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At least 1,135 records · Page 63Linked to original sources

USGS2013

Review of revised Klamath River Total Maximum Daily Load models from Link River Dam to Keno Dam, Oregon

Flow and water-quality models are being used to support the development of Total Maximum Daily Load (TMDL) plans for the Klamath River downstream of Upper Klamath Lake (UKL) in south-central Oregon. For riverine reaches, the RMA-2 and RMA-11 models were used, whereas the CE-QUAL-W2 model was used to simulate pooled reaches. The U.S. Geological Survey (USGS) was asked to review the most upstream of these models, from Link River Dam at the outlet of UKL downstream through the first pooled reach of the Klamath River from Lake Ewauna to Keno Dam. Previous versions of these models were reviewed in 2009 by USGS. Since that time, important revisions were made to correct several problems and address other issues. This review documents an assessment of the revised models, with emphasis on the model revisions and any remaining issues. The primary focus of this review is the 19.7-mile Lake Ewauna to Keno Dam reach of the Klamath River that was simulated with the CE-QUAL-W2 model. Water spends far more time in the Lake Ewauna to Keno Dam reach than in the 1-mile Link River reach that connects UKL to the Klamath River, and most of the critical reactions affecting water quality upstream of Keno Dam occur in that pooled reach. This model review includes assessments of years 2000 and 2002 current conditions scenarios, which were used to calibrate the model, as well as a natural conditions scenario that was used as the reference condition for the TMDL and was based on the 2000 flow conditions. The natural conditions scenario included the removal of Keno Dam, restoration of the Keno reef (a shallow spot that was removed when the dam was built), removal of all point-source inputs, and derivation of upstream boundary water-quality inputs from a previously developed UKL TMDL model. This review examined the details of the models, including model algorithms, parameter values, and boundary conditions; the review did not assess the draft Klamath River TMDL or the TMDL allocations. Attention to the details of a model is one of the best ways to identify potential problems, correct them if possible, and begin to assess the magnitude of potential model errors and uncertainty. Model users need to determine the level of acceptable uncertainty associated with their objectives, identify all sources of potential uncertainty (model uncertainty, data uncertainty, etc.), and assess their approach and results accordingly. In the draft Klamath River TMDL, the Oregon Department of Environmental Quality identified the upstream boundary conditions as the largest source of uncertainty for both the current and natural conditions scenarios, not the model algorithms or choice of model parameters. We agree that the upstream boundary conditions are one of the largest, if not the largest, source of model uncertainty; therefore, the derivation of upstream boundary conditions may be more important to the TMDL than some other model-related issues identified in this review. The revised models contain a number of changes, some of which were done to solve small problems and are largely inconsequential to model results, but others of which are important and affect model predictions of instream concentrations. A consistent version of the model is now applied to all scenarios, and an error in the source code was corrected that had inadvertently discarded 20 percent of the incoming solar radiation in the original model. The baseline light-extinction coefficient for water was decreased and set to a consistent and defensible value across all models of reservoir reaches. Inconsistencies among the values of certain parameters in the original models, such as the ammonia nitrification rate and the decomposition rates of organic matter, have been eliminated, although the reasoning behind the final selections was not documented. The dependence of the rate of sediment oxygen demand (SOD) on temperature was modified such that the SOD rate was substantially decreased at temperatures less than 20°C, causing the model to predict higher dissolved oxygen (DO) concentrations in spring, autumn, and winter. Although that change to the temperature dependence function was done to make the function more similar to the model’s default, this change was not accompanied by any documentation of recalibration or sensitivity exercises. The maximum SOD rate for the 2002 current conditions scenario was decreased from 3.0 grams per square meter per day (g/m 2 /d) in the original model to 2.0 g/m 2 /d in the revised model, a considerable adjustment that appears to have been needed to offset effects of a change to another variable (O2LIM) that would have resulted in a substantial increase in the effective SOD rate for 2002. A 50-percent decrease in the SOD rate over a 2-year period, however, is not likely to be mirrored by field measurements, so this change may be compensating for some process that is not represented correctly in the DO budget for the current conditions scenarios. Several important changes were made to the natural conditions scenario. First, the elevation of the Keno reef was corrected; the elevation specified in the original model was 1 foot too high, which affected the volume of the pooled reach and the travel time through it. The most important changes to this scenario were to the upstream boundary inputs of organic matter and algae, which affect incoming fluxes of nitrogen and phosphorus. Algal biomass inputs were increased by approximately 60 percent during summer because of a change in the way those inputs were derived from results of the UKL TMDL model. Non-algal organic matter inputs were decreased, particularly in summer to correct a problem attributed to double-counting of phosphorus in the original inputs. The distribution of non-algal organic matter was changed from 20 percent dissolved in the original model to 90 percent dissolved in the revised model in response to review comments and published data. The overall sum of algal biomass and non-living organic matter was decreased, which resulted in lower inputs of total phosphorus and nitrogen. Total phosphorus inputs were less than 0.03 mg/L, and although the inputs were derived from selected results of the UKL TMDL model, these concentrations seem too low to be representative of a historically eutrophic system surrounded by extensive wetlands, peat soils, and a groundwater system high in phosphorus. The draft TMDL states that the upstream boundary conditions are the greatest source of uncertainty, greater than any uncertainty associated with the models. Efforts to improve existing models of algal growth and nutrient cycling in UKL, therefore, would provide a substantial benefit to downstream modeling efforts on the Klamath River. Although many improvements were made in revising the Klamath River TMDL models, some issues and uncertainties remain. Several errors in the model source code remain, but do not affect model results for this application as long as certain options and rates are not changed; future users of these models should be aware of these issues. Although the distribution of dissolved and particulate organic matter was modified for the natural conditions scenario, that distribution was not changed for the current conditions scenarios. Recent data on that distribution and the likely rates of organic matter decomposition could be used to improve these models in the future. Nitrate predictions at Keno (Highway 66) still are too high for the current conditions scenarios; future efforts should re-evaluate the model’s denitrification rates and the release rate of ammonia from anoxic sediments. Possibly the most important of the remaining issues are tied to the two-state (healthy/unhealthy) hypothesis for the algae population that was coded into the model. Some of the rates and conversion functions could be refined to make them more acceptable; currently, the published literature does not support the concept of moderately low dissolved-oxygen concentrations as a stressor of algae in the ranges used by the model. More research is needed before these algorithms can be truly tested. The algorithms currently appear to help the model fit the patterns in the available data, and that is useful and perhaps sufficient for some purposes, but those algorithms are not truly predictive or reliable for certain purposes until they can be tested through well-designed experiments and research. In summary, the TMDL models used to simulate Link and Klamath Rivers from Link River Dam to Keno Dam were revised to fix several problems and address various issues. The resulting models are an improvement over those that were reviewed by USGS in 2009, and represent a useful advance in the simulation of a complex system that is difficult to model. However, several issues remain that cause increased uncertainty in the model results. Depending on the objectives of the modeling, now or in the future, these remaining issues could be more or less important. For the Klamath River TMDL, the upstream boundary conditions may be a larger source of uncertainty than the concerns with model algorithms and model parameters identified in this review. Efforts to re-evaluate the available models of algal growth and nutrient cycling in UKL would be highly beneficial to downstream modeling efforts in the Klamath River.

