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Expert bioblitzes facilitate non-native fish tracking and interagency partnerships

Documenting the distribution and composition of non-native species populations can be challenging, especially when species cross jurisdictional boundaries that require interagency coordination. Herein I report the development of three tools that have been used in Florida over the past seven years to assist with tracking of non-native fishes: 1) an overarching organization to increase coordination and communication amongst stakeholders (Florida Non-Native Fish Action Alliance); 2) regularly-scheduled expert bioblitzes (Fish Slams); and 3) symposia (Fish Chats). Ten Fish Slams were held since 2012, which have included nearly 100 individuals from 20 organizations. Participants have sampled nearly 200 unique sites, capturing 36 non-native fish taxa. These activities have generated over 600 records for the U.S. Geological Survey’s Nonindigenous Aquatic Species database. Many specimens collected during Fish Slams are deposited into natural history museums or used by researchers. Informal interactions amongst colleagues working together in the field, at check-in meetings at the end of the day, and during more structured Fish Chat symposia allow members of various organizations to become acquainted, build trust, and share information and technology, which may then lead to professional collaborations. While this program is focused on non-native fish species in south Florida, I also discuss how the expert bioblitz may be adapted to suit other taxonomic groups and a variety of conservation needs.

Florida↗

Olympic Fisher Reintroduction Project: Progress report 2008-2011

This progress report summarizes the final year of activities of Phase I of the Olympic fisher restoration project. The intent of the Olympic fisher reintroduction project is to reestablish a self-sustaining population of fishers on the Olympic Peninsula. To achieve this goal, the Olympic fisher reintroduction project released 90 fishers within Olympic National Park from 2008 to 2010. The reintroduction of fishers to the Olympic Peninsula was designed as an adaptive management project, including the monitoring of released fishers as a means to (1) evaluate reintroduction success, (2) investigate key biological and ecological traits of fishers, and (3) inform future reintroduction, monitoring, and research efforts. This report summarizes reintroduction activities and preliminary research and monitoring results completed through December 2011. The report is non-interpretational in nature. Although we report the status of movement, survival, and home range components of the research, we have not completed final analyses and interpretation of research results. Much of the data collected during the monitoring and research project will be analyzed and interpreted in the doctoral dissertation being developed by Jeff Lewis; the completion of this dissertation is anticipated prior to April 2013. We anticipate that this work, and analyses of other data collected during the project, will result in several peer-reviewed scientific publications in ecological and conservation journals, which collectively will comprise the final reporting of work summarized here. These publications will include papers addressing post-release movements, survival, resource selection, food habits, and age determination of fishers.

Report↗

Can Dugongs Survive in Palau?

In August 1991 we surveyed dugongs Dugong dugon in the coastal waters of Palau using methods similar to aerial surveys conducted in 1977, 1978 and 1983. Twenty-six dugongs (including four calves) were seen, a count within the range obtained previously. The rate at which dugongs were seen per unit flight-time was lower than for any of the other surveys, despite the observers being more experienced than those used in the past. More than 20 knowledgeable Palauan residents (including five dugong hunters) were interviewed about dugong abundance, mortality and natural history. They told us that the illegal killing of dugongs occurs openly. We found locally crafted jewellery made from dugong ribs for sale illegally at four stores. Unless poaching is stopped, we believe that dugongs will become extinct in Palau as they have in several other archipelagoes.

