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At least 1,063 records · Page 59Linked to original sources
USGS2013

NCWin — A Component Object Model (COM) for processing and visualizing NetCDF data

NetCDF (Network Common Data Form) is a data sharing protocol and library that is commonly used in large-scale atmospheric and environmental data archiving and modeling. The NetCDF tool described here, named NCWin and coded with Borland C + + Builder, was built as a standard executable as well as a COM (component object model) for the Microsoft Windows environment. COM is a powerful technology that enhances the reuse of applications (as components). Environmental model developers from different modeling environments, such as Python, JAVA, VISUAL FORTRAN, VISUAL BASIC, VISUAL C + +, and DELPHI, can reuse NCWin in their models to read, write and visualize NetCDF data. Some Windows applications, such as ArcGIS and Microsoft PowerPoint, can also call NCWin within the application. NCWin has three major components: 1) The data conversion part is designed to convert binary raw data to and from NetCDF data. It can process six data types (unsigned char, signed char, short, int, float, double) and three spatial data formats (BIP, BIL, BSQ); 2) The visualization part is designed for displaying grid map series (playing forward or backward) with simple map legend, and displaying temporal trend curves for data on individual map pixels; and 3) The modeling interface is designed for environmental model development by which a set of integrated NetCDF functions is provided for processing NetCDF data. To demonstrate that the NCWin can easily extend the functions of some current GIS software and the Office applications, examples of calling NCWin within ArcGIS and MS PowerPoint for showing NetCDF map animations are given.

Cartographic Journal↗
USGS2005

An online operational rainfall-monitoring resource for epidemic malaria early warning systems in Africa

Periodic epidemics of malaria are a major public health problem for many sub-Saharan African countries. Populations in epidemic prone areas have a poorly developed immunity to malaria and the disease remains life threatening to all age groups. The impact of epidemics could be minimized by prediction and improved prevention through timely vector control and deployment of appropriate drugs. Malaria Early Warning Systems are advocated as a means of improving the opportunity for preparedness and timely response. Rainfall is one of the major factors triggering epidemics in warm semi-arid and desert-fringe areas. Explosive epidemics often occur in these regions after excessive rains and, where these follow periods of drought and poor food security, can be especially severe. Consequently, rainfall monitoring forms one of the essential elements for the development of integrated Malaria Early Warning Systems for sub-Saharan Africa, as outlined by the World Health Organization. The Roll Back Malaria Technical Resource Network on Prevention and Control of Epidemics recommended that a simple indicator of changes in epidemic risk in regions of marginal transmission, consisting primarily of rainfall anomaly maps, could provide immediate benefit to early warning efforts. In response to these recommendations, the Famine Early Warning Systems Network produced maps that combine information about dekadal rainfall anomalies, and epidemic malaria risk, available via their Africa Data Dissemination Service. These maps were later made available in a format that is directly compatible with HealthMapper, the mapping and surveillance software developed by the WHO's Communicable Disease Surveillance and Response Department. A new monitoring interface has recently been developed at the International Research Institute for Climate Prediction (IRI) that enables the user to gain a more contextual perspective of the current rainfall estimates by comparing them to previous seasons and climatological averages. These resources are available at no cost to the user and are updated on a routine basis.

Malaria Journal↗
USGS2014

BatTool: an R package with GUI for assessing the effect of White-nose syndrome and other take events on Myotis spp. of bats

Background: Myotis species of bats such as the Indiana Bat and Little Brown Bat are facing population declines because of White-nose syndrome (WNS). These species also face threats from anthropogenic activities such as wind energy development. Population models may be used to provide insights into threats facing these species. We developed a population model, BatTool, as an R package to help decision makers and natural resource managers examine factors influencing the dynamics of these species. The R package includes two components: 1) a deterministic and stochastic model that are accessible from the command line and 2) a graphical user interface (GUI). Results: BatTool is an R package allowing natural resource managers and decision makers to understand Myotis spp. population dynamics. Through the use of a GUI, the model allows users to understand how WNS and other take events may affect the population. The results are saved both graphically and as data files. Additionally, R-savvy users may access the population functions through the command line and reuse the code as part of future research. This R package could also be used as part of a population dynamics or wildlife management course. Conclusions: BatTool provides access to a Myotis spp. population model. This tool can help natural resource managers and decision makers with the Endangered Species Act deliberations for these species and with issuing take permits as part of regulatory decision making. The tool is available online as part of this publication.

