collected from an aircraft. The region is quite arid and is composed primarily of bushes (∼30%) and bare soil (∼70%). Application of the bulk transfer equation for the estimation of sensible heat, H , gave unsatisfactory values when compared to Bowen ratio and eddy correlation methods over a particular site. This was attributed to the inability with existing data to properly evaluate the resistance to heat transfer, r ah . To obtain appropriate r ah -values the added resistance to heat transfer, kB −1 , was allowed to vary although there is both theoretical and experimental evidence that kB −1 for vegetative surfaces can be treated as constant. The present data indicate that for partial canopy cover under arid conditions kB −1 may be a function of T s measured radiometrically. The equation determining kB −1 was simplified and tested over another arid site with good results; however, this had a limited data set (i.e., 6 data points). The dimensionless kB −1 equation is simplified for use over full canopy cover and is shown to give satisfactory estimates of H over a fully-grown wheat crop.

Agricultural and Forest Meteorology↗

Energy budgets and resistances to energy transport in sparsely vegetated rangeland

Partitioning available energy between plants and bare soil in sparsely vegetated rangelands will allow hydrologists and others to gain a greater understanding of water use by native vegetation, especially phreatophytes. Standard methods of conducting energy budget studies result in measurements of latent and sensible heat fluxes above the plant canopy which therefore include the energy fluxes from both the canopy and the soil. One-dimensional theoretical numerical models have been proposed recently for the partitioning of energy in sparse crops. Bowen ratio and other micrometeorological data collected over phreatophytes growing in areas of shallow ground water in central Nevada were used to evaluate the feasibility of using these models, which are based on surface and within-canopy aerodynamic resistances, to determine heat and water vapor transport in sparsely vegetated rangelands. The models appear to provide reasonably good estimates of sensible heat flux from the soil and latent heat flux from the canopy. Estimates of latent heat flux from the soil were less satisfactory. Sensible heat flux from the canopy was not well predicted by the present resistance formulations. Also, estimates of total above-canopy fluxes were not satisfactory when using a single value for above-canopy bulk aerodynamic resistance.

Agricultural and Forest Meteorology↗

Further discussions on the relationship between cumulated intercepted solar radiation and crop growth

A strong correlation exists between intercepted solar radiation and crop growth. We cautioned that many derivations of the functional relationship between solar energy and biomass use cumulated data, and therefore have logical and arithmetic weaknesses. We examined the growth response of plants to solar energy by using rates of change, of both interception and growth. Our analysis revealed that measurements of light interception can only establish the relationship a posteriori. Replacing interception data with normalized random numbers did not change the quality of the relations. Several scientists have contested our views. This article reconfirms the general validity of our analysis and of our conclusions, that it is not possible to determine plant growth on the sole basis of intercepted solar energy.

Agricultural and Forest Meteorology↗

A Lagrangian stochastic model for aerial spray transport above an oak forest

An aerial spray droplets' transport model has been developed by applying recent advances in Lagrangian stochastic simulation of heavy particles. A two-dimensional Lagrangian stochastic model was adopted to simulate the spray droplet dispersion in atmospheric turbulence by adjusting the Lagrangian integral time scale along the drop trajectory. The other major physical processes affecting the transport of spray droplets above a forest canopy, the aircraft wingtip vortices and the droplet evaporation, were also included in each time step of the droplets' transport. The model was evaluated using data from an aerial spray field experiment. In generally neutral stability conditions, the accuracy of the model predictions varied from run-to-run as expected. The average root-mean-square error was 24.61 IU cm −2 , and the average relative error was 15%. The model prediction was adequate in two-dimensional steady wind conditions, but was less accurate in variable wind condition. The results indicated that the model can simulate successfully the ensemble; average transport of aerial spray droplets under neutral, steady atmospheric wind conditions.

Agricultural and Forest Meteorology↗

Variability in surface energy flux partitioning during Washita '92: Resulting effects on Penman-Monteith and Priestley-Taylor parameters

During the Washita '92 field experiment, the local surface energy balance was evaluated at four locations in the USDA-ARS Little Washita River Watershed near Chickasha, OK, using the Bowen ratio-energy balance (BREB) approach. For any given day, differences in the partitioning of the available energy appeared to be mostly a function of the type of vegetation at the site, while the actual magnitude of the fluxes was mostly affected by cloud cover. The soil surface was initially wet, and gradually dried during the field experiment. However, there was not a corresponding decrease in the evaporative fraction, which would have indicated a decreasing contribution of soil evaporation to the total latent heat flux. Ground weather data indicated a large shift in the direction and magnitude of the surface winds, and a significant increase in air temperature and vapor pressure deficit. During this period, the evaporative fraction actually increased at two of the four sites. The response of the different sites to the changing near-surface atmospheric conditions was studied in more detail by evaluating the canopy resistance ( r c ) to evaporation using the Penman-Monteith equation and the Priestley-Taylor parameter (α). Midday averages of ( r c ) and (α) tended to decrease (increase) with increasing vapor pressure deficit for two of the sites while such a trend was not evident for the other two sites. Estimates of stomatal resistances indicated that significant plant physiological differences existed between the sites containing weedy vegetation versus the grasses at the pasture/rangeland sites. Even though soil moisture conditions were relatively wet, a was less than 1 at all sites and there was no trend in α as a function of surface soil moisture conditions. These findings suggest that vegetation types C in mixed agricultural /rangeland ecosystems can have significantly different responses to similar atmospheric forcing conditions.

