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Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado Plateau and Chihuahuan Desert

The objective of this study was to characterize the community structure and activity of N 2 -fixing microorganisms in mature and poorly developed biological soil crusts from both the Colorado Plateau and Chihuahuan Desert. Nitrogenase activity was approximately 10 and 2.5 times higher in mature crusts than in poorly developed crusts at the Colorado Plateau site and Chihuahuan Desert site, respectively. Analysis of nifH sequences by clone sequencing and the terminal restriction fragment length polymorphism technique indicated that the crust diazotrophic community was 80 to 90% heterocystous cyanobacteria most closely related to Nostoc spp. and that the composition of N 2 -fixing species did not vary significantly between the poorly developed and mature crusts at either site. In contrast, the abundance of nifH sequences was approximately 7.5 times greater (per microgram of total DNA) in mature crusts than in poorly developed crusts at a given site as measured by quantitative PCR. 16S rRNA gene clone sequencing and microscopic analysis of the cyanobacterial community within both crust types demonstrated a transition from a Microcoleus vaginatus -dominated, poorly developed crust to mature crusts harboring a greater percentage of Nostoc and Scytonema spp. We hypothesize that ecological factors, such as soil instability and water stress, may constrain the growth of N 2 -fixing microorganisms at our study sites and that the transition to a mature, nitrogen-producing crust initially requires bioengineering of the surface microenvironment by Microcoleus vaginatus .

New Mexico, Utah↗

Pore pressure response during failure in soils

Three experiments were performed on natural slopes to investigate variations of soil pore-water pressure during induced slope failure. Two sites in the Wasatch Range, Utah, and one site in the San Dimas Experimental Forest of southern California were forced to fail by artificial subsurface irrigation. The sites were instrumented with electronic piezometers and displacement meters to record induced pore pressures and movements of the slopes during failure. Piezometer records show a consistent trend of increasing pressure during the early stages of infiltration and abrupt decreases in pressure from 5 to 50 minutes before failure. Displacement meters failed to register the amount of movement, due to location and ineffectual coupling of meter pins to soil. Observations during the experiments indicate that fractures and macropores controlled the flow of water through the slope and that both water-flow paths and permeability within the slopes were not constant in space or time but changed continually during the course of the experiments.

California, Utah↗

Uranium-series and soil-geomorphic dating of the Calico archaeological site, California

Lithic specimens identified as artifacts have been recovered from near the base of the Yermo fan deposits at Calico, California. The soil on the fan surface is a strongly developed relict paleosol. Comparison of this soil with dated paleosols elsewhere in the southwestern United States suggests that the surface is about 80,000 to 125,000 yr old. Clasts near the base of the deposit are well cemented by laminated CaCO 3 that probably formed from groundwater action while the fan was still active. Uranium-thorium assays on the CaCO 3 indicate an age of 200,000 yr.

California↗

Late quaternary temperature record from buried soils of the North American Great Plains

We present the first comprehensive late Quaternary record of North American Great Plains temperature by assessing the behavior of the stable isotopic composition (δ 13 C) of buried soils. After examining the relationship between the δ 13 C of topsoil organic matter and July temperature from 61 native prairies within a latitudinal range of 46°–38°N, we applied the resulting regression equation to 64 published δ 13 C values from buried soils of the same region to construct a temperature curve for the past 12 k.y. Estimated temperatures from 12 to 10 ka (1 k.y. = 1000 14 C yr B.P.) fluctuated with a periodicity of ∼1 k.y. with two cool excursions between −4.5 and −3.5 °C and two warmer excursions between −1 and 0 °C, relative to modern. Early Holocene temperatures from ca. 10–7.5 ka were −1.0 to −2.0 °C before rising to +1.0 °C in the middle Holocene between 6.0 and 4.5 ka. After a cool interlude from 4.2 to 2.6 ka, when temperatures dropped to slightly below modern, another warm interval ensued from 2.6 to 1 ka as temperatures increased to ∼+0.5 °C. A final decline in temperature to below modern occurred beginning ca. 0.5 ka. Cooler than present temperatures in the Great Plains indicate telecommunications with cool-water episodes in the Gulf of Mexico and North Atlantic potentially governed by a combination of glacial meltwater pulses and low solar irradiance.