Source Code for Biology and Medicine↗
USGS2023

BatTool: Projecting bat populations facing multiple stressors using a demographic model

Bats provide ecologically and agriculturally important ecosystem services but are currently experiencing population declines caused by multiple environmental stressors, including mortality from white-nose syndrome and wind energy development. Analyses of the current and future health and viability of these species may support conservation management decision making. Demographic modeling provides a quantitative tool for decision makers and conservation managers to make more informed decisions, but widespread adoption of these tools can be limited because of the complexity of the mathematical, statistical, and computational components involved in implementing these models. In this work, we provide an exposition of the BatTool R package, detailing the primary components of the matrix projection model, a publicly accessible graphical user interface ( https://rconnect.usgs.gov/battool ) facilitating user-defined scenario analyses, and its intended uses and limitations (Wiens et al., US Geol Surv Data Release 2022; Wiens et al., US Geol Surv Softw Release 2022). We present a case study involving wind energy permitting, weighing the effects of potential mortality caused by a hypothetical wind energy facility on the projected abundance of four imperiled bat species in the Midwestern United States.

Methods in Ecology and Evolution↗
USGS2016

Combined exposure of diesel exhaust particles and respirable Soufrière Hills volcanic ash causes a (pro-)inflammatory response in an in vitro multicellular epithelial tissue barrier model

Background There are justifiable health concerns regarding the potential adverse effects associated with human exposure to volcanic ash (VA) particles, especially when considering communities living in urban areas already exposed to heightened air pollution. The aim of this study was, therefore, to gain an imperative, first understanding of the biological impacts of respirable VA when exposed concomitantly with diesel particles. Methods A sophisticated in vitro 3D triple cell co-culture model of the human alveolar epithelial tissue barrier was exposed to either a single or repeated dose of dry respirable VA (deposited dose of 0.26 ± 0.09 or 0.89 ± 0.29 μg/cm 2 , respectively) from Soufrière Hills volcano, Montserrat for a period of 24 h at the air-liquid interface (ALI). Subsequently, co-cultures were exposed to co-exposures of single or repeated VA and diesel exhaust particles (DEP; NIST SRM 2975; 0.02 mg/mL), a model urban pollutant, at the pseudo-ALI. The biological impact of each individual particle type was also analysed under these precise scenarios. The cytotoxic (LDH release), oxidative stress (depletion of intracellular GSH) and (pro-)inflammatory (TNF-α, IL-8 and IL-1β) responses were assessed after the particulate exposures. The impact of VA exposure upon cell morphology, as well as its interaction with the multicellular model, was visualised via confocal laser scanning microscopy (LSM) and scanning electron microscopy (SEM), respectively. Results The combination of respirable VA and DEP, in all scenarios, incited an heightened release of TNF-α and IL-8 as well as significant increases in IL-1β, when applied at sub-lethal doses to the co-culture compared to VA exposure alone. Notably, the augmented (pro-)inflammatory responses observed were not mediated by oxidative stress. LSM supported the quantitative assessment of cytotoxicity, with no changes in cell morphology within the barrier model evident. A direct interaction of the VA with all three cell types of the multicellular system was observed by SEM. Conclusions Combined exposure of respirable Soufrière Hills VA with DEP causes a (pro-)inflammatory effect in an advanced in vitro multicellular model of the epithelial airway barrier. This finding suggests that the combined exposure to volcanic and urban particulate matter should be further investigated in order to deduce the potential human health hazard, especially how it may influence the respiratory function of susceptible individuals (i.e. with pre-existing lung diseases) in the population.

