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At least 127 records · Page 7Linked to original sources
USGS2009

A case of timely satellite image acquisitions in support of coastal emergency environmental response management

The synergistic application of optical and radar satellite imagery improves emergency response and advance coastal monitoring from the realm of “opportunistic” to that of “strategic.” As illustrated by the Hurricane Ike example, synthetic aperture radar imaging capabilities are clearly applicable for emergency response operations, but they are also relevant to emergency environmental management. Integrated with optical monitoring, the nearly real-time availability of synthetic aperture radar provides superior consistency in status and trends monitoring and enhanced information concerning causal forces of change that are critical to coastal resource sustainability, including flooding extent, depth, and frequency.

Journal of Coastal Research↗
USGS2016

Application of genetics and genomics to wildlife epidemiology

Wildlife diseases can have significant impacts on wildlife conservation and management. Many of the pathogens that affect wildlife also have important implications for domestic animal and human health. However, management interventions to prevent or control wildlife disease are hampered by uncertainties about the complex interactions between pathogens and free-ranging wildlife. We often lack crucial knowledge about host ecology, pathogen characteristics, and host–pathogen dynamics. The purpose of this review is to familiarize wildlife biologists and managers with the application of genetic and genomic methodologies for investigating pathogen and host biology to better understand and manage wildlife diseases. The genesis of this review was a symposium at the 2013 annual Wildlife Society Conference. We reviewed the scientific literature and used our personal experiences to identify studies that illustrate the application of genetic and genomic methods to advance our understanding of wildlife epidemiology, focusing on recent research, new techniques, and innovative approaches. Using examples from a variety of pathogen types and a broad array of vertebrate taxa, we describe how genetics and genomics can provide tools to detect and characterize pathogens, uncover routes of disease transmission and spread, shed light on the ways that disease susceptibility is influenced by both host and pathogen attributes, and elucidate the impacts of disease on wildlife populations. Genetic and increasingly genomic methodologies will continue to contribute important insights into pathogen and host biology that will aid efforts to assess and mitigate the impacts of wildlife diseases on global health and conservation of biodiversity.

Journal of Wildlife Management↗
USGS2021

Progress towards integrating an understanding of chemical ecology into sea lamprey control

The sea lamprey, Petromyzon marinus , is a destructive invader in the Laurentian Great Lakes that relies on several complex chemical cues to complete their life cycle. The central roles of chemical cues in sea lamprey reproduction provide opportunities to leverage knowledge of sea lamprey chemical ecology when developing alternative or supplemental strategies for sea lamprey control. A solid foundation has been laid regarding sea lamprey chemical ecology, with recent advances in our understanding of the migratory pheromone, male sex pheromone, and alarm cues broadening our fundamental understanding of the diversity, complexity, and evolution of chemical cues used by sea lamprey. Additionally, research applying semiochemicals in differing management scenarios has provided useful insights into the challenges of incorporating chemical cues into the sea lamprey control program. Here, we synthesize new findings related to fundamental research of chemosensory cues along with knowledge learned from management-based tests and explore options for integrating an understanding of chemical ecology into sea lamprey control in light of new knowledge. We also highlight current unknowns and future research needs that should be addressed prior to implementation of sea lamprey chemical ecology into the sea lamprey control program.

Great Lakes↗
USGS2011

Inference for occupancy and occupancy dynamics

This chapter deals with the estimation of occupancy as a state variable to assess the status of, and track changes in, species distributions when sampling with camera traps. Much of the recent interest in occupancy estimation and modeling originated from the models developed by MacKenzie et al. (2002, 2003), although similar methods were developed independently (Azuma et al. 1990; Bayley and Petersen 2001; Nichols and Karanth, 2002; Tyre et al. 2003), all of which deal with species occurrence information and imperfect detection. Less than a decade after these publications, the modeling and estimation of species occurrence and occupancy dynamics have increased significantly. Special features of scientific journals have explored innovative uses of detection–nondetection data with occupancy models (Vojta 2005), and an entire volume has synthesized the use and application of occupancy estimation methods (MacKenzie et al. 2006). Reviews of the topical concepts, philosophical considerations, and various sampling designs that can be used for occupancy estimation are now readily available for a range of audiences (MacKenzie and Royle 2005; MacKenzie et al. 2006; Bailey et al. 2007; Royle and Dorazio 2008; Conroy and Carroll 2009; Kendall and White 2009; Hines et al. 2010; Link and Barker 2010). As a result, it would be pointless here to recast all that these publications have so eloquently articulated, but that said, a review of any scientific topic requires sufficient context and relevant background information, especially when relatively new methodologies and techniques such as occupancy estimation and camera traps are involved. This is especially critical in a digital age where new information is published at warp speed, making it increasingly difficult to stay abreast of theoretical advances and research developments.