Oregon;California↗

USGS2015

Diel cycling of trace elements in streams draining mineralized areas: a review

Many trace elements exhibit persistent diel, or 24-h, concentration cycles in streams draining mineralized areas. These cycles can be caused by various physical and biogeochemical mechanisms including streamflow variation, photosynthesis and respiration, as well as reactions involving photochemistry, adsorption and desorption, mineral precipitation and dissolution, and plant assimilation. Iron is the primary trace element that exhibits diel cycling in acidic streams. In contrast, many cationic and anionic trace elements exhibit diel cycling in near-neutral and alkaline streams. Maximum reported changes in concentration for these diel cycles have been as much as a factor of 10 (988% change in Zn concentration over a 24-h period). Thus, monitoring and scientific studies must account for diel trace-element cycling to ensure that water-quality data collected in streams appropriately represent the conditions intended to be studied.

Applied Geochemistry↗

USGS2016

The Chief Joseph Hatchery Program 2013 Annual Report

The Chief Joseph Hatchery is the fourth hatchery obligated under the Grand Coulee Dam/Dry Falls project, originating in the 1940s. Leavenworth, Entiat, and Winthrop National Fish Hatcheries were built and operated as mitigation for salmon blockage at Grand Coulee Dam, but the fourth hatchery was not built, and the obligation was nearly forgotten. After the Colville Tribes successfully collaborated with the United States to resurrect the project, planning of the hatchery began in 2001 and construction was completed in 2013. The monitoring program began in 2012 and adult Chinook Salmon were brought on station for the first time in June 2013. BPA is the primary funding source for CJH, and the Mid-Columbia PUDs (Douglas, Grant and Chelan County) have entered into cost-share agreements with the tribes and BPA in order to meet some of their mitigation obligations. The CJH production level was set at 60% in 2013 in order to train staff and test hatchery facility systems during the first year of operation. Leavenworth National Fish Hatchery (LNFH) provided 422 Spring Chinook broodstock in June, 2013; representing the official beginning of CJH operations. In July and August the CCT used a purse seine vessel to collect 814 summer/fall Chinook as broodstock that were a continuation and expansion of the previous Similkameen Pond program. In-hatchery survival for most life stages exceeded survival targets and, as of April 2014, the program was on track to exceed the 60% production target for its start-up year. The CJH monitoring project collected field data to determine Chinook population status, trend, and hatchery effectiveness centered on five major activities; 1) rotary screw traps (juvenile outmigration, natural-origin smolt PIT tagging) 2) beach seine (naturalorigin smolt PIT tagging) 3) lower Okanogan adult fish pilot weir (adult escapement, proportion of hatchery-origin spawners [pHOS], broodstock) 4) spawning ground surveys (redd and carcass surveys)(viable salmonid population [VSP] parameters) 5) eDNA collection (VSP parameter—distribution/spatial structure). Adult summer/fall Chinook spawning escapement in 2013 was estimated to be 8,193, with more than 6,227 natural-origin spawners, which exceeded the recent five year and long term averages. The values for pHOS (0.24) and proportion of natural influence (PNI) (0.79) in 2013 exceeded the objectives (0.67), but the five year averages fell short of the goals (0.39 and 0.62, respectively). An Annual Program Review (APR) was held in March, 2014 to share hatchery production and monitoring data, review the salmon forecast for the upcoming year, and develop action plans for the hatchery, selective harvest, and monitoring projects. Based on a strong pre-season forecast of 67,500 Upper Columbia summer/fall Chinook, the plan for 2014 is to operate the hatchery at full program levels of 2 million summer/fall Chinook and 900,000 spring Chinook. To maximize PNI, broodstock for the integrated program should Chief Joseph Hatchery Program 2013 Annual Report 3 be 100% natural-origin broodstock (NOB) and CCT should plan to harvest their full allocation with the selective harvest program removing as many adult hatchery Chinook as possible with the purse seine, the weir, and at the hatchery ladder.

