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At least 1,297 records · Page 72Linked to original sources
USGS2022

Alaskan Yelloweye Rockfish fecundity revealed through an automated egg count and digital imagery method

Spawning stock biomass (SSB) is often used as an index for reproductive potential (RP) in fisheries stock assessments. This method assumes that mature female biomass is proportional to total egg production and implies that (1) the fecundity–length relationship follows a cubic function or (2) relative fecundity is constant. For many marine fishes, adequate fecundity estimates to evaluate these relationships are lacking. This study estimated fecundity and fecundity relationships for Yelloweye Rockfish Sebastes ruberrimus and evaluated an automated method of counting eggs and larvae. We collected Yelloweye Rockfish ovaries ( N = 90) from the northern Gulf of Alaska, including Prince William Sound, Alaska, during 2018–2019 and used the gravimetric method and image analysis software to count eggs from digital camera images. To evaluate the speed, accuracy, and precision of the automated counting procedure, one-third of the gravimetric samples were also manually counted. Image analysis software was approximately four times faster but equally accurate and precise for fecundity estimates relative to manual counts. Fecundity ranged from 53,249 to 3.052 × 10 6 eggs (mean ± SD = 896,762 ± 699,504 eggs), and relative fecundity increased with female FL and ranged from 68 to 435 eggs/g of body weight (mean ± SD = 226 ± 87 eggs/g). The use of SSB for Yelloweye Rockfish stock assessment could underestimate the contribution to egg production by larger (>5.6-kg) females, overestimate the contribution by smaller females, and lead to biased biological reference points. This study provides critical information to more realistically model RP and improve stock assessment inputs for the development of harvest control rules for Yelloweye Rockfish. Additionally, the use of image analysis software to count eggs in digital images proved to be an effective fecundity estimation method that could be applied to other highly fecund fish species for which the time demand of manual counting methods would be prohibitive.

Alaska↗
USGS2023

Spawning locations, movements, and potential for stock mixing of walleye in Green Bay, Lake Michigan

Effective fishery management in large systems relies on understanding how individual stocks contribute to a fishery over spatial and temporal scales. The current conceptual model for management of Walleye Sander vitreus in Green Bay designates Walleye in the northern and southern parts of the bay as distinct stocks, with little mixing between the northern and southern fisheries, and assumes that Walleye in both northern and southern Green Bay primarily spawn in tributaries as opposed to shoreline or offshore reef areas. We used acoustic telemetry to test this conceptual model for Walleye management in Green Bay. Telemetry indicated that the majority of Green Bay Walleye use tributaries for spawning. However, many individuals were assigned to open-water spawning locations during consecutive years in both northern (26%) and southern (21%) Green Bay, suggesting that open-water spawners may represent a larger proportion of the Walleye stocks than previously thought. Differential movement was observed between northern and southern portions of Green Bay, with 56% of Walleye tagged in northern Green Bay crossing receiver lines to move south compared to only 19% of Walleye tagged in southern Green Bay crossing receiver lines to move north. Walleye typically transitioned across these boundaries in summer and fall, suggesting that stock contributions to the fishery in each zone may differ seasonally. Differential movements of northern Green Bay Walleye may be influenced by broad-scale differences in habitat and prey availability, which are likely related to the differential effects of dreissenid mussel invasion in Green Bay. Our results suggest that adjustment of monitoring efforts to account for open-water spawners may provide a more complete picture of stock status. Additionally, more research examining potential food web effects of northern Green Bay Walleye moving into southern Green Bay may be needed to determine how these movements might influence other important species.

Wisconsin↗
USGS2023

Estimates of adult Lake Trout mortality from coded wire tags in a population with developing natural reproduction in southern Lake Michigan