Book chapter↗
USGS2011

Catfish science: Status and trends in the 21st century

Catfish science, the study of the fish order Siluriformes, is a diverse and expanding field in terms of advances and breadth of topics. We compiled literature from primary fisheries journals as an index of interest and advances in catfish science to examine temporal trends in the field. The number of catfish scientific publications varied over the past century with strong peaks during 1975–1979 and 2005–2010, which may be the result of interactive scientific and societal influences. Catfish biology was the predominant publication topic until the late 1990s, when ecology, techniques, and management publications became more prevalent. Articles on catfish ecology were most numerous in both the first and second international catfish symposia, but publications on techniques and conservation were more numerous in the second catfish symposium than the first. We summarize the state of knowledge, recent advances, and areas for future attention among topics in catfish science, including sampling and aging techniques, population dynamics, ecology, fisheries management, species diversity, nonnative catfish, and human dimensions, with an emphasis on the gains in this second symposium. Areas that we expect to be pursued in the future are development of new techniques and validation of existing methods; expansion of research to less-studied catfish species; broadening temporal, spatial, and organizational scales; interdisciplinary approaches; and research on societal views and constituent demands. Meeting these challenges will require scientists to span beyond their professional comfort zones to effectively reach higher standards. We look forward to the coming decade and the many advances in the conservation, ecology, and management of catfish that will be shared.

Conference Paper↗
USGS2012

Mapping river bathymetry with a small footprint green LiDAR: Applications and challenges

Airborne bathymetric Light Detection And Ranging (LiDAR) systems designed for coastal and marine surveys are increasingly sought after for high-resolution mapping of fluvial systems. To evaluate the potential utility of bathymetric LiDAR for applications of this kind, we compared detailed surveys collected using wading and sonar techniques with measurements from the United States Geological Survey’s hybrid topographic⁄ bathymetric Experimental Advanced Airborne Research LiDAR (EAARL). These comparisons, based upon data collected from the Trinity and Klamath Rivers, California, and the Colorado River, Colorado, demonstrated that environmental conditions and postprocessing algorithms can influence the accuracy and utility of these surveys and must be given consideration. These factors can lead to mapping errors that can have a direct bearing on derivative analyses such as hydraulic modeling and habitat assessment. We discuss the water and substrate characteristics of the sites, compare the conventional and remotely sensed river-bed topographies, and investigate the laser waveforms reflected from submerged targets to provide an evaluation as to the suitability and accuracy of the EAARL system and associated processing algorithms for riverine mapping applications.

Journal of the American Water Resources Associatio↗
USGS2008

Correlation of the Deccan and Rajahmundry Trap lavas: Are these the longest and largest lava flows on Earth?