Geology↗

Four centuries of soil carbon and nitrogen change after stand-replacing fire in a forest landscape in the western Cascade Range of Oregon

Episodic stand-replacing wildfire is a significant disturbance in mesic and moist Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) forests of the Pacific Northwest. We studied 24 forest stands with known fire histories in the western Cascade Range in Oregon to evaluate long-term impacts of stand-replacing wildfire on carbon (C) and nitrogen (N) pools and dynamics within the forest floor (FF, Oe and Oa horizons) and the mineral soil (0-10 cm). Twelve of our stands burned approximately 150 years ago ('young'), and the other 12 burned approximately 550 years ago ('old'). Forest floor mean C and N pools were significantly greater in old stands than young stands (N pools: 1823 ?? 132 kg??ha-1 vs. 1450 ?? 98 kg??ha -1; C pools: 62 980 ?? 5403 kg??ha-1 vs. 49 032 ?? 2965 kg??ha-1, mean ?? SE) as a result of significant differences in FF mass. Forest floor C and N concentrations and C/N ratios did not differ by time since fire, yet potential N mineralization rates were significantly higher in FF of old sites. Old and young mineral soils did not differ significantly in pools, concentrations, C/N ratios, or cycling rates. Our results suggest that C and N are sequestered in FF of Pacific Northwest Douglas-fir forests over long (???400 year) intervals, but that shorter fire return intervals may prevent that accumulation. ?? 2008 NRC.

Canadian Journal of Forest Research↗

Solute profiles in soils, weathering gradients and exchange equilibrium/disequilibrium

The spatial and temporal changes in hydrology and pore water elemental and 87/86 Sr compositions were used to determine contemporary weathering rates in a 65 to 226 ky old soil chronosequence formed from granitic sediments deposited on marine terraces along coastal California. Cl-corrected Na, K and Si increased with depth denoting inputs from the weathering of plagioclase and K-feldspar. Solute 87/86 Sr exhibited progressive mixing of sea water-dominated precipitation with inputs from less radiogenic plagioclase. Linear approximations to these weathering gradients were used to determine plagioclase weathering rates of between 0.38 and 8.9×10 −15 moles m −2 s −1 . The lack of corresponding weathering gradients for Ca and Sr indicated short-term equilibrium with the clay ion exchange pool which requires periodic resetting by natural perturbations to maintain continuity, in spite of soil composition changes reflecting the effects of long-term weathering.

Mineralogical Magazine↗

Geochemical legacies and the future health of cities: A tale of two neurotoxins in urban soils

The past and future of cities are inextricably linked, a linkage that can be seen clearly in the long-term impacts of urban geochemical legacies. As loci of population as well as the means of employment and industry to support these populations, cities have a long history of co-locating contaminating practices and people, sometimes with negative implications for human health. Working at the intersection between environmental processes, communities, and human health is critical to grapple with environmental legacies and to support healthy, sustainable, and growing urban populations. An emerging area of environmental health research is to understand the impacts of chronic exposures and exposure mixtures—these impacts are poorly studied, yet may pose a significant threat to population health. Acute exposure to lead (Pb), a powerful neurotoxin to which children are particularly susceptible, has largely been eliminated in the U.S. and other countries through policy-based restrictions on leaded gasoline and lead-based paints. But the legacy of these sources remains in the form of surface soil Pb contamination, a common problem in cities and one that has only recently emerged as a widespread chronic exposure mechanism in cities. Some urban soils are also contaminated with another neurotoxin, mercury (Hg). The greatest human exposure to Hg is through fish consumption, so eating fish caught in urban areas presents risks for toxic Hg exposure. The potential double impact of chronic exposure to these two neurotoxins is pronounced in cities. Overall, there is a paradigmatic shift from reaction to and remediation of acute exposures towards a more nuanced understanding of the dynamic cycling of persistent environmental contaminants with resultant widespread and chronic exposure of inner-city dwellers, leading to chronic toxic illness and disability at substantial human and social cost.