Report↗

USGS1998

Assessing map accuracy in a remotely sensed, ecoregion-scale cover map

Landscape- and ecoregion-based conservation efforts increasingly use a spatial component to organize data for analysis and interpretation. A challenge particular to remotely sensed cover maps generated from these efforts is how best to assess the accuracy of the cover maps, especially when they can exceed 1000 s/km2 in size. Here we develop and describe a methodological approach for assessing the accuracy of large-area cover maps, using as a test case the 21.9 million ha cover map developed for Utah Gap Analysis. As part of our design process, we first reviewed the effect of intracluster correlation and a simple cost function on the relative efficiency of cluster sample designs to simple random designs. Our design ultimately combined clustered and subsampled field data stratified by ecological modeling unit and accessibility (hereafter a mixed design). We next outline estimation formulas for simple map accuracy measures under our mixed design and report results for eight major cover types and the three ecoregions mapped as part of the Utah Gap Analysis. Overall accuracy of the map was 83.2% (SE=1.4). Within ecoregions, accuracy ranged from 78.9% to 85.0%. Accuracy by cover type varied, ranging from a low of 50.4% for barren to a high of 90.6% for man modified. In addition, we examined gains in efficiency of our mixed design compared with a simple random sample approach. In regard to precision, our mixed design was more precise than a simple random design, given fixed sample costs. We close with a discussion of the logistical constraints facing attempts to assess the accuracy of large-area, remotely sensed cover maps.

Remote Sensing of Environment↗

USGS2022

Bear diets and human-bear conflicts: Insights from isotopic ecology

Bears, Ursidae, are considered omnivores, except for giant pandas Ailuropoda melanoleuca and polar bears Ursus maritimus. However, omnivory includes a wide range of dietary variation and trophic positions, making bear dietary ecology unclear. We inferred bear trophic positions from δ 15 N (‰) values and examined their correlation with diets reported in the literature, including frequency of human–bear conflicts (livestock predation and crop damage incidents). Overall, 15N signatures were consistent with diet estimates. Bear species with higher 15 N signatures differed more from each other, including cases of large regional intraspecific variance, than bear species with lower 15 N signatures. Bear trophic position and frequency of reports of human–bear conflicts were uncorrelated, suggesting that livestock predation by bears is an opportunistic behaviour rather than a response to food availability dynamics.

Mammal Review↗

USGS2022

Field-trip guide to continental arc to rift volcanism of the southern Rocky Mountains—Southern Rocky Mountain, Taos Plateau, and Jemez Mountains volcanic fields of southern Colorado and northern New Mexico

The southern Rocky Mountains of northern New Mexico and southern Colorado preserve the Oligocene to Pleistocene record of North American continental arc to rift volcanism. The 35–23 million year old (Ma) southern Rocky Mountain volcanic field (SRMVF), spectacularly preserved in the San Juan Mountains of southern Colorado, records the evolution of large andesitic stratovolcanoes to complex caldera clusters, from which at least 22 major ignimbrite sheets (each 150–5,000 cubic kilometers) were erupted. Outflow deposits of the SRMVF preserved along the broadly uplifted northwest flank of the northern Rio Grande rift basin (the San Luis Valley) provide critical structural and temporal constraints on the inception of crustal extension. Coincident with waning stages of SRMVF caldera-forming volcanism (~25.4 Ma), extensional tectonism was accompanied by a transition from bimodal early Miocene to intermediate-composition late Miocene and dominantly basaltic Pliocene rift volcanism of the Taos Plateau in the southern San Luis Basin. Concomitant rift volcanism in the Española Basin and bordering Jemez Mountains of northern New Mexico records a similar Miocene eruptive history dominated by intermediate-composition volcanism that transitioned locally to Pliocene rift-related basaltic volcanism of the Cerros del Rio volcanic field and culminated in eruptions of the iconic rhyolitic Pleistocene Bandelier Tuff and formation of the Valles Caldera along the northwestern rift-basin margin. This 6-day, 7-night field trip will focus, in broadly equal proportions, on rift-related extensional volcanism of the Jemez Mountains and Taos Plateau regions during the first half of the trip, and on caldera-forming volcanism of the southern Rocky Mountain volcanic field during the second half of the trip. The 35-million-year volcanic history of the region highlighted by new geologic mapping, high-resolution geochronology, petrologic, geochemical, and geophysical data facilitates discussion of (1) the magmatic response to the tectonic transition from subducted-slab arc to continental-rift volcanism; (2) the nature and temporal evolution of rift magmas; (3) fault controls on the spatial evolution of rift magmatism; (4) the diversity of continental-arc ignimbrite volcanism and associated lavas; (5) ignimbrite caldera structure and associated intrusions in three-dimension; (6) the role of recycled crystal mush and magmatic cumulates during growth of Cordilleran batholiths; and (7) high-precision geochronologic contributions to interpretation of relations between regional tectonic and volcanic processes. Most stops will be along roads, but there will be moderate hikes on trails of less than 1-hour duration covering 1–2 kilometers (0.6–1.2 miles) with modest elevation gain of <150 meters (<492 feet). The route will progress in reverse stratigraphic order, starting in the Jemez Mountains of New Mexico and proceed northward to San Luis Basin and San Luis Hills before turning west to the southeast and central San Juan Mountains. Our last full day takes us to the little-visited and only recently mapped, Bonanza caldera of the northeastern San Juan Mountains and on the final day, we leave the San Luis Valley to briefly explore the Tertiary subvolcanic plutons of the Collegiate Range along the west side of the Arkansas Valley rift valley, en route to Denver. The authors of all daily contributions acknowledge the helpful reviews by Amy Gilmer and Joe Colgan and thank Christine Chan and Jeremy Havens for assistance with figures, tables, and guidebook text.