We propose that the Rajahmundry Trap lavas, found near the east coast of peninsular India , are remnants of the longest lava flows yet recognized on Earth (∼ 1000 km long). These outlying Deccan-like lavas are shown to belong to the main Deccan Traps. Several previous studies have already suggested this correlation, but have not demonstrated it categorically. The exposed Rajahmundry lavas are interpreted to be the distal parts of two very-large-volume pāhoehoe flow fields, one each from the Ambenali and Mahabaleshwar Formations of the Wai Sub-group in the Deccan Basalt Group. Eruptive conditions required to emplace such long flows are met by plausible values for cooling and eruption rates, and this is shown by applying a model for the formation of inflated pāhoehoe sheet flow lobes. The model predicts flow lobe thicknesses similar to those observed in the Rajahmundry lavas. For the last 400 km of flow, the lava flows were confined to the pre-existing Krishna valley drainage system that existed in the basement beyond the edge of the gradually expanding Deccan lava field, allowing the flows to extend across the subcontinent to the eastern margin where they were emplaced into a littoral and/or shallow marine environment. These lavas and other individual flow fields in the Wai Sub-group may exceed eruptive volumes of 5000 km 3 , which would place them amongst the largest magnitude effusive eruptive units yet known. We suggest that the length of flood basalt lava flows on Earth is restricted mainly by the size of land masses and topography. In the case of the Rajahmundry lavas, the flows reached estuaries and the sea, where their advance was perhaps effectively terminated by cooling and/or disruption. However, it is only during large igneous province basaltic volcanism that such huge volumes of lava are erupted in single events, and when the magma supply rate is sufficiently high and maintained to allow the formation of very long lava flows. The Rajahmundry lava fields were emplaced around 65 Ma during the later times of Deccan volcanism, probably just after the K/T environmental crisis. However, many lava-forming eruptions of similar magnitude and style straddled the K/T boundary.

Rajahmundry Trap↗
USGS2026

Computational electromagnetic geophysics for groundwater system studies: A review on established practices and recent advances

Identifying effective solutions for locating groundwater resources and ensuring the quality of drinking water is increasingly urgent, given the challenges posed by climate change and population growth. This review investigates electromagnetic geophysical imaging techniques, in both time- and frequency-domain, that can provide valuable insights for groundwater assessment. We explore computational electromagnetic methods used to evaluate electromagnetic data and several recent hydrogeophysical case studies. As open-source frameworks for modeling electromagnetic geophysical problems become available, a broader range of researchers can interpret their data with computationally advanced software. We provide an overview of documented open-source codes for evaluating electromagnetic data and analyze various hydrological targets in relation to their electromagnetic surveying technique and the computational method applied. Furthermore, we evaluate the potential of advanced computational techniques, including three-dimensional modeling, non-deterministic inversion and machine learning, to couple geophysical with numerical groundwater modeling and apply it in groundwater system studies. Despite obstacles such as complexity and resource demands, our findings indicate that the quantification and integration of predictive uncertainties from both electromagnetic and hydrological data and simulations would significantly improve the reliability of hydrogeophysical models. This can lead to a deeper understanding of groundwater systems and improved management practices.

Journal of Hydrology↗
USGS2010

Lessons from (triggered) tremor

I test a “clock-advance” model that implies triggered tremor is ambient tremor that occurs at a sped-up rate as a result of loading from passing seismic waves. This proposed model predicts that triggering probability is proportional to the product of the ambient tremor rate and a function describing the efficacy of the triggering wave to initiate a tremor event. Using data mostly from Cascadia, I have compared qualitatively a suite of teleseismic waves that did and did not trigger tremor with ambient tremor rates. Many of the observations are consistent with the model if the efficacy of the triggering wave depends on wave amplitude. One triggered tremor observation clearly violates the clock-advance model. The model prediction that larger triggering waves result in larger triggered tremor signals also appears inconsistent with the measurements. I conclude that the tremor source process is a more complex system than that described by the clock-advance model predictions tested. Results of this and previous studies also demonstrate that (1) conditions suitable for tremor generation exist in many tectonic environments, but, within each, only occur at particular spots whose locations change with time; (2) any fluid flow must be restricted to less than a meter; (3) the degree to which delayed failure and secondary triggering occurs is likely insignificant; and 4) both shear and dilatational deformations may trigger tremor. Triggered and ambient tremor rates correlate more strongly with stress than stressing rate, suggesting tremor sources result from time-dependent weakening processes rather than simple Coulomb failure.

