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Human activities and climate variability drive fast-paced change across the world's estuarine-coastal ecosystems

Time series of environmental measurements are essential for detecting, measuring and understanding changes in the Earth system and its biological communities. Observational series have accumulated over the past 2–5 decades from measurements across the world's estuaries, bays, lagoons, inland seas and shelf waters influenced by runoff. We synthesize information contained in these time series to develop a global view of changes occurring in marine systems influenced by connectivity to land. Our review is organized around four themes: (i) human activities as drivers of change; (ii) variability of the climate system as a driver of change; (iii) successes, disappointments and challenges of managing change at the sea-land interface; and (iv) discoveries made from observations over time. Multidecadal time series reveal that many of the world's estuarine–coastal ecosystems are in a continuing state of change, and the pace of change is faster than we could have imagined a decade ago. Some have been transformed into novel ecosystems with habitats, biogeochemistry and biological communities outside the natural range of variability. Change takes many forms including linear and nonlinear trends, abrupt state changes and oscillations. The challenge of managing change is daunting in the coastal zone where diverse human pressures are concentrated and intersect with different responses to climate variability over land and over ocean basins. The pace of change in estuarine–coastal ecosystems will likely accelerate as the human population and economies continue to grow and as global climate change accelerates. Wise stewardship of the resources upon which we depend is critically dependent upon a continuing flow of information from observations to measure, understand and anticipate future changes along the world's coastlines.

Global Change Biology↗

Climate and plant controls on soil organic matter in coastal wetlands

Coastal wetlands are among the most productive and carbon‐rich ecosystems on Earth. Long‐term carbon storage in coastal wetlands occurs primarily belowground as soil organic matter (SOM). In addition to serving as a carbon sink, SOM influences wetland ecosystem structure, function, and stability. To anticipate and mitigate the effects of climate change, there is a need to advance understanding of environmental controls on wetland SOM. Here, we investigated the influence of four soil formation factors: climate, biota, parent materials, and topography. Along the northern Gulf of Mexico, we collected wetland plant and soil data across elevation and zonation gradients within ten estuaries that span broad temperature and precipitation gradients. Our results highlight the importance of climate‐plant controls and indicate that the influence of elevation is scale and location dependent. Coastal wetland plants are sensitive to climate change; small changes in temperature or precipitation can transform coastal wetland plant communities. Across the region, SOM was greatest in mangrove forests and in salt marshes dominated by graminoid plants. SOM was lower in salt flats that lacked vascular plants and in salt marshes dominated by succulent plants. We quantified strong relationships between precipitation, salinity, plant productivity, and SOM. Low precipitation leads to high salinity, which limits plant productivity and appears to constrain SOM accumulation. Our analyses use data from the Gulf of Mexico, but our results can be related to coastal wetlands across the globe and provide a foundation for predicting the ecological effects of future reductions in precipitation and freshwater availability. Coastal wetlands provide many ecosystem services that are SOM dependent and highly vulnerable to climate change. Collectively, our results indicate that future changes in SOM and plant productivity, regulated by cascading effects of precipitation on freshwater availability and salinity, could impact wetland stability and affect the supply of some wetland ecosystem services.

Global Change Biology↗

Groundwater flow cycling between a submarine spring and an inland fresh water spring

Spring Creek Springs and Wakulla Springs are large first magnitude springs that derive water from the Upper Floridan Aquifer. The submarine Spring Creek Springs are located in a marine estuary and Wakulla Springs are located 18 km inland. Wakulla Springs has had a consistent increase in flow from the 1930s to the present. This increase is probably due to the rising sea level, which puts additional pressure head on the submarine Spring Creek Springs, reducing its fresh water flow and increasing flows in Wakulla Springs. To improve understanding of the complex relations between these springs, flow and salinity data were collected from June 25, 2007 to June 30, 2010. The flow in Spring Creek Springs was most sensitive to rainfall and salt water intrusion, and the flow in Wakulla Springs was most sensitive to rainfall and the flow in Spring Creek Springs. Flows from the springs were found to be connected, and composed of three repeating phases in a karst spring flow cycle: Phase 1 occurred during low rainfall periods and was characterized by salt water backflow into the Spring Creek Springs caves. The higher density salt water blocked fresh water flow and resulted in a higher equivalent fresh water head in Spring Creek Springs than in Wakulla Springs. The blocked fresh water was diverted to Wakulla Springs, approximately doubling its flow. Phase 2 occurred when heavy rainfall resulted in temporarily high creek flows to nearby sinkholes that purged the salt water from the Spring Creek Springs caves. Phase 3 occurred after streams returned to base flow. The Spring Creek Springs caves retained a lower equivalent fresh water head than Wakulla Springs, causing them to flow large amounts of fresh water while Wakulla Springs flow was reduced by about half.

