Geology ReportsSearch

USGS · 70228800

Diatoms.org: Supporting taxonomists, connecting communities

Abstract

Consistent identification of diatoms is a prerequisite for studying their ecology, biogeography, and successful application as environmental indicators. However, taxonomic consistency among observers has been difficult to achieve because taxonomic information is scattered across numerous literature sources, presenting challenges to the diatomist. Firstly, literature is often inaccessible because of cost or its location in journals that are not widely circulated. Secondly, taxonomic revisions of diatoms are taking place faster than floras can be updated. Finally, taxonomic information is often contradictory across literature sources. These issues can be addressed by developing a content creation community dedicated to making taxonomic, ecological, and image-based data freely available for diatom researchers. Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology. The content curation community aggregates existing taxonomic information, creates new content, and provides feedback in the form of corrections and notices of literature with nomenclatural changes. The website not only addresses the needs of experienced diatom scientists for consistent identification but is also designed to meet users at their level of expertise, including engaging the lay public in the importance of diatom science. The website now contains over 1000 species pages contributed by over 100 content contributors, from students to established scientists. The project began with the intent to provide accurate information on diatom identification, ecology, and distribution using an approach that incorporates engaging design, user feedback, and advanced data access technology. In retrospect, the project that began as an ‘extended electronic book’ has emerged not only as a means to support taxonomists, but for practitioners to communicate and collaborate, expanding the size of and benefits to the content curation community. In this paper, we outline the development of diatoms.org , document key elements of the project, examine ongoing challenges and consider the unexpected emergent properties, including the value of diatoms.org as a source of data. Ultimately, if the field of diatom taxonomy, ecology, and biodiversity is to be relevant, a new generation of taxonomists needs to be trained and employed using new tools. We propose that diatoms.org is in a key position to serve as a hub of training and continuity for the study of diatom biodiversity and aquatic conditions.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Sarah A. Spaulding, Marina Potapova, Ian W. Bishop, Sylvia S. Lee, Tim Gasperak, Elena Jovanoska, Paula C. Furey, Mark B. Edlund. 2022-01-11. Diatoms.org: Supporting taxonomists, connecting communities. https://doi.org/10.1080/0269249x.2021.2006790

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

Fossilized diatoms of siliceous hydrothermal deposits in Yellowstone National Park, USA

The study of eukaryotic extremophiles is relatively novel, and, therefore, documentation of the structure and function of micro-organisms in continental hydrothermal systems globally is limited. In this study, we investigate fossil diatoms in siliceous hydrothermal deposits of the Upper Geyser and Yellowstone Lake hydrothermal basins in Yellowstone National Park, and utilize preserved diatom assemblages to infer local environmental conditions. Siliceous sinter from both the Upper Geyser Basin and Yellowstone Lake contains evidence of in-situ diatom growth within these environments. At Upper Geyser Basin, the assemblage consisted of species that could grow on moist siliceous sinter and was dominated by Rhopalodia gibberula . Diatom valves were found in various preservation states, ranging from nearly pristine to highly diagenetically altered. Diatoms collected from siliceous spires in Yellowstone Lake consisted largely of tychoplanktonic and benthic species that were almost certainly growing on the outside of the structure, with an assemblage indicative of relatively shallow, alkaline waters. What remains unclear without access to material for high-resolution dating is whether diatoms colonized the spires during hydrothermal activity or after activity ceased. Our results indicate that diatom frustules can, to some extent, survive alteration in low-temperature (<76°C) hydrothermal environments.

Wyoming

Relationships between diatoms and tidal environments in Oregon and Washington, USA

A new regional dataset comprising 425 intertidal diatom taxa from 175 samples from 11 ecologically diverse Oregon and Washington estuaries illustrates the importance of compiling a large modern dataset from a range of sites. Cluster analyses and detrended correspondence analysis of the diatom assemblages identify distinct vertical zones within supratidal, intertidal and subtidal environments at six of the 11 study sites, but the abundance of some of the most common species varies widely among and within sites. Canonical correspondence analysis of the regional dataset shows relationships between diatom species and tidal exposure, salinity and substratum (grain size and organic content). Correspondence analyses of local datasets show higher values of explained variation than the analysis of the combined regional dataset. Our results emphasize that studies of the autecology of diatom species require many samples from a range of modern environments to adequately characterize species&ndash;environment relationships.

Oregon, Washington

Morphology, ecology and biogeography of Stauroneis pachycephala P.T. Cleve (Bacillariophyta) and its transfer to the genus Envekadea

Stauroneis pachycephala was described in 1881 from the Baakens River, Port Elizabeth, South Africa. Recently, it was found during surveys of the MacKenzie River (Victoria, Australia), the Florida Everglades (USA) and coastal marshes of Louisiana (USA). The morphology, ecology and geographic distribution of this species are described in this article. This naviculoid species is characterised by lanceolate valves with a gibbous centre, a sigmoid raphe, an axial area narrowing toward the valve ends, and capitate valve apices. The central area is a distinct stauros that is slightly widened near the valve margin. The raphe is straight and filiform, and the terminal raphe fissures are strongly deflected in opposite directions. Striae are fine and radiate in the middle of the valve, becoming parallel and eventually convergent toward the valve ends. The external surface of the valves and copulae is smooth and lacks ornamentation. We also examined the type material of S. pachycephala . Our observations show this species has morphological characteristics that fit within the genus Envekadea. Therefore, the transfer of S. pachycephala to Envekadea is proposed and a lectotype is designated.

Florida;Louisiana;Victoria