Biological Conservation↗

Fire and aquatic ecosystems of the western USA: Current knowledge and key questions

Understanding of the effects of wildland fire and fire management on aquatic and riparian ecosystems is an evolving field, with many questions still to be resolved. Limitations of current knowledge, and the certainty that fire management will continue, underscore the need to summarize available information. Integrating fire and fuels management with aquatic ecosystem conservation begins with recognizing that terrestrial and aquatic ecosystems are linked and dynamic, and that fire can play a critical role in maintaining aquatic ecological diversity. To protect aquatic ecosystems we argue that it will be important to: (1) accommodate fire-related and other ecological processes that maintain aquatic habitats and biodiversity, and not simply control fires or fuels; (2) prioritize projects according to risks and opportunities for fire control and the protection of aquatic ecosystems; and (3) develop new consistency in the management and regulatory process. Ultimately, all natural resource management is uncertain; the role of science is to apply experimental design and hypothesis testing to management applications that affect fire and aquatic ecosystems. Policy-makers and the public will benefit from an expanded appreciation of fire ecology that enables them to implement watershed management projects as experiments with hypothesized outcomes, adequate controls, and replication.

Forest Ecology and Management↗

Effects of landscape features on waterbird use of rice fields

Literature is reviewed to determine the effects of landscape features on waterbird use of fields in regions where rice (Oryza sativa) is grown. Rice-growing landscapes often consist of diverse land uses and land cover, including rice fields, irrigation ditches, other agricultural fields, grasslands, forests and natural wetlands. Numerous studies indicate that local management practices, such as water depth and timing of flooding and drawdown, can strongly influence waterbird use of a given rice field. However, the effects of size and distribution of rice fields and associated habitats at a landscape scale have received less attention. Even fewer studies have focused on local and landscape effects simultaneously. Habitat connectivity, area of rice, distance to natural wetlands, and presence and distance to unsuitable habitat can be important parameters influencing bird use of rice fields. However, responses to a given landscape vary with landscape structure, scale of analysis, among taxa and within taxa among seasons. A lack of multi-scale studies, particularly those extending beyond simple presence and abundance of a given species, and a lack of direct tests comparing the relative importance of landscape features with in-field management activities limits understanding of the importance of landscape in these systems and hampers waterbird conservation and management.

Waterbirds↗

Cooperative Fish and Wildlife Research Units Program—2016 year in review

Summary The Cooperative Fish and Wildlife Research Units (CRU) Program had a productive year in 2016. Despite vacancies in our scientist ranks exceeding 20 percent, our research, training, and teaching portfolio was full and we graduated 93 students and published 398 manuscripts primarily focused on addressing the real conservation challenges of our cooperators. As I’ve stated before, our mission is our legacy: meeting the actionable science needs of our cooperators, providing them technical guidance and assistance in interpreting and applying new advances in science, and developing the future workforce through graduate education and mentoring. Our scientists and the manner in which they approach our mission continue to inspire me. The most rewarding part of my job is meeting and engaging with the students they recruit—the conservation professionals of the future. I cannot help but feel uplifted after discussions with and presentations by these young men and women. Personally, I owe my place in the profession today to the mentoring I received as a CRU student, and today’s CRU scientists have raised the bar. It gives me hope for the future of conservation, and added motivation to see our vacancies filled so that we can expand our portfolio. The National Cooperators’ Coalition has been active and is strategically working to build support on our behalf. Sincere thanks to the American Fisheries Society, the Association of Fish and Wildlife Agencies, the Boone and Crockett Club, the National Association of University Fish and Wildlife Programs, the Wildlife Management Institute, and The Wildlife Society for their efforts and those of their affiliated members. We co-sponsored a workshop at the 2016 North American Wildlife and Natural Resources Conference along with the American Fisheries Society, the Association of Fish and Wildlife Agencies, the Wildlife Management Institute, and The Wildlife Society, titled “Barriers and Bridges in Reconnecting Natural Resources Science and Management.” The workshop was well received and we have been asked to continue the dialogue with a second workshop in 2017. It was evident during the workshop that the CRU is viewed by our cooperators as an important and essential linkage between academia and practitioners. This is testament to the legacy of the CRU Program and the foundation it is built upon. In this Year in Review report, you will find details on staffing, vacancies, research funding, and other pertinent information. You will also see snapshots of CRU projects with information on how results have been or are being applied by cooperators. That is the essence of what we do: science that matters.