Objective Overfishing and Sea Lamprey Petromyzon marinus predation led to extirpation of Lake Trout Salvelinus namaycush from Lake Michigan in the 1950s. Large populations of hatchery‐reared fish were developed by the 1970s, but natural reproduction was limited until the early 2000s when it began to increase in the southern main basin. Hypothesizing that the relatively low mortality of spawning‐aged fish contributed to this reproductive success, we estimated the total annual mortality rate for this population. Methods We used catch curves to estimate the total instantaneous mortality rate Z using coded wire tags, which provided definitive ages. We made separate estimates from fish collected in three on‐going surveys: a spring gill‐net survey, a fall gill‐net spawning survey, and a sport fishery survey. Result Our estimates of Z ± SE were 0.297 ± 0.019, 0.239 ± 0.009, and 0.205 ± 0.007 for the spring, spawning, and sport fishery surveys, respectively. We suggest that the mean Z ± SE of all survey estimates of 0.247 ± 0.027 would be a reasonable estimate for this population, which equates to a total annual mortality of 22 ± 3%. This estimate is in the low range of rates reported for the species and is in the same range as other populations in the Great Lakes with well‐established natural reproduction. Conclusion We concluded that these low total mortality rates contributed to the reproductive success in southern Lake Michigan through increasing spawning stock density and age structure and that previous estimates of another important population parameter, the instantaneous natural mortality rate M , were too high. Estimates of M ranged from 0.210 to 0.240 and were based on the Pauly equation, a growth‐ and temperature‐based estimator. We suggest maximum‐age‐based estimators of M are more appropriate for Lake Trout. Several alternative maximum‐age‐based estimators produced estimates for M of 0.132–0.058, all of which are more compatible with our estimate of Z .

Lake Michigan↗
USGS2024

Handling effects on dispersal of PIT-tagged Flannelmouth Sucker

Objective Handling and tagging migrating fish might alter their behavior, limiting inference from mark–recapture studies. Posthandling flight of tributary spawning Flannelmouth Sucker Catostomus latipinnis was previously identified in Coal Creek in the upper Colorado River basin. Our objective was to determine if similar issues were present at McElmo Creek in the San Juan River basin. Methods We compared emigration timing of Flannelmouth Sucker that had been handled and tagged with passive integrated transponder tags during their tributary spawning run to individuals tagged in previous years and detected both entering and exiting the tributary. Linear mixed-effects models were used to examine intrinsic and extrinsic factors contributing to exit timing. Result Sex and tagging year were associated with emigration timing, but handling did not result in posthandling flight from McElmo Creek. Females exited the tributary ~3 days before males, and larger fish emigrated earlier than smaller adults. Conclusion Differences in capture technique and timing, available spawning habitat, and fish motivation across river systems may contribute to differences in posthandling emigration of tributary spawning Flannelmouth Sucker.

Colorado, Utah↗
USGS2014

Data worth and prediction uncertainty for pesticide transport and fate models in Nebraska and Maryland, United States

BACKGROUND Complex environmental models are frequently extrapolated to overcome data limitations in space and time, but quantifying data worth to such models is rarely attempted. The authors determined which field observations most informed the parameters of agricultural system models applied to field sites in Nebraska (NE) and Maryland (MD), and identified parameters and observations that most influenced prediction uncertainty. RESULTS The standard error of regression of the calibrated models was about the same at both NE (0.59) and MD (0.58), and overall reductions in prediction uncertainties of metolachlor and metolachlor ethane sulfonic acid concentrations were 98.0 and 98.6% respectively. Observation data groups reduced the prediction uncertainty by 55–90% at NE and by 28–96% at MD. Soil hydraulic parameters were well informed by the observed data at both sites, but pesticide and macropore properties had comparatively larger contributions after model calibration. CONCLUSIONS Although the observed data were sparse, they substantially reduced prediction uncertainty in unsampled regions of pesticide breakthrough curves. Nitrate evidently functioned as a surrogate for soil hydraulic data in well-drained loam soils conducive to conservative transport of nitrogen. Pesticide properties and macropore parameters could most benefit from improved characterization further to reduce model misfit and prediction uncertainty. RESULTS: The standard error of regression of the calibrated models was about the same at both NE (0.59) and MD (0.58), and overall reductions in prediction uncertainties of metolachlor and metolachlor ethane sulfonic acid concentrations were 98.0 and 98.6% respectively. Observation data groups reduced the prediction uncertainty by 55–90% at NE and by 28–96% at MD. Soil hydraulic parameters were well informed by the observed data at both sites, but pesticide and macropore properties had comparatively larger contributions after model calibration. CONCLUSIONS: Although the observed data were sparse, they substantially reduced prediction uncertainty in unsampled regions of pesticide breakthrough curves. Nitrate evidently functioned as a surrogate for soil hydraulic data in well-drained loam soils conducive to conservative transport of nitrogen. Pesticide properties and macropore parameters could most benefit from improved characterization further to reduce model misfit and prediction uncertainty.