Indiana↗

Mid-infrared diffuse reflectance spectroscopic examination of charred pine wood, bark, cellulose, and lignin: Implications for the quantitative determination of charcoal in soils

Fires in terrestrial ecosystems produce large amounts of charcoal that persist in the environment and represent a substantial pool of sequestered carbon in soil. The objective of this research was to investigate the effect of charring on mid-infrared spectra of materials likely to be present in forest fires in order to determine the feasibility of determining charred organic matter in soils. Four materials (cellulose, lignin, pine bark, and pine wood) and char from these materials, created by charring for various durations (1 to 168 h) and at various temperatures (200 to 450 °C), were studied. Mid-infrared spectra and measures of acidity (total acids, carboxylic acids, lactones, and phenols as determined by titration) were determined for 56 different samples (not all samples were charred at all temperatures/durations). Results showed spectral changes that varied with the material, temperature, and duration of charring. Despite the wide range of spectral changes seen with the differing materials and length/temperature of charring, partial least squares calibrations for total acids, carboxylic acids, lactones, and phenols were successfully created (coefficient of determination and root mean squared deviation of 0.970 and 0.380; 0.933 and 0.227; 0.976 and 0.120; and 0.982 and 0.101 meq/g, respectively), indicating that there is a sufficient commonality in the changes to develop calibrations without the need for unique calibrations for each specific material or condition of char formation.

Applied Spectroscopy↗

Occurrence of pesticides in water, sediment, and soil from the Yolo Bypass, California

The objective of this study was to evaluate the potential sources of pesticides to the Yolo Bypass, including those that could potentially impact critical life stages of resident fish. To assess direct inputs during inundation, pesticide concentrations were analyzed in water and suspended and bed sediment samples collected from source watersheds during high-flow events. To understand inputs from direct application on fields, pesticides were also measured in soils collected from several sites within the Bypass. Thirteen current-use pesticides were detected in water samples collected in 2004 with the highest pesticide concentrations observed at the input sites to the Bypass during high-flow. Hexazinone and simazine were detected at all sites and at some of the highest concentrations. In bed and suspended sediments collected in 2004 and 2005, thirteen current-use pesticides were detected along with DDT and its metabolites. Trifluralin, DDE, and DDT were highest in the bed sediments, whereas oxyfluorfen and thiobencarb were highest in the suspended sediments. With the exception of the three organochlorine insecticides, suspended sediments had higher pesticide concentrations compared to bed sediments, indicating the potential for pesticide transport especially during high-flow events. Soil samples were dominated by DDT and its degradates but also contained a variety of current-use pesticides typically at lower concentrations. The types of pesticides detected in water and sediments were correlated with agricultural application in each watershed. Understanding the distribution of pesticides between the water and sediment is important in assessing their fate and transport within the Bypass, and in evaluating the exposure and potential effects to resident fish.

California↗

Simulation of broadband ground motion including nonlinear soil effects for a magnitude 6.5 earthquake on the Seattle fault, Seattle, Washington

The Seattle fault poses a significant seismic hazard to the city of Seattle, Washington. A hybrid, low-frequency, high-frequency method is used to calculate broadband (0-20 Hz) ground-motion time histories for a M 6.5 earthquake on the Seattle fault. Low frequencies (1 Hz) are calculated by a stochastic method that uses a fractal subevent size distribution to give an ω -2 displacement spectrum. Time histories are calculated for a grid of stations and then corrected for the local site response using a classification scheme based on the surficial geology. Average shear-wave velocity profiles are developed for six surficial geologic units: artificial fill, modified land, Esperance sand, Lawton clay, till, and Tertiary sandstone. These profiles together with other soil parameters are used to compare linear, equivalent-linear, and nonlinear predictions of ground motion in the frequency band 0-15 Hz. Linear site-response corrections are found to yield unreasonably large ground motions. Equivalent-linear and nonlinear calculations give peak values similar to the 1994 Northridge, California, earthquake and those predicted by regression relationships. Ground-motion variance is estimated for (1) randomization of the velocity profiles, (2) variation in source parameters, and (3) choice of nonlinear model. Within the limits of the models tested, the results are found to be most sensitive to the nonlinear model and soil parameters, notably the over consolidation ratio.