Florida;Georgia↗

Ecosystem consequences of fish parasites

In most aquatic ecosystems, fishes are hosts to parasites and, sometimes, these parasites can affect fish biology. Some of the most dramatic cases occur when fishes are intermediate hosts for larval parasites. For example, fishes in southern California estuaries are host to many parasites. The most common of these parasites, Euhaplorchis californiensis , infects the brain of the killifish Fundulus parvipinnis and alters its behaviour, making the fish 10–30 times more susceptible to predation by the birds that serve as its definitive host. Parasites like E. californiensis are embedded in food webs because they require trophic transmission. In the Carpinteria Salt Marsh estuarine food web, parasites dominate the links and comprise substantial amount of biomass. Adding parasites to food webs alters important network statistics such as connectance and nestedness. Furthermore, some free-living stages of parasites are food items for free-living species. For instance, fishes feed on trematode cercariae. Being embedded in food webs makes parasites sensitive to changes in the environment. In particular, fishing and environmental disturbance, by reducing fish populations, may reduce parasite populations. Indirect evidence suggests a decrease in parasites in commercially fished species over the past three decades. In addition, environmental degradation can affect fish parasites. For these reasons, parasites in fishes may serve as indicators of environmental impacts.

Journal of Fish Biology↗

Feedbacks between inundation, root production, and shoot growth in a rapidly submerging brackish marsh

1. Ecogeomorphic feedbacks between mineral sediment deposition and above-ground plant growth are thought to have dominated the evolution of many coastal ecosystems and landforms. However, land-use-related reductions in sediment delivery rates to estuaries world-wide suggest that these above-ground feedbacks may not apply in some of the world's most vulnerable coastal landscapes. 2. To understand the relationships between sea level rise and marsh survival, we measured root and shoot growth over experimentally manipulated elevations in a rapidly submerging, sediment deficient marsh. 3. Root growth was highest at a distinct optimum elevation in both Schoenoplectus americanus and Spartina patens . S. americanus shoot growth was highest at an optimum elevation, but S. patens shoot growth increased with elevation throughout the intertidal zone. 4. For marsh elevations that are higher than optimum (expected at low sea level rise rates), we propose that an acceleration in the rate of sea level rise will lead to enhanced root growth, organic accretion and wetland stability. For suboptimum marsh elevations (expected at rapid sea level rise rates and/or low sediment supply), increases in the water level will lead to reduced root growth and a decrease in the rate of elevation gain. 5. More than 80% of the marshland in our study area has an elevation below the optimum for root growth, suggesting that this previously unknown feedback could explain observations of rapid marsh deterioration in the region. 6. Synthesis . Below-ground responses of marshes to sea level rise are more broadly applicable than above-ground feedbacks because they are consistent among different species and do not depend on the availability of mineral sediment.