Cascadia↗
USGS2013

A computer model to forecast wetland vegetation changes resulting from restoration and protection in coastal Louisiana

The coastal wetlands of Louisiana are a unique ecosystem that supports a diversity of wildlife as well as a diverse community of commercial interests of both local and national importance. The state of Louisiana has established a 5-year cycle of scientific investigation to provide up-to-date information to guide future legislation and regulation aimed at preserving this critical ecosystem. Here we report on a model that projects changes in plant community distribution and composition in response to environmental conditions. This model is linked to a suite of other models and requires input from those that simulate the hydrology and morphology of coastal Louisiana. Collectively, these models are used to assess how alternative management plans may affect the wetland ecosystem through explicit spatial modeling of the physical and biological processes affected by proposed modifications to the ecosystem. We have also taken the opportunity to advance the state-of-the-art in wetland plant community modeling by using a model that is more species-based in its description of plant communities instead of one based on aggregated community types such as brackish marsh and saline marsh. The resulting model provides an increased level of ecological detail about how wetland communities are expected to respond. In addition, the output from this model provides critical inputs for estimating the effects of management on higher trophic level species though a more complete description of the shifts in habitat.

Louisiana↗
USGS2018

Population viability analyses for three Macrhybopsis spp. of the Lower Missouri River

Recent declines in three species of chubs that inhabit the lower Missouri River (shoal chub M. hyostoma , sicklefin chub M. meeki and sturgeon chub M. gelida ) have become a concern in the management of their own populations and the endangered pallid sturgeon ( Scaphirhynchus albus ) that feeds on them. These chub populations encounter threats from fish predation and habitat loss. With the recent advancements in the understanding of the reproductive life history of these species, their declines have prompted development of population models and population viability analyses. For each species, we developed an age‐structured population matrix model with hierarchical stochasticity, which partitions parameter total variance into sampling and temporal components. Using these models, we found population growth rate of all three chub species decreased when stochasticity was added to the model. While examining sensitivity, we found individual fish growth, as measured by length‐at‐age, to impact population growth rate and depending on the species, could be up to four times more influential than overall survival, the next most sensitive parameter. Current survival rates have large temporal variance; more research into accuracy and factors that influence survival rates is needed.

Journal of Applied Ichthyology↗
USGS2017

Plateaus and sinuous ridges as the fingerprints of lava flow inflation in the Eastern Tharsis Plains of Mars

The Tharsis Montes rift aprons are composed of outpourings of lava from chaotic terrains to the northeast and southwest flank of each volcano. Sinuous and branching channel networks that are present on the rift aprons suggest the possibility of fluvial processes in their development, or erosion by rapidly emplaced lavas, but the style of lava flow emplacement throughout rift apron development is not clearly understood. To better characterize the style of lava emplacement and role of fluvial processes in rift apron development, we conducted morphological mapping of the Pavonis Mons southwest rift apron and the eastern Tharsis plains using images from the High Resolution Imaging Science Experiment (HiRISE), Mars Orbiter Camera (MOC), Context Camera (CTX), Thermal Emission Imaging System (THEMIS), and High Resolution Stereo Camera (HRSC) along with the Mars Orbiter Laser Altimeter (MOLA) Precision Experiment Data Records (PEDRs) and gridded data. Our approach was to: (1) search for depositional fans at the slope break between the rift apron and adjacent low slope plains; (2) determine if there is evidence that previously formed deposits might have been buried by plains units; (3) characterize the Tharsis plains morphologies east of Pavonis Mons; and (4) assess their relationship to the rift apron units. We have not identified topographically significant depositional fans, nor did we observe evidence to suggest that plains units have buried older rift apron units. Flow features associated with the rift apron are observed to continue across the slope break onto the plains. In this area, the plains are composed of a variety of small fissures and low shield vents around which broad channel-fed and tube-fed flows have been identified. We also find broad, flat-topped plateaus and sinuous ridges mixed among the channels, tubes and vents. Flat-topped plateaus and sinuous ridges are morphologies that are analogous to those observed on the coastal plain of Hawai‘i, where lava flows have advanced from the volcano's several degree flank onto the nearly zero degree coastal plain. When local volumetric flow rates are low, flow fronts tend to spread laterally and often thicken via endogenous growth, or inflation, of the sheet-like flow units. If flow advance is restricted by existing topography into narrow pathways, inflation can be focused into sinuous, elongate ridges. The presence of plateaus and ridges—emplaced from the rift zones, across the plains to the east of Pavonis Mons—and a lack of fan-like features, or evidence for their burial, are consistent with rift apron lavas crossing a slope break with low local volumetric flow rates that led to inflation of sheet-like and tube-fed lava flows.