Circular↗

U.S.-Mexico Borderland & vegetation community map

People on both sides of the United States-Mexico border need a high-resolution, binational vegetation community map that spans the entire United States-Mexico borderlands. Traditionally, mapping efforts in this region were impeded by complex logistics related to the international border, differing national needs and plans, and resource allocations and priorities. To address this need, scientists from the U.S. Geological Survey (USGS) Southwest Biological Science Center partnered with the Sonoran Joint Venture, the U.S. Fish and Wildlife Service (FWS) Migratory Bird Program, data engineers from the Department of Biosystems Engineering at the University of Arizona, and collaborators from the Wildlands Network, the Borderlands Program to produce the first prototype land cover map within the overlapping Mojave Desert, Sonoran Desert, and the North American Bird Conservation Initiative’s Bird Conservation Region 33 (BCR33) using Landsat satellite data . BCR33 is an area of high biodiversity, providing habitat for bird species of concern and other wildlife. The land cover map supports FWS recovery plan efforts related to conservation planning activities for many species, including Yellow-billed Cuckoo ( Coccyzus americanus ), Cactus Ferruginous Pygmy-Owl ( Glaucidium brasilianum cactorum ), Southwestern Willow Flycatcher ( Empidonax traillii extimus ), Yuma Ridgway’s Rail ( Rallus obsoletus yumanensis ), Bendire’s thrasher ( Toxostoma bendirei ), LeConte’s thrasher ( Toxostoma lecontei ), Masked Bobwhite ( Colinus virginianus ridgwayi ), jaguar ( Panthera onca ), and endangered plants such as Bartram’s stonecrop ( Graptopetalum bartramii ) and the Pima pineapple cactus ( Coryphantha robustispina ssp. robustispina ). In 2024, a Phase-II map for the full BCR33 region was completed, increasing the understanding of the binational nature of natural communities. The published map and associated paper can be found here .

Borderland↗

Failure to achieve recommended environmental flows coincides with declining fish populations: Long-term trends in regulated and unregulated rivers

Dams can be operated to mimic components of the natural flow regime to minimise impacts on downstream ecosystems. However, infrastructure, societal needs, water management, and catchment runoff constrain which and when flow regime attributes can be mimicked. We compared fish assemblage responses, including native and non-native species, over 2 decades of managed environmental flows to those in a river retaining a relatively unaltered flow regime. Both of these arid-land rivers are within the overallocated Colorado River basin and have experienced declines in catchment runoff over the past 20 years. We predicted that fish–flow relationships would be conserved across time and between managed and unmanaged rivers. Declines in flow in both rivers coincided with declines in some native fishes, and more native and non-native fish species exhibited declines in the managed river than in the unmanaged river. Our ability to detect previously documented native fish–flow relationships diminished in the managed river system because established environmental flow targets were not met due to water management, but we detected these fish–flow relationships in the unmanaged river. Our results suggest declining catchment runoff and increased consumptive water use could reduce the effectiveness of environmental flows that have lower priority in most years.

Freshwater Biology↗

Isotope hydrology dynamics of riverine wetlands in the Kankakee Watershed, Indiana

Wetland restoration activities may disturb shallow ground-water flow dynamics. There may be unintentional sources of water flowing into a constructed wetland that could compromise the long-term viability of a wetland function. Measurement of naturally-occurring isotopes in the hydrosphere can provide an indication of provenance, flow paths or components, and residence times or ages of wetland ground-water flow systems. Hydraulic head measurements may not provide sufficient detail of shallow flow disturbances and can be complemented by analyzing isotopes in waters flowing through the wetland. Two north-central Indiana wetlands in the Kankakee watershed are being studied to determine the adequacy of wetland restoration activities. The native LaSalle wetland and the restored Hog Marsh wetland have contrasting ground-water flow regimes. The conservative water isotopes 18 O, 2 H, and 3 H, and selected solute isotopes 13 C, 14 C, 15 N, 34 S, 87 Sr, and 206–208Pb, demonstrate the complexity of ground-water flow in Hog Marsh compared to the established flow regime at the LaSalle wetland.