Colorado, New Mexico↗

USGS2026

Background, methods, goals, challenges, opportunities, and information needs

Understanding how climate change and variability will impact grassland ecosystems is crucial for successful grasslands management in the future. In 2020, the North Central Climate Adaptation Science Center began a project to establish a baseline of information to best serve grassland managers (that is, those individuals who develop grassland management plans, implement those plans on the ground, or both) at Federal, State, and Tribal agencies; nongovernmental organizations; and partnerships to help meet regional grassland management goals. This chapter presents the main findings from the review and synthesis of 183 grassland management-related documents relevant to the North Central region. Specifically, this chapter describes the methods by which grassland management-related documents were identified, reviewed, and synthesized; defines five North Central Grassland Ecoregions; provides a synthesis of regional grassland management goals and challenges; identifies information needs relevant to grassland management in a changing climate; and summarizes grassland management issues by ecoregion.

Colorado, Kansas, Montana, Nebraska, North Dakota,↗

USGS1992

Salmonid whirling disease

This paper provides the latest scientific and technical advances in the management of salmonid whirling disease caused by the myxosporean Myxobolus cerebralis (Syn. Myxosoma cerebralis). The complete life cycle of the parasite and the biology of the infective agent to fish, the actinosporean Triactinomyxon stage, are reviewed, and suggested procedures for detection, identification, and control of the disease are discussed. The paper offers sources of information and related reference materials of interest to fish culturists, fishery biologists, and students.

Fish and Wildlife Leaflet↗

USGS2017

Natural resource inventory and monitoring for Ulaan Taiga Specially Protected Areas—An assessment of needs and opportunities in northern Mongolia

Between 1997 and 2011, Mongolia established three specially protected areas in the north-central part of the country to protect various high-value resources. These areas are jointly referred to as the Ulaan Taiga Specially Protected Areas. In accordance with the goals of the draft general management plan, this report identifies options for initiating an inventory and monitoring program for the three protected areas. Together, the three areas comprise over 1.5 million hectares of mountainous terrain west of Lake Hovsgol and bordering the Darkhad Valley. The area supports numerous rare ungulates, endangered fish, and over 40 species of threatened plants. Illegal mining, illegal logging, and poaching pose the most immediate threats to resources. As a first step, a review of published literature would inform natural resource management at the Ulaan Taiga Specially Protected Areas because it would inform other inventories. Vegetation classification and mapping also would inform other inventory efforts because the process incorporates geographic analysis to identify environmental gradients, fine-scale sampling that captures species composition and structure, and landscape-scale results that represent the variety and extent of habitats for various organisms. Mapping using satellite imagery reduces the cost per hectare. Following a determination of existing knowledge, field surveys of vertebrates and vascular plants would serve to build species lists and fill in gaps in existing knowledge. For abiotic resources, a focus on monitoring air quality, evaluating and monitoring water quality, and assembling and storing weather data would provide information for correlating resource response status with changing environmental conditions. Finally, we identify datasets that, if incorporated into a geographic information system, would inform resource management. They include political boundaries, infrastructure, topography, surficial geology, hydrology, fire history, and soils. In terms of tracking high-value resources, vegetation monitoring at the plot scale would provide a basis for detecting change in such characteristics as plant species composition, vegetation structure, and productivity that are associated with landscape-scale factors such as climate change or biotic interactions. Continued population monitoring of rare ungulates, particularly argali or wild sheep ( Ovis ammon ), would provide information on how populations are responding to natural and anthropogenic stressors. Siberian taimen ( Hucho taimen ) also is an important monitoring target given ongoing threats of poaching and climate change.