Washington↗

Biological soil crusts across disturbance-recovery scenarios: effect of grazing regime on community dynamics

Grazing represents one of the most common disturbances in drylands worldwide, affecting both ecosystem structure and functioning. Despite the efforts to understand the nature and magnitude of grazing effects on ecosystem components and processes, contrasting results continue to arise. This is particularly remarkable for the biological soil crust (BSC) communities (i.e., cyanobacteria, lichens, and bryophytes), which play an important role in soil dynamics. Here we evaluated simultaneously the effect of grazing impact on BSC communities (resistance) and recovery after livestock exclusion (resilience) in a semiarid grassland of Central Mexico. In particular, we examined BSC species distribution, species richness, taxonomical group cover (i.e., cyanobacteria, lichen, bryophyte), and composition along a disturbance gradient with different grazing regimes (low, medium, high impact) and along a recovery gradient with differently aged livestock exclosures (short-, medium-, long-term exclusion). Differences in grazing impact and time of recovery from grazing both resulted in slight changes in species richness; however, there were pronounced shifts in species composition and group cover. We found we could distinguish four highly diverse and dynamic BSC species groups: (1) species with high resistance and resilience to grazing, (2) species with high resistance but low resilience, (3) species with low resistance but high resilience, and (4) species with low resistance and resilience. While disturbance resulted in a novel diversity configuration, which may profoundly affect ecosystem functioning, we observed that 10 years of disturbance removal did not lead to the ecosystem structure found after 27 years of recovery. These findings are an important contribution to our understanding of BCS dynamics from a species and community perspective placed in a land use change context.

Ecological Applications↗

Legacy effects in linked ecological-soil-geomorphic systems of drylands

A legacy effect refers to the impacts that previous conditions have on current processes or properties. Legacies have been recognized by many disciplines, from physiology and ecology to anthropology and geology. Within the context of climatic change, ecological legacies in drylands (eg vegetative patterns) result from feedbacks between biotic, soil, and geomorphic processes that operate at multiple spatial and temporal scales. Legacy effects depend on (1) the magnitude of the original phenomenon, (2) the time since the occurrence of the phenomenon, and (3) the sensitivity of the ecological–soil–geomorphic system to change. Here we present a conceptual framework for legacy effects at short-term (days to months), medium-term (years to decades), and long-term (centuries to millennia) timescales, which reveals the ubiquity of such effects in drylands across research disciplines.

Frontiers in Ecology and the Environment↗

Health status and relative exposure of mule deer and white-tailed deer to soil contaminants at the rocky mountain arsenal

We evaluated the health of 18 radio-collared deer [13 mule deer ( Odocoileus hemionus ) and 5 white-tailed deer ( O. virginianus )] from the Rocky Mountain Arsenal, near Denver, Colorado, USA, a Superfund site contaminated with a variety of materials, including organochlorine pesticides, metals, and nerve gas production by-products. Radio-collared deer were tracked for 1 to 3 years (1989–1992) to identify relative exposure to contaminants based on telemetry locations plotted on grid maps depicting known soil contaminant concentrations. At the end of the study, all animals were in fair or good body condition at the time of necropsy. Mean ages of mule deer and white-tailed deer were 7.4 (range 4–12) and 10.6 years (range 5–17), respectively. At necropsy, tissues were collected from the deer for serology, histopathology, and analysis for eight chlorinated hydrocarbons and two metals. Detectable residues of mercury were found in the kidneys of 10 deer (range 0.055–0.096 μg/g), dieldrin was found in fat ( n = 9) (range 0.02–0.72 μg/g), liver ( n = 4) (range 0.017–0.12 μg/g), and brain ( n = 1, 0.018 μg/g), and DDE was found in the muscle of one animal (0.02 μg/g). Relative exposure estimates derived from telemetry and soil contamination data were correlated with tissue levels of dieldrin ( p < 0.001) and mercury ( p = 0.05). Two mule deer had severe testicular atrophy, and one of these animals also had antler deformities. The prevalence of antibodies against epizootic hemorrhagic disease serotype 2 was 85%.