Indiana↗

The U.S. Geological Survey in Alaska, 1979 programs

This circular describes the 1979 programs of the U.S. Geological Survey in Alaska. The mission of the Geological Survey is to identify the Nation 's land, water, energy, and mineral resources; to classify federally-owned mineral lands and water-power sites; to resolve the exploration and development of energy and natural resources on Federal and Indian lands; and to explore and appraise the petroleum potential of the National Petroleum Reserve in Alaska. Alaska is at once the largest, the least populated, the least explored, and the least developed State in the Nation. More than half of the Nation 's 600 million acres of Outer Continental Shelf lies off Alaska 's coast, and nearly half of the remaining 762 million acres of Federal land are within its borders. Its resources of all kinds present an opportunity to demonstrate how the needs of both conservation and development can be met for the benefit of the American people. (Kosco-USGS)

Alaska↗

The United States Geological Survey in Alaska: Accomplishments during 1978

This circular describes the 1979 programs of the U.S. Geological Survey in Alaska. The mission of the Geological Survey is to identify the Nation 's land, water, energy, and mineral resources; to classify federally-owned mineral lands and water-power sites; to resolve the exploration and development of energy and natural resources on Federal and Indian lands; and to explore and appraise the petroleum potential of the National Petroleum Reserve in Alaska. Alaska is at once the largest, the least populated, the least explored, and the least developed State in the Nation. More than half of the Nation 's 600 million acres of Outer Continental Shelf lies off Alaska 's coast, and nearly half of the remaining 762 million acres of Federal land are within its borders. Its resources of all kinds present an opportunity to demonstrate how the needs of both conservation and development can be met for the benefit of the American people.

Alaska↗

Hydrologic Unit Map -- 1974, New York

This map and accompanying table show Hydrologic Units that are basically hydrographic in nature. The Cataloging Units shown will supplant the Cataloging Units previously used by the U.S. Geological Survey in its Catalog of Information on Water Data (1966-72). The previous U.S. Geological Survey Catalog-Indexing System was by map number and letter, such as 49M. The boundaries shown have been adapted from "The Catalog of Information on Water Data" (1972), "Water Resources Regions and Subregions for the National Assessment of Water and Related Land Resources" by the U.S. Water Resources Council (1970), " River Basins of the United States" by the U.S. Soil Conservation Service (1963, 1970), "River Basin Maps Showing Hydrologic Stations" by the Inter-Agency Committee on Water Resources, Subcommittee on Hydrology (1961), and States planning maps.