Agricultural and Forest Meteorology↗

Surface energy exchanges along a tundra-forest transition and feedbacks to climate

Surface energy exchanges were measured in a sequence of five sites representing the major vegetation types in the transition from arctic tundra to forest. This is the major transition in vegetation structure in northern high latitudes. We examined the influence of vegetation structure on the rates of sensible heating and evapotranspiration to assess the potential feedbacks to climate if high-latitude warming were to change the distribution of these vegetation types. Measurements were made at Council on the Seward Peninsula, Alaska, at representative tundra, low shrub, tall shrub, woodland (treeline), and boreal forest sites. Structural differences across the transition from tundra to forest included an increase in the leaf area index (LAI) from 0.52 to 2.76, an increase in canopy height from 0.1 to 6.1 m, and a general increase in canopy complexity. These changes in vegetation structure resulted in a decrease in albedo from 0.19 to 0.10 as well as changes to the partitioning of energy at the surface. Bulk surface resistance to water vapor flux remained virtually constant across sites, apparently because the combined soil and moss evaporation decreased while transpiration increased along the transect from tundra to forest. In general, sites became relatively warmer and drier along the transect with the convective fluxes being increasingly dominated by sensible heating, as evident by an increasing Bowen ratio from 0.94 to 1.22. The difference in growing season average daily sensible heating between tundra and forest was 21 W m-2. Fluxes changed non-linearly along the transition, with both shrubs and trees substantially enhancing heat transfer to the atmosphere. These changes in vegetation structure that increase sensible heating could feed back to enhance warming at local to regional scales. The magnitude of these vegetation effects on potential high-latitude warming is two to three times greater than suggested by previous modeling studies. ?? 2005 Elsevier B.V. All rights reserved.

Agricultural and Forest Meteorology↗

Deriving a light use efficiency model from eddy covariance flux data for predicting daily gross primary production across biomes

The quantitative simulation of gross primary production (GPP) at various spatial and temporal scales has been a major challenge in quantifying the global carbon cycle. We developed a light use efficiency (LUE) daily GPP model from eddy covariance (EC) measurements. The model, called EC-LUE, is driven by only four variables: normalized difference vegetation index (NDVI), photosynthetically active radiation (PAR), air temperature, and the Bowen ratio of sensible to latent heat flux (used to calculate moisture stress). The EC-LUE model relies on two assumptions: First, that the fraction of absorbed PAR (fPAR) is a linear function of NDVI; Second, that the realized light use efficiency, calculated from a biome-independent invariant potential LUE, is controlled by air temperature or soil moisture, whichever is most limiting. The EC-LUE model was calibrated and validated using 24,349 daily GPP estimates derived from 28 eddy covariance flux towers from the AmeriFlux and EuroFlux networks, covering a variety of forests, grasslands and savannas. The model explained 85% and 77% of the observed variations of daily GPP for all the calibration and validation sites, respectively. A comparison with GPP calculated from the Moderate Resolution Imaging Spectroradiometer (MODIS) indicated that the EC-LUE model predicted GPP that better matched tower data across these sites. The realized LUE was predominantly controlled by moisture conditions throughout the growing season, and controlled by temperature only at the beginning and end of the growing season. The EC-LUE model is an alternative approach that makes it possible to map daily GPP over large areas because (1) the potential LUE is invariant across various land cover types and (2) all driving forces of the model can be derived from remote sensing data or existing climate observation networks.