Journal of Volcanology and Geothermal Research↗
USGS1976

Flameless atomic absorption determination of bismuth in soils and rocks

Recent advances in flameless atomic absorption allow determinations of bismuth in concentrations as small as 50 ppb in 0.2 g of rock or soil sample. The sample is fused with sodium bisulfate and the fusion product is leached with hot 2 M hydrochloric acid and treated with ammonium citrate, (ethylenedinitrilo) tetraacetic acid disodium salt, and finally with ammonium 1-pyrrolidinedithiocarbamate to form a complex which is extracted into methyl isobutyl ketone. Aliquots of the latter are pipetted into a graphite furnace and then subjected to an established and automated program of drying, charring, and atomizing. Recorded peak heights provide a measure of the amount of bismuth present.

Journal of Research of the U.S. Geological Survey↗
USGS2022

Diatoms.org: Supporting taxonomists, connecting communities

Consistent identification of diatoms is a prerequisite for studying their ecology, biogeography, and successful application as environmental indicators. However, taxonomic consistency among observers has been difficult to achieve because taxonomic information is scattered across numerous literature sources, presenting challenges to the diatomist. Firstly, literature is often inaccessible because of cost or its location in journals that are not widely circulated. Secondly, taxonomic revisions of diatoms are taking place faster than floras can be updated. Finally, taxonomic information is often contradictory across literature sources. These issues can be addressed by developing a content creation community dedicated to making taxonomic, ecological, and image-based data freely available for diatom researchers. Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology. The content curation community aggregates existing taxonomic information, creates new content, and provides feedback in the form of corrections and notices of literature with nomenclatural changes. The website not only addresses the needs of experienced diatom scientists for consistent identification but is also designed to meet users at their level of expertise, including engaging the lay public in the importance of diatom science. The website now contains over 1000 species pages contributed by over 100 content contributors, from students to established scientists. The project began with the intent to provide accurate information on diatom identification, ecology, and distribution using an approach that incorporates engaging design, user feedback, and advanced data access technology. In retrospect, the project that began as an ‘extended electronic book’ has emerged not only as a means to support taxonomists, but for practitioners to communicate and collaborate, expanding the size of and benefits to the content curation community. In this paper, we outline the development of diatoms.org , document key elements of the project, examine ongoing challenges and consider the unexpected emergent properties, including the value of diatoms.org as a source of data. Ultimately, if the field of diatom taxonomy, ecology, and biodiversity is to be relevant, a new generation of taxonomists needs to be trained and employed using new tools. We propose that diatoms.org is in a key position to serve as a hub of training and continuity for the study of diatom biodiversity and aquatic conditions.

Diatom Research↗
USGS1973

Formation of joints in bedrock by moving glacial ice

The orientation of joints in igneous and sedimentary rocks was measured at 21 localities in California, Maine, and New York to investigate the hypothesis that glaciation may open joints in bedrock. A summary of strikes of all joint sets shows the following pattern relative to the direction of glacial advance: two sets, thought to be extension joints, flank the direction of advance and are separated from it by about 10°; two sets, thought to be shear joints, flank the direction of advance by about 40°; and two sets, thought to be release joints, are about 70° to 80° from the direction of advance, or nearly perpendicular to the extension joints. An average of five joint sets, including three or four in this pattern, was found at each locality. The joints are believed to have been opened, in response to stress applied by the moving ice, along preexisting zones of weakness (potential regional joints) in the rock. Some new joints may have formed where no such zone was present near the position required for fracture under the applied stress. Additional investigation of the hypothesis is desirable because of its possible bearing on glacial erosion by quarrying, on interpretation of joint patterns in glaciated regions, and on the nature of aquifers in glaciated bedrock.