Ulaan Taiga Specially Protected Areas↗

USGS2011

A previously unreported locality record for the Gila monster ( Heloderma suspectum )

Although the Gila Monster (Heloderma suspectum) is widely distributed throughout the Sonoran and portions of the Mojave Deserts of the southwestern United States and northwestern Mexico, details of its distribution in California are imperfectly known, due to the apparent rarity of the species in that state. In their review of Gila Monster records for California, Lovich and Beaman (2007) documented only 26 credible sightings during a period of 153 years. In May 2009 another sighting in California was documented by Ruppert (2010a, b) who photographed a specimen in the Providence Mountains, an area known for previous Gila Monster sightings (Lovich and Beaman 2007). In this paper we report the 28th credible record of a Gila Monster in California.

California↗

USGS1996

Summary of biological investigations relating to water quality in the Western Lake Michigan Drainages, Wisconsin and Michigan

This report summarizes aquatic biological studies relevant to water-quality assessment that have been done in the Western Lake Michigan Drainages from 1891 to 1996. The objective of the summary was to compile sources of biological data for the U.S. Geological Survey's National Water-Quality Assessment Program. The studies are divided into four categories: (1) populations and community structure of aquatic biota, (2) health of aquatic biota, (3) chemical concentrations in tissues of aquatic biota, and (4) toxicity tests by use of aquatic biota. Studies are further categorized by subbasin, spatial scale (regional or local), types of biota, and, if applicable, effect or contaminant investigated. For the purposes of this report, the study area is divided into five subbasins. The subbasins, from north to south, are (1) the Ford/Escanaba Subbasin in Michigan's Upper Peninsula, and in Wisconsin, (2) the Menominee/ Oconto/Peshtigo Subbasin, (3) the Fox/Wolf Subbasin, (4) the Sheboygan/Manitowoc/Twin Subbasin, and (5) the Milwaukee Subbasin. Most biological studies related to waterquality conditions in the Western Lake Michigan Drainages have focused on populations and community structure of aquatic biota. Chemical concentrations in tissues of aquatic biota have been the next most common area of research. Our review suggests a paucity of data related to the health of all types of aquatic biota, especially amphibians, invertebrates, and reptiles; toxicity studies also were relatively uncommon. Overall, organisms primarily studied have been fish and invertebrates, although birds are most frequently examined in studies of organism health. The Fox/ Wolf Subbasin has been the focus of many more studies than the other subbasins, most likely because of the greater extent and severity of known water-quality problems in the Lower Fox River/Green Bay area over the past several decades and because it is the largest subbasin. Studies in the other subbasins are needed to adequately assess the water quality of these areas.

Michigan, Wisconsin↗

USGS2022

Global dataset of species-specific inland recreational fisheries harvest for consumption

Inland recreational fisheries, found in lakes, rivers, and other landlocked waters, are important to livelihoods, nutrition, leisure, and other societal ecosystem services worldwide. Although recreationally-caught fish are frequently harvested and consumed by fishers, their contribution to food and nutrition has not been adequately quantified due to lack of data, poor monitoring, and under-reporting, especially in developing countries. Beyond limited global harvest estimates, few have explored species-specific harvest patterns, although this variability has implications for fisheries management and food security. Given the continued growth of the recreational fishery sector, understanding inland recreational fish harvest and consumption rates represents a critical knowledge gap. Based on a comprehensive literature search and expert knowledge review, we quantified multiple aspects of global inland recreational fisheries for 81 countries spanning ~192 species. For each country, we assembled recreational fishing participation rate and estimated species-specific harvest and consumption rate. This dataset provides a foundation for future assessments, including understanding nutritional and economic contributions of inland recreational fisheries.

Scientific Data↗

USGS2010

Introduction: Tagging, telemetry, and marking compendium project

Goal and Objectives of the Compendium The goal of this compendium is to integrate profiles of on-going, individual, disparate efforts implementing the science of tagging, telemetry, and marking (TTM) into a compilation of experience to inform the development of fish population monitoring. This is accomplished by meeting the following objectives: • Provide the region with information and peer reviewed analyses to facilitate optimization of the use of TTM technology and designs in a comparable and consistent manner. • Provide findings that are organized, peer reviewed, and communicated widely. • Increase the opportunity for data collection to provide more reliable information and result in improved analyses and higher confidence in data analyses for making informed and more relevant decisions.

PNAMP Report Series↗

USGS2019

Managed aquifer recharge in snow-fed river basins: What, why and how?