Journal of Ecology↗

Microhabitat use and seasonal movements of hatchery-reared and wild shortnose sturgeon in the Savannah River, South Carolina--Georgia

Radio and acoustic telemetry were used to monitor the seasonal movement of hatchery-reared and wild shortnose sturgeon (622-927 mm total length) in the Savannah River. Diploid, and sterile hatchery-reared shortnose sturgeon, and wild shortnose sturgeon showed apparent similar seasonal patterns of movement within the river. We were unable to detect any significant differences in the seasonal mean river location, minimum daily distance moved, absolute distance moved, displacement or mean territory size among treatments. Fish moved throughout the brackish and freshwater interface area of the Savannah River during the summer months. Coinciding with decreasing fall temperatures, fish of all treatment groups moved downriver into brackish areas of the upper estuary, residing in the Front, Middle, and Back Rivers, where they remained through winter. Upriver movements of some hatchery-reared and wild groups began in early February as river temperatures began to increase. Shortnose sturgeon from each group selected apparent similar thermal, salinity and water depth conditions throughout the year. Hatchery-reared fish may be useful as surrogates for wild fish in behavioural studies. Triploid or surgically-sterilized fish may be used in situ behavioural studies where genetic contamination is a concern. It may be possible to monitor habitats used by released hatchery-reared fish to locate or verify remnant populations of rare or endangered species in systems where they are thought to be extirpated.

Journal of Applied Ichthyology↗

Complex seasonal patterns of primary producers at the land-sea interface

Seasonal fluctuations of plant biomass and photosynthesis are key features of the Earth system because they drive variability of atmospheric CO 2 , water and nutrient cycling, and food supply to consumers. There is no inventory of phytoplankton seasonal cycles in nearshore coastal ecosystems where forcings from ocean, land and atmosphere intersect. We compiled time series of phytoplankton biomass (chlorophyll a ) from 114 estuaries, lagoons, inland seas, bays and shallow coastal waters around the world, and searched for seasonal patterns as common timing and amplitude of monthly variability. The data revealed a broad continuum of seasonal patterns, with large variability across and within ecosystems. This contrasts with annual cycles of terrestrial and oceanic primary producers for which seasonal fluctuations are recurrent and synchronous over large geographic regions. This finding bears on two fundamental ecological questions: (1) how do estuarine and coastal consumers adapt to an irregular and unpredictable food supply, and (2) how can we extract signals of climate change from phytoplankton observations in coastal ecosystems where local‐scale processes can mask responses to changing climate?

Ecology Letters↗

Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray

The relationship between environmental factors and functional gene diversity of ammonia-oxidizing bacteria (AOB) was investigated across a transect from the freshwater portions of the Chesapeake Bay and Choptank River out into the Sargasso Sea. Oligonucleotide probes (70-bp) designed to represent the diversity of ammonia monooxygenase (amoA) genes from Chesapeake Bay clone libraries and cultivated AOB were used to construct a glass slide microarray. Hybridization patterns among the probes in 14 samples along the transect showed clear variations in amoA community composition. Probes representing uncultivated members of the Nitrosospira-like AOB dominated the probe signal, especially in the more marine samples. Of the cultivated species, only Nitrosospira briensis was detected at appreciable levels. Discrimination analysis of hybridization signals detected two guilds. Guild 1 was dominated by the marine Nitrosospira-like probe signal, and Guild 2???s largest contribution was from upper bay (freshwater) sediment probes. Principal components analysis showed that Guild 1 was positively correlated with salinity, temperature and chlorophyll a concentration, while Guild 2 was positively correlated with concentrations of oxygen, dissolved organic carbon, and particulate nitrogen and carbon, suggesting that different amoA sequences represent organisms that occupy different ecological niches within the estuarine/marine environment. The trend from most diversity of AOB in the upper estuary towards dominance of a single type in the polyhaline region of the Bay is consistent with the declining importance of AOB with increasing salinity, and with the idea that AO-Archaea are the more important ammonia oxidizers in the ocean.