Maryl;Nebraska↗
USGS2017

Crustal structure interpreted from magnetic anomalies

In this review, we discuss publications during the last quadrennium (1987–1990) that used aeromagnetic data, marine magnetic data, satellite magnetic data, and rock magnetic and petrologic data to provide information on the sources of magnetic anomalies. Abstracts and papers by non‐U.S. authors are not described. The publications reviewed reflect increased integration of rock magnetic property and petrologic studies with magnetic anomaly interpretation studies, particularly in deep crustal magnetization, exploration for hydrocarbons, and inversion of marine magnetic anomalies. Interpretations of aeromagnetic data featuring image display techniques and using the horizontal gradient method for locating magnetization boundaries became standard. The magnetic anomaly map of North America appeared, the first such map of an entire continent. MAGSAT data contributed to the development of a new model for the magnetization of the oceanic crust. Forward modeling of sources of magnetic anomalies contributed to a wide range of geologic investigations on land, and inverse magnetic modeling techniques became popular for marine geologic investigations.

Reviews of Geophysics↗
USGS2011

Groundwater influences on the distribution and abundance of riverine smallmouth bass, Micropterus dolomieu , in pasture landscapes of the midwestern USA

This study examined how spring-flow (SF) contributions to streams related to the distribution and abundance of smallmouth bass Micropterus dolomieu in a predominately pasture landscape in Missouri, USA. Stream segments (N=13) with similar landscape characters were classified by SF volume into high SF (HSF) or low SF (LSF) groups. The densities of smallmouth bass, channel unit (CU) use and temperature-selection patterns were assessed for several life stages and frequency distributions for age 0 fish. More smallmouth bass were present in stream segments with HSF influence. Age 0 fish were twice as likely to be present in HSF stream segments. Older age classes were present in stream reaches independent of SF contribution. For all age classes, the use of particular CUs did not depend on SF influence. All age classes were more likely to be present in pools than other CUs. Microhabitat temperature selection differed among age classes. Age 0 fish selected warmer temperatures with a gradual shift towards cooler temperatures for older age classes. The length frequency of age 0 fish was skewed towards larger individuals in streams with limited SF influence, whereas the length frequency in HSF stream segments was skewed towards smaller individuals. The benefits of significant groundwater via SF influence seem to be related to increased hatch or survival of age 0 fish and the availability of optimal temperatures for adult smallmouth bass growth. Thermal refugia and stable flows provided by springs should be recognised for their biological potential to provide suitable habitat as climate change and other land-use alterations increase temperature regimes and alter flow patterns.

River Research and Applications↗
USGS2014

Use of dynamic occupancy models to assess the response of Darters (Teleostei: Percidae) to varying hydrothermal conditions in a southeastern United States tailwater

During the past 100 years, most large rivers in North America have been altered for flood control, hydropower, navigation or water supply development. Although these activities clearly provide important human services, their associated environmental disturbances can profoundly affect stream-dwelling organisms. We used dynamic multi-species occupancy models combined with a trait-based approach to estimate the influence of site-level and species-level characteristics on patch dynamic rates for 15 darter species native to the Elk River, a large, flow-regulated Tennessee River tributary in Tennessee and Alabama. Dynamic occupancy modelling results indicated that for every 2.5 °C increase in stream temperature, darters were 3.94 times more likely to colonize previously unoccupied stream reaches. Additionally, large-bodied darter species were 3.72 times more likely to colonize stream reaches compared with small-bodied species, but crevice-spawning darter species were 5.24 times less likely to colonize previously unoccupied stream reaches. In contrast, darters were 2.21 times less likely to become locally extinct for every 2.5 °C increase in stream temperature, but high stream discharge conditions elevated the risk of local extinction. Lastly, the presence of populations in neighbouring upstream study reaches contributed to a lower risk of extinction, whereas the presence of populations in neighbouring downstream study reaches contributed to higher rates of colonization. Our study demonstrates the application of a trait-based approach combined with a metapopulation framework to assess the patch dynamics of darters in a regulated river. Results from our study will provide a baseline for evaluating the ecological consequences of alternative dam operations.