Colorado↗

Catchment disturbance and stream metabolism: Patterns in ecosystem respiration and gross primary production along a gradient of upland soil and vegetation disturbance

Catchment characteristics determine the inputs of sediments and nutrients to streams. As a result, natural or anthropogenic disturbance of upland soil and vegetation can affect instream processes. The Fort Benning Military Installation (near Columbus, Georgia) exhibits a wide range of upland disturbance levels because of spatial variability in the intensity of military training. This gradient of disturbance was used to investigate the effect of upland soil and vegetation disturbance on rates of stream metabolism (ecosystem respiration rate [ER] and gross primary production rate [GPP]). Stream metabolism was measured using an open-system, single-station approach. All streams were net heterotrophic during all seasons. ER was highest in winter and spring and lowest in summer and autumn. ER was negatively correlated with catchment disturbance level in winter, spring, and summer, but not in autumn. ER was positively correlated with abundance of coarse woody debris, but not significantly related to % benthic organic matter. GPP was low in all streams and generally not significantly correlated with disturbance level. Our results suggest that the generally intact riparian zones of these streams were not sufficient to protect them from the effect of upland disturbance, and they emphasize the role of the entire catchment in determining stream structure and function. ?? 2005 by The North American Benthological Society.

Journal of the North American Benthological Societ↗

Field method for the determination of zinc in soils

A method is described for the field estimation of total zinc in soils. A small sample of soil is fused with potassium bisulfate, the fused mass dissolved in water, buffered at pH 4 to 5.5 with acetate buffer, and sodium thiosulfate added to form complex ions with metals that might cause interference. Measured increments of the sample solution are added to a carbon-tetrachloride-dithizone solution, with vigorous shaking after each addition, until a standard color is obtained in the organic phase. Under favorable conditions up to 60 determinations per day can be made by one man. Comparisons of data obtained by the field method with accurate laboratory analyses of the same samples indicate that the method is sufficiently reliable for reconnaissance surveys.

Economic Geology↗

A case study of soil gases as an exploration guide in glaciated terrain: Crandon massive sulfide deposit, Wisconsin

The Crandon massive sulfide deposit is covered by as much as 65 m of glacial drift. Soil gas was sampled at a depth of 0.5 m along several traverses over the deposit. Gases showing anomalies that correlate with the underlying deposit include CO 2 , CH 4 , and O 2 . CO 2 and CH 4 show positive anomalies with a background/anomaly ratio as high as 1 to 25, whereas O 2 shows negative anomalies. Oxidation of the sulfides with the production of sulfate is the probable chemical reaction producing some of the gas anomalies. The CH 4 anomalies may result from thermal cracking of hydrocarbon precursors. These results indicate that measurement of soil gases should provide a useful exploration tool in glacial terrain.

Economic Geology↗

A comparison of four geophysical methods for determining the shear wave velocity of soils

The Missouri Department of Transportation (MoDOT) routinely acquires seismic cone penetrometer (SCPT) shear wave velocity control as part of the routine investigation of soils within the Mississippi Embayment. In an effort to ensure their geotechnical investigations are as effective and efficient as possible, the SCPT tool and several available alternatives (crosshole [CH]; multichannel analysis of surface waves [MASW]; and refraction microtremor [ReMi]) were evaluated and compared on the basis of field data acquired at two test sites in southeast Missouri. These four methods were ranked in terms of accuracy, functionality, cost, other considerations, and overall utility. It is concluded that MASW data are generally more reliable than SCPT data, comparable to quality ReMi data, and only slightly less accurate than CH data. However, the other advantages of MASW generally make it a superior choice over the CH, SCPT, and ReMi methods for general soil classification purposes to depths of 30 m. MASW data are less expensive than CH data and SCPT data and can normally be acquired in areas inaccessible to drill and SCPT rigs. In contrast to the MASW tool, quality ReMi data can be acquired only in areas where there are interpretable levels of "passive" acoustic energy and only when the geophone array is aligned with the source(s) of such energy.

Environmental & Engineering Geoscience↗