Environmental Microbiology↗

Phytoplankton productivity and biomass in the Charlotte Harbor estuarine system, Florida

Phytoplankton carbon-14 productivity at a depth of 50 percent of surface light and chlorophyll-a concentrations were measured every other month from November 1985 through September 1986 at 12 stations in the Charlotte Harbor estuarine system. Maximum productivity and chlorophyll-a concentrations occurred during summer or early autumn near the months of tidal rivers. Most of the variability in light-normalized productivity and chlorophyll-a could be attributed to two factors derived from Principal Component Analysis of ambient water-quality characteristics. One factor related to seasonal variability and the other to spatial variability. The seasonal factor incorporated the interaction of temperature and nutrients. The spatial factor incorporated the interaction of salinity, nutrients, and water color that resulted from the mixing of freshwater inflow and seawater. Although freshwater inflow increased the availability of nutrients in low salinity (less than 10 %) waters, the highly colored freshwater restricted light penetration and phytoplankton productivity. Maximum productivity and biomass occurred where color associated with the freshwater inflow had been diluted by seawater so that light and nutrients were both available. Concentrations of inorganic nitrogen were often at or below detection limit throughout most of the high salinity (greater than 20 %) waters of the estuary and was probably the most critical nutrient in limiting phytoplankton productivity.

Water Resources Bulletin↗

Wastewater effluent, combined sewer overflows, and other sources of organic compounds to Lake Champlain

Abstract: Some sources of organic wastewater compounds (OWCs) to streams, lakes, and estuaries, including wastewater‐treatment‐plant effluent, have been well documented, but other sources, particularly wet‐weather discharges from combined‐sewer‐overflow (CSO) and urban runoff, may also be major sources of OWCs. Samples of wastewater‐treatment‐plant (WWTP) effluent, CSO effluent, urban streams, large rivers, a reference (undeveloped) stream, and Lake Champlain were collected from March to August 2006. The highest concentrations of many OWCs associated with wastewater were in WWTP‐effluent samples, but high concentrations of some OWCs in samples of CSO effluent and storm runoff from urban streams subject to leaky sewer pipes or CSOs were also detected. Total concentrations and numbers of compounds detected differed substantially among sampling sites. The highest total OWC concentrations (10‐100 μg/l) were in samples of WWTP and CSO effluent. Total OWC concentrations in samples from urban streams ranged from 0.1 to 10 μg/l, and urban stream‐stormflow samples had higher concentrations than baseflow samples because of contributions of OWCs from CSOs and leaking sewer pipes. The relations between OWC concentrations in WWTP‐effluent and those in CSO effluent and urban streams varied with the degree to which the compound is removed through normal wastewater treatment. Concentrations of compounds that are highly removed during normal wastewater treatment [including caffeine, Tris(2‐butoxyethyl)phosphate, and cholesterol] were generally similar to or higher in CSO effluent than in WWTP effluent (and ranged from around 1 to over 10 μg/l) because CSO effluent is untreated, and were higher in urban‐stream stormflow samples than in baseflow samples as a result of CSO discharge and leakage from near‐surface sources during storms. Concentrations of compounds that are poorly removed during treatment, by contrast, are higher in WWTP effluent than in CSO, due to dilution. Results indicate that CSO effluent and urban stormwaters can be a significant major source of OWCs entering large water bodies such as Burlington Bay.

Journal of the American Water Resources Associatio↗

Effects of groundwater-flow paths on nitrate concentrations across two riparian forest corridors

Groundwater levels, apparent age, and chemistry from field sites and groundwater-flow modeling of hypothetical aquifers collectively indicate that groundwater-flow paths contribute to differences in nitrate concentrations across riparian corridors. At sites in Virginia (one coastal and one Piedmont), lowland forested wetlands separate upland fields from nearby surface waters (an estuary and a stream). At the coastal site, nitrate concentrations near the water table decreased from more than 10 mg/L beneath fields to 2 mg/L beneath a riparian forest buffer because recharge through the buffer forced water with concentrations greater than 5 mg/L to flow deeper beneath the buffer. Diurnal changes in groundwater levels up to 0.25 meters at the coastal site reflect flow from the water table into unsaturated soil where roots remove water and nitrate dissolved in it. Decreases in aquifer thickness caused by declines in the water table and decreases in horizontal hydraulic gradients from the uplands to the wetlands indicate that more than 95% of the groundwater discharged to the wetlands. Such discharge through organic soil can reduce nitrate concentrations by denitrification. Model simulations are consistent with field results, showing downward flow approaching toe slopes and surface waters to which groundwater discharges. These effects show the importance of buffer placement over use of fixed-width, streamside buffers to control nitrate concentrations.