River Research and Applications↗
USGS2014

Influence of riparian and watershed alterations on sandbars in a Great Plains river

Anthropogenic alterations have caused sandbar habitats in rivers and the biota dependent on them to decline. Restoring large river sandbars may be needed as these habitats are important components of river ecosystems and provide essential habitat to terrestrial and aquatic organisms. We quantified factors within the riparian zone of the Kansas River, USA, and within its tributaries that influenced sandbar size and density using aerial photographs and land use/land cover (LULC) data. We developed, a priori , 16 linear regression models focused on LULC at the local, adjacent upstream river bend, and the segment (18–44 km upstream) scales and used an information theoretic approach to determine what alterations best predicted the size and density of sandbars. Variation in sandbar density was best explained by the LULC within contributing tributaries at the segment scale, which indicated reduced sandbar density with increased forest cover within tributary watersheds. Similarly, LULC within contributing tributary watersheds at the segment scale best explained variation in sandbar size. These models indicated that sandbar size increased with agriculture and forest and decreased with urban cover within tributary watersheds. Our findings suggest that sediment supply and delivery from upstream tributary watersheds may be influential on sandbars within the Kansas River and that preserving natural grassland and reducing woody encroachment within tributary watersheds in Great Plains rivers may help improve sediment delivery to help restore natural river function.

River Research and Applications↗
USGS2021

Does where they start affect where they finish? A multimethod investigation of the role of stocking location on survival and dispersal of hatchery-reared Lake Sturgeon in Missouri River tributaries

Despite ongoing Lake Sturgeon recovery efforts, little is known about the role of stocking location on survival and dispersal to nursery habitats. We stocked age-0 Lake Sturgeon at four sites in two adjacent Missouri River tributaries and used telemetry to examine whether survival and dispersal differed among stocking sites and rivers. Survival estimates from Barker Cormack-Jolly-Seber models that incorporated both receiver detections and auxiliary manual detections were higher than spatial capture-recapture models that only included receiver detections. Barker model overwinter survival averaged 53% and provided information to adjust individual censoring in spatial capture-recapture model dispersal estimates. Within the two rivers, stocking site had little effect on activity centers with individuals from both sites converging upon similar locations by the end of the study period. However, dispersal distance and direction differed among stocking locations. Our overwinter survival estimates of stocked age-0 Lake Sturgeon in Missouri River tributaries were equal to or higher than other studied populations suggesting stocked juveniles may be contributing to the recovering population. Tributaries were important overwintering nursery locations with high stream fidelity that may contribute to future homing among adults.

Missouri↗
USGS2023

High-resolution thermal imagery reveals how interactions between crown structure and genetics shape plant temperature

Understanding interactions between environmental stress and genetic variation is crucial to predict the adaptive capacity of species to climate change. Leaf temperature is both a driver and a responsive indicator of plant physiological response to thermal stress, and methods to monitor it are needed. Foliar temperatures vary across leaf to canopy scales and are influenced by genetic factors, challenging efforts to map and model this critical variable. Thermal imagery collected using unoccupied aerial systems (UAS) offers an innovative way to measure thermal variation in plants across landscapes at leaf-level resolutions. We used a UAS equipped with a thermal camera to assess temperature variation among genetically distinct populations of big sagebrush ( Artemisia tridentata ), a keystone plant species that is the focus of intensive restoration efforts throughout much of western North America. We completed flights across a growing season in a sagebrush common garden to map leaf temperature relative to subspecies and cytotype, physiological phenotypes of plants, and summer heat stress. Our objectives were to (1) determine whether leaf-level stomatal conductance corresponds with changes in crown temperature; (2) quantify genetic (i.e., subspecies and cytotype) contributions to variation in leaf and crown temperatures; and (3) identify how crown structure, solar radiation, and subspecies-cytotype relate to leaf-level temperature. When considered across the whole season, stomatal conductance was negatively, non-linearly correlated with crown-level temperature derived from UAS. Subspecies identity best explained crown-level temperature with no difference observed between cytotypes. However, structural phenotypes and microclimate best explained leaf-level temperature. These results show how fine-scale thermal mapping can decouple the contribution of genetic, phenotypic, and microclimate factors on leaf temperature dynamics. As climate-change-induced heat stress becomes prevalent, thermal UAS represents a promising way to track plant phenotypes that emerge from gene-by-environment interactions.