What does climate change mean for snow-fed river basins? Climate change poses unique challenges in snow-fed river basins across the western United States because the majority of water supply originates as snow (Dettinger, Udall, & Georgakakos, 2015). In the Sierra Nevada, recent observations include changes in snow accumulation and snowmelt, and shifts in peak streamflow timing (Barnhart et al., 2016; Hatchett et al., 2017; Kim & Jain, 2010; McCabe, Wolock, & Valentin, 2018; Mote, Li, Lettenmaier, Xiao, & Engel, 2018). Such changes upstream alter surface water deliveries downstream, as well as groundwater recharge utilized as both primary and supplemental water supply (Godsey et al., 2014; Harpold, 2016; Jasechko et al., 2014). basin where snowmelt runoff produces substantial water supply to meet diverse agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the Carson Valley, a rich agricultural region (40,000 acres) that grows primarily alfalfa hay. The majority of irrigators rely on surface water delivered through a network of earthen ditches constructed in the mid-19th and early 20th centuries. Flow through these earthen networks and the practice of flood irrigation contribute significantly to groundwater recharge. Because no upstream surface water reservoirs exist, snowpack that accumulates through winter and melts slowly through spring has acted as a “natural” reservoir, providing ample supply through the summer irrigati agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the season. Some irrigators have permitted access to supplemental groundwater that is useful during periods of drought for augmenting shortfalls in surface water delivery. Groundwater is the primary source of municipal and industrial water supply for surrounding communities (e.g., Carson City, Minden, Gardnerville, Dayton). Across the basin, water use is highly regulated through federal, tribal, state and local water-sharing agreements based on prior appropriation doctrine (Wilds, 2014). Carson River surface water allocations follow the Alpine Decree, initiated by the United States Department of Interior in 1925 and signed into law in 1980, following 55 years of litigation, to adjudicate surface water rights to individual parties (NDWP, 1999). The Alpine Decree acknowledges return flows to lower river segments, and thus each river segment is distributed autonomously. This means that the most junior water right on an upper segment can be fulfilled before considering the most senior water right on a lower segment. Ultimately, the ruling is at the discretion of the Federal Water Master to satisfy the needs of each water right Downstream of Carson Valley, surface water flows are stored in Lahontan Reservoir, the nation’s first desert reclamation project (est. 1906), where releases are managed to meet the Newland’s Project irrigation water demand and for environmental use on the Stillwater National Wildlife Refuge. Flows from the Carson River are supplemented through diversions from the Truckee River via the Truckee Canal, resulting in a trans-basin water supply system. How is the Water for the Seasons research program informing snow-fed river basin communities? In the Truckee-Carson River System, researchers and local water managers are working together to assess climate change impacts to water supply and explore how model simulations can produce useful information to support local climate adaptation. Twelve key water managers represent agricultural, environmental, urban and regulatory water-use communities, and bring to the table diverse input and perspectives on how to adapt to climate change. Hydrologists use this input to craft scenarios and simulations that meet the information needs of local water managers. Biannual workshops provide an opportunity for information exchange, where researchers and key water managers generate new knowledge of river system function. That is, researchers share results of models that examine the physical potential, and managers validate the on-the-ground potential, further informing the research process. Coincident to this research program, the region faced a prolonged drought period (2012-2016) with historically low snowpack, followed by a historic wet year (2017) that brought winter and spring flooding as a result of atmospheric river storm events (Sterle et al., 2019). For the Carson River, an important observation made by managers was that peak streamflow that had traditionally coincided with peak irrigation demands, had shifted to earlier in the spring, with summer baseflow also decreasing (Sterle & Singletary, 2017). Managers shared with researchers concerns over potential future impacts that changing snowpack will have on surface water deliveries and reliance on groundwater, as the region’s population and economy continue to grow. During workshops that occurred over this period, local water managers and researchers discussed ways to evaluate water distribution and use that honors the existing legal framework and accounts for changing snowpack regimes (amount, rain versus snow, timing). In response to managers growing interest, researchers introduced the concept of managed aquifer recharge as one potential strategy to adapt and enhance regional water sustainability. What is managed aquifer recharge? Simply stated, managed aquifer recharge is the intentional recharge of structures to spread water over agricultural lands, allowing water to naturally infiltrate into the groundwater system (Bouwer, 1999; Niswonger et al., 2017). The latter may occur during the irrigation season by applying excess water, or during the nonirrigation season when evapotranspiration losses are low. Figure 2 illustrates managed aquifer recharge in a snow-fed river basin, where streamflow generated from snowmelt runoff is diverted to agricultural lands to recharge the aquifer. Such flood irrigation practices, including water delivery through earthen ditch networks, provide incidental but significant aquifer recharge through seepage and deep drainage beneath fields (Niswonger, Allander, & Jeton, 2014). The effects of managed aquifer recharge can vary depending on the location and intensity of practice. For example, implementing managed aquifer recharge water into the groundwater system (Dillon, 2009). This differs from the incidental recharge that may occur as part of normal irrigation practices. Managed recharge may occur by injection into the aquifer through existingwells, or by using existing conveyance adjacent to/along the river’s floodplain has the potential to enhance late-season instream flows due to increased return flows, resulting in greater downstream deliveries as well as improving ecological conditions (Niswonger et al., 2017). Implementing managed aquifer recharge away from the river’s floodplain has the potential to enhance groundwater supply which is increasingly relied upon during surface water shortage (Green et al., 2011), by storing water in available aquifer space in the deep aquifer. At the basin scale, managed aquifer recharge may lead to regional groundwater sustainability. Is the Carson River Basin a candidate for managed aquifer recharge? The physical limitations to implementing managed aquifer recharge in the Carson River Basin hinges on three key factors. The first factor relates to the physical connectivity between rivers and streams, and the irrigation delivery network of canals and ditches that divert water to agricultural lands (Niswonger et al., 2017). In the Carson River Basin the mechanisms for getting water to fields is already in place. Thus, intentionally routing high flows that occur in wet years through this system during the nonirrigation season would mimic what occurs naturally during the irrigation season. The second factor relates to the occurrence of atmospheric river storm events that deliver large amounts of precipitation to the region, much greater than average (Dettinger et al., 2015). With increased frequency and intensity projected under a warmer climate, such events have the potential to produce excess water over short periods of time that could be stored through mechanisms such as managed aquifer recharge (Niswonger et al., 2017). The third factor relates to the change in snowpack accumulation and shifts in snowmelt timing observed elsewhere in the Sierra Nevada (e.g., Godsey et al., 2014; Mote et al., 2018). Having a mechanism in place to maximize use of earlier snowmelt and shifts in streamflow timing could be advantageous and enhance regional groundwater sustainability. As part of the Water for the Seasons study, a hypothetical scenario was developed to determine the feasibility of managed aquifer recharge in the Carson River Basin, assuming no legal constraints. During “wet” or above-average water years, irrigators in the Upper Carson Valley would divert high flows and spread water over agricultural lands during the nonirrigation season. Assuming flows are abundant and “early,” diversions would begin prior to the growing season, when water would otherwise flow downstream to the Lahontan Reservoir. During “dry” years or drought periods, when surface water availability is less, irrigators in the Upper Carson Valley could augment surface water shortages with groundwater, allowing available surface water flows to flow downstream. Researchers hypothesize the amount of water has the potential to boost baseflow to support environmental instream flows, for example. What concerns have local water managers expressed? The hypothetical managed aquifer recharge scenario was presented to water managers in a workshop setting. Presentations included an overview of the hydrologic and operations modeling tools used to evaluate managed aquifer recharge by simulating the timing and distribution of water in the upper watershed. Specifically, in the Upper Carson Valley, a hydrologic model (GSFLOW) simulates streamflow driven by snowmelt, and surface and groundwater interactions, while a river basin operations model (MODSIM) allocates water according to the prior appropriation doctrine in the basin (see Figure 1) (Morway, Niswonger, & Triana, 2016; Niswonger et al., 2017). Integrating these two modeling tools advances the evaluation of climate impacts on water availability in agricultural communities and the resulting impacts of alternative management strategies (Morway et al., 2016). When asked about the viability of managed aquifer recharge, the perspectives of 11 managers varied (Figure 3). Regardless of rating, all managers questioned, “How would thisreally work?” Several managers questioned whether models could simulate the connectivity between surface and groundwater to accurately quantify changes to instream flow. Others raised concerns that managed aquifer recharge violates the Alpine Decree and Nevada Water Law. Still others requested researchers consider alternatives that could work within the confines of current (2019) water law. Managers posed specific questions that should be considered when evaluating the potential for managed aquifer recharge. For example: What triggers implementation of managed aquifer recharge?How “high” or “low” must annual flows be to initiate managed aquifer recharge? When in the water year is this determined? Where exactly in the Carson Valley is managed aquiferre charge possible? For example, what areas away from the floodplain could ensure long-term storage? Can model simulations quantify potential benefits and consequences system-wide?Would this information support decision-making, such as permitting of additional supplemental groundwater rights? How are researchers going to address managers’ research questions? Managers’ perspectives help to validate the on-the-ground potential of particular strategies and further refine alternative management scenarios. For example, understanding that managers are concerned with oversaturated fields helps researchers to define conditions in the model, such as what defines a wet versus “too” wet type of year and where to focus irrigation for managed aquifer recharge. Incorporating these nuances provides more accurate quantification of the potential benefits and consequences for users across the basin. Modeling is underway to simulate managed aquifer recharge scenarios and explore basin-wide implications. Researchers and local water managers will convene to collaboratively review results and further assess whether this or other strategies could work under the confines of existing water law. Subsequent fact sheets will present these findings.