California, Maine, New York↗
USGS2009

Littoral transport rates in the Santa Barbara Littoral Cell: a process-based model analysis

Identification of the sediment transport patterns and pathways is essential for sustainable coastal zone management of the heavily modified coastline of Santa Barbara and Ventura County (California, USA). A process-based model application, based on Delft3D Online Morphology, is used to investigate the littoral transport potential along the Santa Barbara Littoral Cell (between Point Conception and Mugu Canyon). An advanced optimalization procedure is applied to enable annual sediment transport computations by reducing the ocean wave climate in 10 wave height - direction classes. Modeled littoral transport rates compare well with observed dredging volumes, and erosion or sedimentation hotspots coincide with the modeled divergence and convergence of the transport gradients. Sediment transport rates are strongly dependent on the alongshore variation in wave height due to wave sheltering, diffraction and focusing by the Northern Channel Islands, and the local orientation of the geologically-controlled coastline. Local transport gradients exceed the net eastward littoral transport, and are considered a primary driver for hot-spot erosion.

California↗
USGS2023

Assessing contaminants of emerging concern in the Great Lakes Ecosystem: A decade of method development and practical application

Assessing the ecological risk of contaminants in the field typically involves consideration of a complex mixture of compounds which may or may not be detected via instrumental analyses. Further, there are insufficient data to predict the potential biological effects of many detected compounds, leading to their being characterized as contaminants of emerging concern (CECs). Over the past several years, advances in chemistry, toxicology, and bioinformatics have resulted in a variety of concepts and tools that can enhance the pragmatic assessment of the ecological risk of CECs. The present Focus article describes a 10+- year multiagency effort supported through the U.S. Great Lakes Restoration Initiative to assess the occurrence and implications of CECs in the North American Great Lakes. State-of-the-science methods and models were used to evaluate more than 700 sites in about approximately 200 tributaries across lakes Ontario, Erie, Huron, Michigan, and Superior, sometimes on multiple occasions. Studies featured measurement of up to 500 different target analytes in different environmental matrices, coupled with evaluation of biological effects in resident species, animals from in situ and laboratory exposures, and in vitro systems. Experimental taxa included birds, fish, and a variety of invertebrates, and measured endpoints ranged from molecular to apical responses. Data were integrated and evaluated using a diversity of curated knowledgebases and models with the goal of producing actionable insights for risk assessors and managers charged with evaluating and mitigating the effects of CECs in the Great Lakes. This overview is based on research and data captured in approximately about 90 peer-reviewed journal articles and reports, including approximately about 30 appearing in a virtual issue comprised of highlighted papers published in Environmental Toxicology and Chemistry or Integrated Environmental Assessment and Management . Environ Toxicol Chem 2023;42:2506–2518. © 2023 SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Environmental Toxicology and Chemistry↗
USGS2012

Characterizing mercury concentrations and fluxes in a Coastal Plain watershed: Insights from dynamic modeling and data

Mercury (Hg) is one of the leading water quality concerns in surface waters of the United States. Although watershed-scale Hg cycling research has increased in the past two decades, advances in modeling watershed Hg processes in diverse physiographic regions, spatial scales, and land cover types are needed. The goal of this study was to assess Hg cycling in a Coastal Plain system using concentrations and fluxes estimated by multiple watershed-scale models with distinct mathematical frameworks reflecting different system dynamics. We simulated total mercury (Hg T , the sum of filtered and particulate forms) concentrations and fluxes from a Coastal Plain watershed (McTier Creek) using three watershed Hg models and an empirical load model. Model output was compared with observed in-stream Hg T . We found that shallow subsurface flow is a potentially important transport mechanism of particulate Hg T during periods when connectivity between the uplands and surface waters is maximized. Other processes (e.g., stream bank erosion, sediment re-suspension) may increase particulate Hg T in the water column. Simulations and data suggest that variable source area (VSA) flow and lack of rainfall interactions with surface soil horizons result in increased dissolved Hg T concentrations unrelated to DOC mobilization following precipitation events. Although flushing of DOC-Hg T complexes from surface soils can also occur during this period, DOC-complexed Hg T becomes more important during base flow conditions. TOPLOAD simulations highlight saturated subsurface flow as a primary driver of daily Hg T loadings, but shallow subsurface flow is important for Hg T loads during high-flow events. Results suggest limited seasonal trends in Hg T dynamics.

South Carolina↗