Idaho↗
USGS2019

New insights into the ecology of adfluvial Bull Trout and the population response to the Endangered Species Act in the North Fork Lewis River, Washington

Like many other salmonids, Bull Trout Salvelinus confluentus migratory life-history expressions are becoming increasingly rare. A critical step in effectively refining management and conservation strategies is a robust assessment of the effectiveness of such strategies and key biological information used in monitoring and recovery planning. To address this need, we integrated a variety of methods to evaluate the population demographics (abundance), vital rates (survival), and life-history characteristics (ageing, growth, spawning migrations and iteroparity) of an adfluvial Bull Trout population. We also employed our mark-recapture data to quantify if recruitment or adult survival had a greater contribution to population trends from year to year. Our results indicated Bull Trout spawning migrations vary with body size, as a considerable portion of smaller adults (<650 mm) did not spawn each year. Additionally, most spawning individuals made only one spawning migration, while <13% made three or more spawning migrations. Our abundance and survival data, which extends to the early 1990s, illustrated positive responses in survival and abundance following the protection of Bull Trout under the Endangered Species Act (1998). Over this period, we found high interannual variability in both survival and abundance, and adult survival (average = 0.45, SE = 0.04) was surprisingly lower than subadult individuals (average = 0.66, SE = 0.04), suggesting limitations at this important life stage. Our mark-recapture data also suggested the attributes driving the Bull Trout population trend (i.e., recruitment to the adult stage or adult survival) has varied through time, with declining trends in the relative contribution of recruitment. Our results provide new insights into the life-history patterns of adfluvial Bull Trout and can serve as a template to consider factors potentially limiting this and other native trout populations.

Washington↗
USGS2022

Lake Sturgeon movement after trap and transfer around two dams on the Menominee River, Wisconsin-Michigan

Fish behavior after passage or transfer around dams is a critical component in determining whether the goals of these efforts are achieved, but these behaviors are often poorly understood. An elevator was constructed in the lowermost hydroelectric dam on the Menominee River, Wisconsin–Michigan; it is the first elevator specifically designed to capture Lake Sturgeon Acipenser fulvescens for upstream transfer above two dams, providing access to high-quality spawning and early life habitat. Our objectives were to determine whether (1) Lake Sturgeon transferred upstream remained upstream for at least one spawning opportunity; (2) spawning opportunity, time to reach the next dam upstream, and residency in different segments of the river were related to sex, capture method (elevator versus electrofishing), and season of transfer; and (3) the probability of fish transitioning back downstream of the two dams varied among months. We evaluated posttransfer behaviors of 139 Lake Sturgeon that were captured in the elevator or by electrofishing, implanted with acoustic transmitters, transferred upstream (in spring or fall) from fall 2014 to spring 2017, and monitored until fall 2018 using 20–23 stationary acoustic receivers deployed throughout the river. Most Lake Sturgeon (91%) remained upstream for at least one spawning opportunity. The probability of remaining for one spawning opportunity was not related to sex, fish capture method, or season of transfer. Residency times within the two impoundments and time to reach the next dam upstream varied among individual fish. A multistate model indicated that monthly survival after upstream transfer was high and that Lake Sturgeon typically remained above both dams in late fall to early spring, with most downstream movements occurring in April and May. Our results indicate that Lake Sturgeon transferred upstream have the potential to contribute offspring that may help to bolster the Lake Sturgeon population in Lake Michigan, but additional research may help in determining whether these contributions occur.

Michigan, Wisconsin↗
USGS2002

Behavioral effects of environmental enrichment on harbor seals (Phoca vitulina concolor) and gray seals (Halichoerus grypus)

Zoos and aquariums have been incorporating environmental enrichment into their animal care programs for the past 30 years to increase mental stimulation and promote natural behaviors. However, most attempts to document the effects of enrichment on animal behavior have focused on terrestrial mammals. Staff at the National Aquarium in Baltimore conducted an investigation of the behavioral effects of enrichment on the seven harbor seals and two gray seals housed in the aquarium's outdoor seal exhibit. We expected that enrichment would change the amount of time the animals spent engaged in specific behaviors. The behaviors recorded were: resting in water, resting hauled out, maintenance, breeding display, breeding behavior, aggression, pattern swimming, random swimming, exploration, and out of sight. Activity levels (random swimming and exploration) were expected to increase, while stereotypic behaviors (pattern swimming) were expected to decrease. The frequency and duration of behaviors were documented for 90 hr in both the control phase (without enrichment) and the experimental phase (with enrichment). Statistically significant differences ( P <0.05) in the time spent in pattern swimming, random swimming, exploration, and out of sight were observed between the two phases. With enrichment, pattern swimming and out of sight decreased, while random swimming and exploration behavior increased. These findings demonstrate that enrichment can promote behaviors (random swimming and exploration) that are likely to be normal for phocids in the wild, and that may contribute to the behavioral complexity of these seals in captivity.