Nevada↗

USGS1989

Assessment of smolt condition for travel time analysis. Annual report 1988

Estimates of migration rates and travel times of juvenile salmonids within index reaches of the Columbia River basin are collected through the Smolt Monitoring Program for use by the Fish Passage Center. With increased reliance upon travel time estimates in 1988 by the Fish Passage Center, this study was implemented to monitor the biological attributes of juvenile chinook salmon Oncorhynchus tshawytscha and steelhead trout 0.- mykiss used for the travel time estimates, The physiological ability of fish to respond to stress was assessed by measuring levels of plasma cortisol, glucose, and chloride before and after a stress-challenge test. Most mid-Columbia and Snake river groups responded normally to the stress challenge exhibiting an increase in plasma glucose and cortisol and a slight decrease in chloride. Fish trucked to release sites were more stressed than those released directly from the hatchery, but most still responded to the stress challenge test normally. An abnormal or extreme stress response occurred when there were deviations from preferred protocol, disease problems at hatcheries, or when fish were trucked over long periods (7h). The development of smoltification was evaluated by measuring gill Na+K+-ATPase, plasma thyroxine, purines, and body morphology. Most groups were similar at the hatcheries but differed as the migration to McNary Dam proceeded. Gill ATPase activity increased 2-3 fold during the first 20 days of migration, after which it changed little. Fish with longer in-river travel times appeared to be more smolted than those which were in the river for a shorter period of time. The prevalence of bacterial kidney disease (BKD) in spring chinook salmon was evaluated using the enzyme linked immunosorbent assay (ELISA) and fluorescent antibody technique (FAT). Prevalence of BKD in groups tested using the ELISA method was as high as 99% at some downstream locations. A review of indices is presented as a guide, to the development of an index of smolt condition and preliminary data are presented. An index could be used as a tool to synthesize information on fish condition to assist with management and evaluation of the Water Budget.