Agricultural and Forest Meteorology↗

Evapotranspiration in a cottonwood (Populus fremontii) restoration plantation estimated by sap flow and remote sensing methods

Native tree plantations have been proposed for the restoration of wildlife habitat in human-altered riparian corridors of western U.S. rivers. Evapotranspiration (ET) by riparian vegetation is an important, but poorly quantified, term in river water budgets. Native tree restoration plots will potentially increase ET. We used sap flow sensors and satellite imagery to estimate ET in a 8 ha, cottonwood (Populus fremontii) restoration plot on the Lower Colorado River. Biometric methods were used to scale leaf area to whole trees and stands of trees. This technique was used to validate our estimates of ET obtained by scaling from branch level to stand (or plot) level measurements of ET. Cottonwood trees used 6-10 mm day-1 of water during the peak of the growing season as determined by sap flow sensors, and annual rates scaled by time-series MODIS satellite imagery were approximately 1.2 m year-1. Although irrigation was not quantified, the field had been flood irrigated at 2 week intervals during the 3 years prior to the study, receiving approximately 2 m year-1 of water. A frequency-domain electromagnetic induction survey of soil moisture content showed that the field was saturated (26-28% gravimetric water content) at the 90-150 cm soil depth under the field. Trees were apparently rooted into the saturated soil, and considerable saving of water could potentially be achieved by modifying the irrigation regime to take into account that cottonwoods are phreatophytes. The study showed that cottonwood ET can be monitored by remote sensing methods calibrated with ground measurements with an accuracy or uncertainty of 20-30% in western riparian corridors. ?? 2007 Elsevier B.V. All rights reserved.

Agricultural and Forest Meteorology↗

CO2 transport over complex terrain

CO2 transport processes relevant for estimating net ecosystem exchange (NEE) at the Niwot Ridge AmeriFlux site in the front range of the Rocky Mountains, Colorado, USA, were investigated during a pilot experiment. We found that cold, moist, and CO2-rich air was transported downslope at night and upslope in the early morning at this forest site situated on a ???5% east-facing slope. We found that CO2 advection dominated the total CO2 transport in the NEE estimate at night although there are large uncertainties because of partial cancellation of horizontal and vertical advection. The horizontal CO2 advection captured not only the CO2 loss at night, but also the CO2 uptake during daytime. We found that horizontal CO2 advection was significant even during daytime especially when turbulent mixing was not significant, such as in early morning and evening transition periods and within the canopy. Similar processes can occur anywhere regardless of whether flow is generated by orography, synoptic pressure gradients, or surface heterogeneity as long as CO2 concentration is not well mixed by turbulence. The long-term net effect of all the CO2 budget terms on estimates of NEE needs to be investigated. ?? 2007 Elsevier B.V. All rights reserved.

Agricultural and Forest Meteorology↗

Canopy structure and atmospheric flows in relation to the δ13C of respired CO 2 in a subalpine coniferous forest

Stable isotopes provide insight into ecosystem carbon cycling, plant physiological processes, atmospheric boundary-layer dynamics, and are useful for the integration of processes over multiple scales. Of particular interest is the carbon isotope content (δ 13 C) of nocturnal ecosystem-respired CO 2 ( δ R ). Recent advances in technology have made it possible to continuously examine the variation in δ R within a forest canopy over relatively long time-scales (months–years). We used tunable diode laser spectroscopy to examine δ R at within- and below-canopy spatial locations in a Colorado subalpine forest (the Niwot Ridge AmeriFlux site). We found a systematic pattern of increased δ R within the forest canopy ( δ R-c ) compared to that near the ground ( δ R-g ). Values of δ R-c were weakly correlated with the previous day's mean maximum daytime vapor pressure deficit (VPD). Conversely, there was a negative but still weak correlation between δ R-g and time-lagged (0–5 days) daily mean soil moisture. The topography and presence of sustained nightly drainage flows at the Niwot Ridge forest site suggests that, on nights with stable atmospheric conditions, there is little mixing of air near the ground with that in the canopy. Atmospheric stability was assessed using thresholds of friction velocity, stability above the canopy, and bulk Richardson number within the canopy. When we selectively calculated δ R-g and δ R-c by removing time periods when ground and canopy air were well mixed, we found stronger correlations between δ R-c and VPD, and δ R-g and soil moisture. This suggests that there may be fundamental differences in the environmental controls on δ R at sub-canopy spatial scales. These results may help explain the wide variance observed in the correlation of δ R with different environmental parameters in other studies.

Colorado↗

Sap flux-scaled transpiration by tamarisk (Tamarix spp.) before, during and after episodic defoliation by the saltcedar leaf beetle (Diorhabda carinulata)