Virginia↗

Hidden in plain sight: Migration routes of the elusive Anadyr bar-tailed godwit revealed by satellite tracking

Satellite and GPS tracking technology continues to reveal new migration patterns of birds which enables comparative studies of migration strategies and distributional information useful in conservation. Bar-tailed godwits in the East Asian–Australasian Flyway Limosa lapponica baueri and L. l. menzbieri are known for their long non-stop flights, however these populations are in steep decline. A third subspecies in this flyway, L. l. anadyrensis , breeds in the Anadyr River basin, Chukotka, Russia, and is morphologically distinct from menzbieri and baueri based on comparison of museum specimens collected from breeding areas. However, the non-breeding distribution, migration route and population size of anadyrensis are entirely unknown. Among 24 female bar-tailed godwits tracked in 2015–2018 from northwest Australia, the main non-breeding area for menzbieri , two birds migrated further east than the rest to breed in the Anadyr River basin, i.e. they belonged to the anadyrensis subspecies. During pre-breeding migration, all birds staged in the Yellow Sea and then flew to the breeding grounds in the eastern Russian Arctic. After breeding, these two birds migrated southwestward to stage in Russia on the Kamchatka Peninsula and on Sakhalin Island en route to the Yellow Sea. This contrasts with the other 22 tracked godwits that followed the previously described route of menzbieri , i.e. they all migrated northwards to stage in the New Siberian Islands before turning south towards the Yellow Sea, and onwards to northwest Australia. Since the Kamchatka Peninsula was not used by any of the tracked menzbieri birds, the 4500 godwits counted in the Khairusova–Belogolovaya estuary in western Kamchatka may well be anadyrensis . Comparing migration patterns across the three bar-tailed godwits subspecies, the migration strategy of anadyrensis lies between that of menzbieri and baueri . Future investigations combining migration tracks with genomic data could reveal how differences in migration routines are evolved and maintained.

Journal of Avian Biology↗

Oyster reef restoration in the Northern Gulf of Mexico: effect of artificial substrate and sge on nekton and benthic macroinvertebrate assemblage use

In the northern Gulf of Mexico (GOM), reefs built by eastern oysters, Crassostrea virginica, provide critical habitat within shallow estuaries, and recent efforts have focused on restoring reefs to benefit nekton and benthic macroinvertebrates. We compared nekton and benthic macroinvertebrate assemblages at historic, newly created (<5years) and old (>6years) shell and rock substrate reefs. Using crab traps, gill-nets, otter trawls, cast nets, and benthic macroinvertebrate collectors, 20 shallow reefs (<5m) in the northern GOM were sampled throughout the summer of 2011. We compared nekton and benthic assemblage abundance, diversity and composition across reef types. Except for benthic macroinvertebrate abundance, which was significantly higher on old rock reefs as compared to historic reefs, all reefs were similar to historic reefs, suggesting created reefs provide similar support of nekton and benthic assemblages as historic reefs. To determine refuge value of oyster structure for benthic macroinvertebrates compared to bare bottom, we tested preferences of juvenile crabs across depth and refuge complexity in the presence and absence of adult blue crabs (Callinectes sapidus). Juveniles were more likely to use deep water with predators present only when provided oyster structure. Provision of structural material to support and sustain development of benthic and mobile reef communities may be the most important factor in determining reef value to these assemblages, with biophysical characteristics related to reef location influencing assemblage patterns in areas with structure; if so, appropriately locating created reefs is critical.