New York↗

Benthic substrate classification map: Gulf Islands National Seashore

The 2005 hurricane season was devastating for the Mississippi Gulf Coast. Hurricane Katrina caused significant degradation of the barrier islands that compose the Gulf Islands National Seashore (GUIS). Because of the ability of coastal barrier islands to help mitigate hurricane damage to the mainland, restoring these habitats prior to the onset of future storms will help protect the islands themselves and the surrounding habitats. During Hurricane Katrina, coastal barrier islands reduced storm surge by approximately 10 percent and moderated wave heights (Wamsley and others, 2009). Islands protected the mainland by preventing ocean waves from maintaining their size as they approached the mainland. In addition to storm protection, it is advantageous to restore these islands to preserve the cultural heritage present there (for example, Fort Massachusetts) and because of the influence that these islands have on marine ecology. For example, these islands help maintain a salinity regime favorable to oysters in the Mississippi Sound and provide critical habitats for many migratory birds and endangered species such as sea turtles (Chelonia mydas, Caretta caretta, and Dermochelys coriacea), Gulf sturgeon (Acipenser oxyrinchus desotoi), and piping plovers (Charadrius melodus) (U.S. Army Corps of Engineers, 2009a). As land manager for the GUIS, the National Park Service (NPS) has been working with the State of Mississippi and the Mobile District of the U.S. Army Corps of Engineers to provide a set of recommendations to the Mississippi Coastal Improvements Program (MsCIP) that will guide restoration planning. The final set of recommendations includes directly renourishing both West Ship Island (to protect Fort Massachusetts) and East Ship Island (to restore the French Warehouse archaeological site); filling Camille Cut to recreate a continuous Ship Island; and restoring natural regional sediment transport processes by placing sand in the littoral zone just east of Petit Bois Island. Prevailing sediment transport processes will provide natural renourishment of the westward islands in the barrier system (U.S. Army Corps of Engineers, 2009b). One difficulty in developing the final recommendations is that few data are available to incorporate into restoration plans related to bathymetry, sediment type, and biota. For example, the most recent bathymetry available dates to when East and West Ship Islands were a single continuous island (1917). As a result, the MsCIP program has encouraged post-hurricane bathymetric data collection for future reference. Furthermore, managing a complex environment such as this barrier island system for habitat conservation and best resource usage requires significant knowledge about those habitats and resources. To effectively address these issues, a complete and comprehensive understanding of the type, geographic extent, and condition of marine resources included within the GUIS is required. However, the data related to the GUIS marine resources are limited either spatially or temporally. Specifically, there is limited knowledge and information about the distribution of benthic habitats and the characteristics of the offshore region of the GUIS, even though these are the habitats that will be most affected by habitat restoration. The goal of this project is to develop a comprehensive map of the benthic marine habitats within the GUIS to give park managers the ability to develop strategies for coastal and ocean-resource management and to aid decisionmakers in evaluating conservation priorities.

Mississippi↗

Stratigraphic controls on fluid and solute fluxes across the sediment-water interface of an estuary

Shallow stratigraphic features, such as infilled paleovalleys, modify fresh groundwater discharge to coastal waters and fluxes of saltwater and nutrients across the sediment–water interface. We quantify the spatial distribution of shallow surface water–groundwater exchange and nitrogen fluxes near a paleovalley in Indian River Bay, Delaware, using a hand resistivity probe, conventional seepage meters, and pore-water samples. In the interfluve (region outside the paleovalley) most nitrate-rich fresh groundwater discharges rapidly near the coast with little mixing of saline pore water, and nitrogen transport is largely conservative. In the peat-filled paleovalley, fresh groundwater discharge is negligible, and saltwater exchange is deep (∼1 m). Long pore-water residence times and abundant sulfate and organic matter promote sulfate reduction and ammonium production in shallow sediment. Reducing, iron-rich fresh groundwater beneath paleovalley peat discharges diffusely around paleovalley margins offshore. In this zone of diffuse fresh groundwater discharge, saltwater exchange and dispersion are enhanced, ammonium is produced in shallow sediments, and fluxes of ammonium to surface water are large. By modifying patterns of groundwater discharge and the nature of saltwater exchange in shallow sediments, paleovalleys and other stratigraphic features influence the geochemistry of discharging groundwater. Redox reactions near the sediment–water interface affect rates and patterns of geochemical fluxes to coastal surface waters. For example, at this site, more than 99% of the groundwater-borne nitrate flux to the Delaware Inland Bays occurs within the interfluve portion of the coastline, and more than 50% of the ammonium flux occurs at the paleovalley margin.