Zoo Biology↗
USGS1998

Evaluating landscape health: Integrating societal goals and biophysical process

Evaluating landscape change requires the integration of the social and natural sciences. The social sciences contribute to articulating societal values that govern landscape change, while the natural sciences contribute to understanding the biophysical processes that are influenced by human activity and result in ecological change. Building upon Aldo Leopold's criteria for landscape health, the roles of societal values and biophysical processes in shaping the landscape are explored. A framework is developed for indicators of landscape health and integrity. Indicators of integrity are useful in measuring biological condition relative to the condition in landscapes largely unaffected by human activity, while indicators of health are useful in evaluating changes in highly modified landscapes. Integrating societal goals and biophysical processes requires identification of ecological services to be sustained within a given landscape. It also requires the proper choice of temporal and spatial scales. Societal values are based upon inter-generational concerns at regional scales (e.g. soil and ground water quality). Assessing the health and integrity of the environment at the landscape scale over a period of decades best integrates societal values with underlying biophysical processes. These principles are illustrated in two contrasting case studies: (1) the South Platte River study demonstrates the role of complex biophysical processes acting at a distance; and (2) the Kissimmee River study illustrates the critical importance of social, cultural and economic concerns in the design of remedial action plans. In both studies, however, interactions between the social and the biophysical governed the landscape outcomes. The legacy of evolution and the legacy of culture requires integration for the purpose of effectively coping with environmental change.

Journal of Environmental Management↗
USGS2017

Role of social media and networking in volcanic crises and communication

The growth of social media as a primary and often preferred news source has contributed to the rapid dissemination of information about volcanic eruptions and potential volcanic crises as an eruption begins. Information about volcanic activity comes from a variety of sources: news organisations, emergency management personnel, individuals (both public and official) and volcano monitoring agencies. Once posted, this information is easily shared, increasing the reach to a much broader population than the original audience. The onset and popularity of social media as a vehicle for eruption information dissemination has presented many benefits as well as challenges, and points towards a need for a more unified system for information. This includes volcano observatories using social media as an official channels to distribute activity statements, forecasts and predictions on social media, in addition to the archiving of images and data activity. This chapter looks at two examples of projects that collect / disseminate information regarding volcanic crises and eruptive activity utilizing social media sources. Based on those examples, recommendations are made to volcanic observatories in relation to the use of social media as a two-way communication tool. These recommendations include: using social media as a two-way dialogue to communicate and receive information directly from the public and other sources; stating that the social media account is from an official source; and, posting types of information that the public are seeking such as images, videos and figures.

Book chapter↗
USGS2014

Metals, organic compounds, and nutrients in Long Island Sound: sources, magnitudes, trends, and impacts