Alabama, Florida, Louisiana, Mississippi, Texas↗

Estimating the aboveground biomass and carbon stocks of tall shrubs in a prerestoration degraded salt marsh

Wetlands play a vital role in Earth's carbon cycle and provide important ecosystem services. Their ability to perform their roles can be compromised by human activities that destroy or impair their functioning. The restoration of degraded wetlands may allow carbon cycle functioning, as well as other services, to be recovered. Predicting the potential outcomes from any restoration project requires upfront consideration, including via modeling possible changes in carbon stocks. In this study, we quantified the carbon stocks in tall shrub vegetation proliferating in a degraded salt marsh that is currently the subject of an extensive restoration project. We produced allometric models to estimate biomass and carbon stocks for three tall shrub species, which, along with other freshwater and upland species in the area, will die with continued restoration. Therefore, estimating the potential for carbon losses in biomass is important. We also developed a means of estimating carbon stocks in other nontree plants in the estuary area. Useful equations for estimating the biomass of tall shrubs are limited in general and lacking for degraded systems. Our study adds to the literature on carbon stocks in shrub species and fills a data gap for degraded ecosystems. It also contributes to the broader carbon feasibility study of the aforementioned restoration project that was designed to predict the overall net impact of the project on greenhouse gas emissions in the ecosystem.

Restoration Ecology↗

U.S. Pacific coastal wetland resilience and vulnerability to sea-level rise

We used a first-of-its-kind comprehensive scenario approach to evaluate both the vertical and horizontal response of tidal wetlands to projected changes in the rate of sea-level rise (SLR) across 14 estuaries along the Pacific coast of the continental United States. Throughout the U.S. Pacific region, we found that tidal wetlands are highly vulnerable to end-of-century submergence, with resulting extensive loss of habitat. Using higher-range SLR scenarios, all high and middle marsh habitats were lost, with 83% of current tidal wetlands transitioning to unvegetated habitats by 2110. The wetland area lost was greater in California and Oregon (100%) but still severe in Washington, with 68% submerged by the end of the century. The only wetland habitat remaining at the end of the century was low marsh under higher-range SLR rates. Tidal wetland loss was also likely under more conservative SLR scenarios, including loss of 95% of high marsh and 60% of middle marsh habitats by the end of the century. Horizontal migration of most wetlands was constrained by coastal development or steep topography, with just two wetland sites having sufficient upland space for migration and the possibility for nearly 1:1 replacement, making SLR threats particularly high in this region and generally undocumented. With low vertical accretion rates and little upland migration space, Pacific coast tidal wetlands are at imminent risk of submergence with projected rates of rapid SLR.

Science Advances↗

Migration and transformation of coastal wetlands in response to rising seas

Coastal wetlands are not only among the world’s most valued ecosystems but also among the most threatened by high greenhouse gas emissions that lead to accelerated sea level rise. There is intense debate regarding the extent to which landward migration of wetlands might compensate for seaward wetland losses. By integrating data from 166 estuaries across the conterminous United States, we show that landward migration of coastal wetlands will transform coastlines but not counter seaward losses. Two-thirds of potential migration is expected to occur at the expense of coastal freshwater wetlands, while the remaining one-third is expected to occur at the expense of valuable uplands, including croplands, forests, pastures, and grasslands. Our analyses underscore the need to better prepare for coastal transformations and net wetland loss due to rising seas.

Science Advances↗

On phytoplankton trends

P hytoplankton—unicellular algae in the surface layer of lakes and oceans—fuel the lacustrine and marine food chains and play a key role in regulating atmospheric carbon dioxide concentrations. How will rising carbon dioxide concentrations in the air and surface ocean in turn affect phytoplankton? Answering this question is crucial for projecting future climate change. However, because phytoplankton species populations appear and disappear within weeks, assessing change requires high-resolution monitoring of annual cycles over many years. Such long-term studies at coastal sites ranging from estuaries and harbors to open coastlines and islands are yielding bewildering variability, but also fundamental insights on the driving forces that underlie phytoplankton cycles.

Science↗

Suspended matter in surface waters of the Atlantic continental margin from Cape Cod to the Florida Keys

Appreciable amounts of suspended matter (> 1.0 milligram per liter) in surface waters are restricted to within a few kilometers of the Atlantic coast. Particles that escape estuaries or are discharged by rivers into the shelf region tend to travel longshoreward rather than seaward. Suspended matter farther offshore, chiefly amorphous organic particles, totals 0.1 milligram per liter or less. Soot, fly ash, processed cellulose, and other pollutants are widespread.

Atlantic Coast, Cape Cod to the Florida Keys↗