The release of the saltcedar beetle (Diorhabda carinulata) has resulted in the periodic defoliation of tamarisk (Tamarix spp.) along more than 1000 river km in the upper Colorado River Basin and is expected to spread along many other river reaches throughout the upper basin, and possibly into the lower Colorado River Basin. Identifying the impacts of these release programs on tamarisk water use and subsequent water cycling in arid riparian systems are largely unknown, due in part to the difficulty of measuring water fluxes in these systems. We used lab-calibrated, modified heat-dissipation sap flux sensors to monitor tamarisk water use (n=20 trees) before, during and after defoliation by the saltcedar leaf beetle during the 2008 and 2009 growing seasons (May-October) in southeastern Utah. We incorporated a simple model that related mean stem sap flux density (Js) with atmospheric vapor pressure deficit (vpd) before the onset of defoliation in 2008. The model was used to calculate differences between predicted Js and Js measured throughout the two growing seasons. Episodic defoliation resulted in a 16% reduction in mean annual rates of Js in both 2008 and 2009, with decreases occurring only during the periods in which the trees were defoliated (about 6-8 weeks per growing season). In other words, rates of Js rebounded to values predicted by the model when the trees produced new leaves after defoliation. Sap flux data were scaled to stand water use by constructing a tamarisk-specific allometric equation to relate conducting sapwood area to stem diameter, and by measuring the size distribution of stems within the stand. Total water use in both years was 0.224m, representing a reduction of about 0.04myr-1. Results showed that repeated defoliation/refoliation cycles did not result in a progressive decrease in either leaf production or water use over the duration of the study. This investigation improves ground-based estimates of tamarisk water use, and will support future efforts to characterize impacts of the beetle on basin-wide hydrologic processes. ?? 2010 Elsevier B.V.

Agricultural and Forest Meteorology↗

Comparing laser-based open- and closed-path gas analyzers to measure methane fluxes using the eddy covariance method

Closed- and open-path methane gas analyzers are used in eddy covariance systems to compare three potential methane emitting ecosystems in the Sacramento-San Joaquin Delta (CA, USA): a rice field, a peatland pasture and a restored wetland. The study points out similarities and differences of the systems in field experiments and data processing. The closed-path system, despite a less intrusive placement with the sonic anemometer, required more care and power. In contrast, the open-path system appears more versatile for a remote and unattended experimental site. Overall, the two systems have comparable minimum detectable limits, but synchronization between wind speed and methane data, air density corrections and spectral losses have different impacts on the computed flux covariances. For the closed-path analyzer, air density effects are less important, but the synchronization and spectral losses may represent a problem when fluxes are small or when an undersized pump is used. For the open-path analyzer air density corrections are greater, due to spectroscopy effects and the classic Webb–Pearman–Leuning correction. Comparison between the 30-min fluxes reveals good agreement in terms of magnitudes between open-path and closed-path flux systems. However, the scatter is large, as consequence of the intensive data processing which both systems require.

Agricultural and Forest Meteorology↗

Hurricane disturbance and recovery of energy balance, CO 2 fluxes and canopy structure in a mangrove forest of the Florida Everglades

Eddy covariance (EC) estimates of carbon dioxide (CO 2 ) fluxes and energy balance are examined to investigate the functional responses of a mature mangrove forest to a disturbance generated by Hurricane Wilma on October 24, 2005 in the Florida Everglades. At the EC site, high winds from the hurricane caused nearly 100% defoliation in the upper canopy and widespread tree mortality. Soil temperatures down to -50 cm increased, and air temperature lapse rates within the forest canopy switched from statically stable to statically unstable conditions following the disturbance. Unstable conditions allowed more efficient transport of water vapor and CO 2 from the surface up to the upper canopy layer. Significant increases in latent heat fluxes (LE) and nighttime net ecosystem exchange (NEE) were also observed and sensible heat fluxes (H) as a proportion of net radiation decreased significantly in response to the disturbance. Many of these impacts persisted through much of the study period through 2009. However, local albedo and MODIS (Moderate Resolution Imaging Spectro-radiometer) data (the Enhanced Vegetation Index) indicated a substantial proportion of active leaf area recovered before the EC measurements began 1 year after the storm. Observed changes in the vertical distribution and the degree of clumping in newly emerged leaves may have affected the energy balance. Direct comparisons of daytime NEE values from before the storm and after our measurements resumed did not show substantial or consistent differences that could be attributed to the disturbance. Regression analyses on seasonal time scales were required to differentiate the storm's impact on monthly average daytime NEE from the changes caused by interannual variability in other environmental drivers. The effects of the storm were apparent on annual time scales, and CO 2 uptake remained approximately 250 g C m -2 yr -1 lower in 2009 compared to the average annual values measured in 2004–2005. Dry season CO 2 uptake was relatively more affected by the disturbance than wet season values. Complex leaf regeneration dynamics on damaged trees during ecosystem recovery are hypothesized to lead to the variable dry versus wet season impacts on daytime NEE. In contrast, nighttime CO 2 release (i.e., nighttime respiration) was consistently and significantly greater, possibly as a result of the enhanced decomposition of litter and coarse woody debris generated by the storm, and this effect was most apparent in the wet seasons compared to the dry seasons. The largest pre- and post-storm differences in NEE coincided roughly with the delayed peak in cumulative mortality of stems in 2007–2008. Across the hurricane-impacted region, cumulative tree mortality rates were also closely correlated with declines in peat surface elevation. Mangrove forest–atmosphere interactions are interpreted with respect to the damage and recovery of stand dynamics and soil accretion processes following the hurricane.

Florida↗