Report↗

USGS2018

Simulation of potential groundwater recharge for the glacial aquifer system east of the Rocky Mountains, 1980–2011, using the Soil-Water-Balance Model

An understanding of the spatial and temporal extent of groundwater recharge is critical for many types of hydrologic assessments involving water quality, contaminant transport, ecosystem health, and sustainable use of groundwater. Annual potential groundwater recharge was simulated at a 1-kilometer resolution with the Soil-Water-Balance (SWB) model for the glacial aquifer system east of the Rocky Mountains, from central Montana east to Maine, for calendar years 1980–2011. The SWB model used high resolution meteorological, land cover, and soil hydrology datasets that are nationally consistent and publicly available. The SWB model computed daily potential groundwater recharge as precipitation in excess of interception, runoff, evapotranspiration, and soil-water storage capacity. Daily potential recharge values within each year of the simulation were summed to produce annual potential recharge rates. Potential recharge as described in this report is water that infiltrates vertically below the plant rooting zone and is assumed to reach the water table. The calibrated SWB model in this report is called the glacial SWB model. Model calibration assumed that the area contributing to groundwater discharge equaled the surface watershed. The model was calibrated to stream base flows from 39 watersheds throughout the model domain that had hydrologic conditions appropriate for hydrograph separation. Base flows were calculated from daily streamflow records with the HYSEP local minimum hydrograph separation method The glacial SWB model reproduced the mean annual base-flow calibration targets well; the Nash-Sutcliffe efficiency coefficient was 0.94, and the root mean squared error was 1.28 inches per year. The glacial SWB model provides insight into the spatial and temporal variability in potential annual recharge across the glacial aquifer system. About 20 percent of the active model area had an average potential recharge rate of less than 1 inch per year. Total precipitation, total recharge, and recharge as a percentage of precipitation increased from west to east. A substantial amount of the recharge water (39 percent) entering the glacial aquifer system travels through developed (urbanized) and agricultural landscapes, which are known to cause water-quality impairments. Regional climatic events, such as the 1988 to 1989 drought, are apparent in the potential recharge time series. Potential recharge generally increased across the glacial aquifer system between 2001 and 2011. A comparison of the potential recharge from the glacial SWB model to previous broad-scale recharge estimates reveals several important considerations for future SWB modeling applications. Shifts in the overall distribution of potential recharge between separate models can be explained by methods used to generate base-flow calibration target datasets. Spatial patterns in potential recharge simulated by SWB models are strongly dependent on the data and assumptions used to assign model cells to hydrologic soil groups. A review of several SWB models used to estimate groundwater recharge (and not surface runoff) revealed that model results are most sensitive to input climatic data, followed by surface runoff (curve number) and root-zone depth parameters.

Scientific Investigations Report↗

USGS1986

Review of the intensive culture of walleye fry

Efficient intensive culture of larval walleyes (Stizostedion vitreum) may soon be realized due to results of research on larval development, culture environment, preferred food organisms, and feeding techniques. Larval behavior and morphology (developmental state) can be used as indicators for appropriate handling and feeding techniques. Certain environmental conditions such as a rearing unit color that contrasts with food organisms, water temperatures of 18‐22°C, uniform lighting, and a stocking density of no more than 35,000 fish/m 3 reportedly contribute to increased growth and survival. Successful culture requires that suitable food such as cladocerans, copepods, and brine shrimp be continuously available at a high density (0.1 organism/mL). Cannibalism among walleye larvae has not been prevented but has been reduced through the use of suitable fish and food densities.

Progressive Fish-Culturist↗

USGS2019

The future of barriers and trapping methods in the sea lamprey (Petromyzon marinus) control program in the Laurentian Great Lakes

A major duty of the Great Lakes Fishery Commission (GLFC), created in 1955, was the development a program of eradication or management of sea lamprey populations in the Great Lakes for the protection of the Great Lakes fishery. Beginning in the 1980s the GLFC shifted sea lamprey control to an integrated pest management model seeking to deploy control measures which target multiple life stages. Currently control efforts focus on limiting the area of infestation using barriers to migratory adults and eradication of larvae from streams using selective pesticides. Feedback on program effectiveness is obtained by trapping migratory adult lamprey at a series of index sites around the basin. The GLFC continues to support multiple research initiatives to develop additional control, improve current control measures, and further advance the sea lamprey control program. During the past six decades sea lamprey control in the Great Lakes has evolved as the research program has identified technological advances. Here we summarize the current state and recent advancements for two of the sea lamprey control program’s core elements, barriers and traps, highlight challenges to be addressed to continue the advancement of these program elements, and provide a series of research questions to spur interest within the research community. Further, because considerable information about these program elements is scattered among grey literature and technical reports, we summarize the history of barriers and traps in sea lamprey control in the included appendices to provide relevant program background to anyone interested in pursuing these research topics.

Great Lakes↗