Long Island Sound (LIS) is a relatively shallow estuary with a mean depth of 20 m (maximum depth 49 m) and a unique hydrology and history of pollutant loading. Those factors have contributed to a wide variety of contamination problems in its muddy sediments, aquatic life and water column. The LIS sediments are contaminated with a host of legacy and more recently released toxic compounds and elements related to past and present wastewater discharges and runoff. These include non-point and storm water runoff and groundwater discharges, whose character has changed over the years along with the evolution of its watershed and industrial history. Major impacts have resulted from the copious amounts of nutrients discharged into LIS through atmospheric deposition (N), domestic and industrial waste water flows, fertilizer releases, and urban runoff. All these sources and their effects are in essence the result of human presence and activities in the watershed, and the severity of pollutant loading and their impacts generally scales with total population in the watersheds surrounding LIS. Environmental legislation passed since the mid-to late 1900s (e.g., Clean Air Act, Clean Water Act) has had a beneficial effect, however, and contaminant loadings for many toxic organic and inorganic chemicals and nutrients have diminished over the last few decades (O’Shea and Brosnan 2000; Trench, et al, 2012; O’Connor and Lauenstein 2006; USEPA 2007). Major strides have been made in reducing the inflow of nutrients into LIS, but cultural eutrophication is still an ongoing problem and nutrient control efforts will need to continue. Nonetheless, LIS is still a heavily human impacted estuary (an ‘Urban Estuary’, as described for San Francisco Bay by Conomos, 1979), and severe changes in water quality and sediment toxicity as well as ecosystem shifts have been witnessed over the relatively short period since European colonization in the early 1600s (Koppelman et al., 1976). The main rivers that discharge into LIS are the East River in the west, the Housatonic and Connecticut rivers on the north, and the Thames River at the northeastern end of LIS, with the Quinnipiac and several other smaller rivers also coming in from Connecticut. The East River is a tidal strait that connects LIS with New York Harbor through the heart of the New York City metropolitan region. The Housatonic, Quinnipiac, Connecticut and Thames river basins drain agricultural, urban and industrial lands in a watershed that extends from Connecticut north to Canada. The Sound receives contaminants from many sources within and outside its contributing watershed, including direct discharges from coastal industries, wastewater treatment plants (WWTP), urban runoff, and atmospheric deposition. New England has a long history of industrial activity, with factories that once crowded its riverbanks and shores now having succumbed to economic forces that drove manufacturing overseas. Relict deposits with legacy pollutants in upland sediments persist and combine with modern runoff sources from an increasingly densely populated watershed, and continue to be a source of contaminants for LIS. While toxic exposure from legacy and active sources has diminished over the years as wastewater treatment has improved and industries closed or moved away, pockets of contamination still have consequences for many embayments and coves, particularly near urbanized areas of western LIS. Loading of nutrients and carbon have been of recent concern in LIS because of the extensive impacts observed since the mid-1980s. Excess nutrients not only create inhospitable conditions for higher forms of aquatic life through reduced oxygen levels and disrupting trophic dynamics, but also by altering the local biogeochemistry. As a result, the release of toxic substances into the water column may be enhanced in hypoxic waters, thus exerting a toxic effect or enhancing incorporation of toxic pollutants into the food we

Book chapter↗
USGS2015

The role of floodplain restoration in mitigating flood risk, Lower Missouri River, USA

Recent extreme floods on the Lower Missouri River have reinvigorated public policy debate about the potential role of floodplain restoration in decreasing costs of floods and possibly increasing other ecosystem service benefits. The first step to addressing the benefits of floodplain restoration is to understand the interactions of flow, floodplain morphology, and land cover that together determine the biophysical capacity of the floodplain. In this article we address interactions between ecological restoration of floodplains and flood-risk reduction at 3 scales. At the scale of the Lower Missouri River corridor (1300 km) floodplain elevation datasets and flow models provide first-order calculations of the potential for Missouri River floodplains to store floods of varying magnitude and duration. At this same scale assessment of floodplain sand deposition from the 2011 Missouri River flood indicates the magnitude of flood damage that could potentially be limited by floodplain restoration. At the segment scale (85 km), 1-dimensional hydraulic modeling predicts substantial stage reductions with increasing area of floodplain restoration; mean stage reductions range from 0.12 to 0.66 m. This analysis also indicates that channel widening may contribute substantially to stage reductions as part of a comprehensive strategy to restore floodplain and channel habitats. Unsteady 1-dimensional flow modeling of restoration scenarios at this scale indicates that attenuation of peak discharges of an observed hydrograph from May 2007, of similar magnitude to a 10 % annual exceedance probability flood, would be minimal, ranging from 0.04 % (with 16 % floodplain restoration) to 0.13 % (with 100 % restoration). At the reach scale (15–20 km) 2-dimensional hydraulic models of alternative levee setbacks and floodplain roughness indicate complex processes and patterns of flooding including substantial variation in stage reductions across floodplains depending on topographic complexity and hydraulic roughness. Detailed flow patterns captured in the 2-dimensional model indicate that most floodplain storage occurs on the rising limb of the flood as water flows into floodplain bottoms from downstream; at a later time during the rising limb this pattern is reversed and the entire bottom conveys discharge down the valley. These results indicate that flood-risk reduction by attenuation is likely to be small on a large river like the Missouri and design strategies to optimize attenuation and ecological restoration should focus on frequent floods (20–50 % annual exceedance probability). Local stage reductions are a more certain benefit of floodplain restoration but local effects are highly dependent on magnitude of flood discharge and how floodplain vegetation communities contribute to hydraulic roughness. The most certain flood risk reduction benefit of floodplain restoration is avoidance of flood damages to crops and infrastructure.

Iowa, Kansas, Minnesota, Missouri, Nebraska, South↗