Delaware↗

Detection and identification of aquatic birnaviruses by PCR assay

A reverse transcriptase polymerase chain reaction (RT-PCR) assay was developed for the detection and identification of aquatic birnaviruses. The four sets of primers (PrA, PrB, PrC, and PrD) that we used are specific for regions of cDNA coded by genome segment A of aquatic birnaviruses. PrA identifies a large fragment (1,180 bp) within the pVP2-coding region, and PrB identifies a 524-bp fragment within the sequence amplified by PrA. Primer set PrC frames a genome fragment (339 bp) within the NS-VP3-coding region, and PrD identifies a 174-bp sequence within the fragment identified by PrC. PrB and PrD amplified cDNAs from all nine recognized serotypes of aquatic birnavirus serogroup A as well as the N1 isolate that may represent a 10th serotype. These results indicate that these three primer sequences are highly conserved and can be used in PCR assays for group identification of these viruses. PrA routinely produced amplification products from eight serotypes but exhibited variable results with one serotype, and primer PrC identified 6 of the 11 virus isolates tested. The qualitative sensitivity of the RT-PCR assay was evaluated by comparison of the results with those of cell culture isolation assays. With the exception of one sample, the RT-PCR assay with primer PrD was as accurate as cell culture isolation for detecting virus in kidney and spleen tissues from naturally infected, asymptomatic carrier fish. These results indicate that the RT-PCR assay can be a rapid and reliable substitute for cell culture methods for the detection of aquatic birnaviruses.

Journal of Clinical Microbiology↗

Redistribution and growth of the Caspian Tern population in the Pacific Coast region of North America, 1981-2000

We examined nesting distribution and demography of the Pacific Coast population of Caspian Terns ( Sterna caspia ) using breeding records and band recoveries spanning two decades since the first population assessment. Since 1980, population size has more than doubled to about 12 900 pairs, yet the proportion of the population nesting at inland (18%) versus coastal sites (82%) has remained constant. Although the breeding range of the Pacific Coast population has expanded northward into Alaska and farther south in Mexico, there was no net latitudinal shift in the distribution of breeding pairs or new colonies. The distribution of breeding birds among areas changed dramatically, however, with 69% of breeding terns now nesting in Oregon (primarily in the Columbia River estuary) versus 4% during the late 1970s. During the past 20 years, there has continued to be a greater proportion of Caspian Terns breeding at anthropogenic sites compared to natural sites. Estimated annual survival rates for hatch-year and after-third-year birds during 1981-1998 were greater than during 1955-1980, consistent with the higher rate of population increase in recent decades. Fecundity required to maintain a stable population ( λ = 1 ) was estimated at 0.32–0.74 fledglings pair −1 , depending on band recovery probabilities for sub-adults. Caspian Terns readily moved among breeding sites and rapidly colonized new areas; however, a greater concentration of breeding Caspian Terns among fewer colonies in response to anthropogenic factors is an important conservation concern for this species.

Condor↗

Hydrologic Unit Map -- 1974, State of Michigan

This map and accompanying table show Hydrologic Units that are basically hydrographic in nature. The Cataloging Units shown will supplant the Cataloging Units previously used by the U.S. Geological Survey in its Catalog of Information on Water Data (1966-72). The previous U.S. Geological Survey Catalog-Indexing System was by map number and letter, such as 49 M. The boundaries shown have been adapted from "The Catalog of Information on Water Data" (1972), "Water Resources Regions and Subregions for the National Assessment of Water and Related Land Resources" by the U.S. Water Resources Council (1970), " River Basins of the United States" by the U.S. Soil Conservation Service (1963, 1970), "River Basin Maps Showing Hydrologic Stations" by the Inter-Agency Committee on Water Resources, Subcommittee on Hydrology (1961), and States planning maps.

Michigan↗

Hydrologic Unit Map - 1974, state of Montana

This map and accompanying table show Hydrologic Units that are basically hydrographic in nature. The Cataloging Units shown will supplant the Cataloging Units previously used by the U.S. Geological Survey in its Catalog of Informaiton on Water Data (1966-72). The previous U.S. Geological Survey Catalog-Indexing System was by map number and letter, such as 49M. The boundaries as shown have been adapted from "The Catalog of Information on Water Data" (1972), "Water Resources Regions and Subregions for the National Assessment of Water and Related Land Resources" by the U.S. Water Reseources Council (1970), "River Basins of the United States" by the U.S. Soil Conservation Service ((1963, 1970), "River Basin Maps Showing Hydrologic Stations" by the Inter-Agency Committee on Water Resources, Subcommittee on Hydrology (1961), and State planning maps.

Montana↗