Particle and Fibre Toxicology↗
USGS2018

Time-varying predatory behavior is primary predictor of fine-scale movement of wildland-urban cougars

Background While many species have suffered from the detrimental impacts of increasing human population growth, some species, such as cougars ( Puma concolor ), have been observed using human-modified landscapes. However, human-modified habitat can be a source of both increased risk and increased food availability, particularly for large carnivores. Assessing preferential use of the landscape is important for managing wildlife and can be particularly useful in transitional habitats, such as at the wildland-urban interface. Preferential use is often evaluated using resource selection functions (RSFs), which are focused on quantifying habitat preference using either a temporally static framework or researcher-defined temporal delineations. Many applications of RSFs do not incorporate time-varying landscape availability or temporally-varying behavior, which may mask conflict and avoidance behavior. Methods Contemporary approaches to incorporate landscape availability into the assessment of habitat selection include spatio-temporal point process models, step selection functions, and continuous-time Markov chain (CTMC) models; in contrast with the other methods, the CTMC model allows for explicit inference on animal movement in continuous-time. We used a hierarchical version of the CTMC framework to model speed and directionality of fine-scale movement by a population of cougars inhabiting the Front Range of Colorado, U.S.A., an area exhibiting rapid population growth and increased recreational use, as a function of individual variation and time-varying responses to landscape covariates. Results We found evidence for individual- and daily temporal-variability in cougar response to landscape characteristics. Distance to nearest kill site emerged as the most important driver of movement at a population-level. We also detected seasonal differences in average response to elevation, heat loading, and distance to roads. Motility was also a function of amount of development, with cougars moving faster in developed areas than in undeveloped areas. Conclusions The time-varying framework allowed us to detect temporal variability that would be masked in a generalized linear model, and improved the within-sample predictive ability of the model. The high degree of individual variation suggests that, if agencies want to minimize human-wildlife conflict management options should be varied and flexible. However, due to the effect of recursive behavior on cougar movement, likely related to the location and timing of potential kill-sites, kill-site identification tools may be useful for identifying areas of potential conflict.

Colorado↗
USGS1969

Application of deep electrical soundings for groundwater exploration in Hawaii

Forty-five resistivity soundings, using Schlumberger and equatorial dipole electrode configurations, were made on the islands of Oahu and Hawaii to determine the applicability of direct current resistivity methods for locating freshwater aquifers in the State of Hawaii. The soundings were made on the northwestern part of the island of Oahu near the town of Waialua and on the island of Hawaii on the "saddle" area near Pohakuloa and Humuula. Interpretation of 32 sounding curves obtained on the island of Oahu indicates that it is possible to correlate five stratigraphic units underlain by a vesicular basalt basement and that the determination of the approximate depth to the freshwater-saline-water interface within the basalt is feasible. Two of these Schlumberger soundings with electrode spacings AB/2 reaching 6000 ft yielded sounding curves of the maximum and minimum types whose terminal branches asymptotically approach a resistivity of about 30 ohm, which is believed to be the true resistivity of basalt saturated with sea water. Near the town of Waialua the aquifer is a coral zone as well as parts of the weathered vesicular basalt basement. On the island of Hawaii, near Pohakuloa, an exploratory well drilled in basalt to a depth of 1001 ft (prior to the resistivity survey) proved to be dry. Interpretation of thirteen deep soundings made with Schlumberger and equatorial arrays suggests that the minimum depth to a conductive layer, which may represent basalt saturated with fresh water, is about 2700 ft below land surface. The groundwater appears to be dike impounded.

Hawaii↗
USGS1969

The use of Schlumberger and equatorial soundings in groundwater investigations near El Paso, Texas

Electrical soundings using the symmetric AMNB Schlumberger and the bipole-dipole equatorial arrays were made along two profiles near El Paso, Texas, in support of a groundwater exploration program which included seismic refraction and gravity surveys. Electrode spacings (AB/2 or R) reaching 12,000 ft allowed exploration to depths of about 7000 ft. Geoelectrical information on the subsurface materials was augmented by sounding with the bilateral equatorial configuration and by transforming Schlumberger curves into dipole-polar sounding curves with formulas developed by Al'pin and by Tsekov. The bilateral equatorial sounding curves were found useful for detecting the direction of dip of highly resistive bedrocks whereas transformed sounding curves were used to evaluate the average longitudinal resistivity, and hence the depth, to the "electric basement." A few of the Schlumberger sounding curves were either clearly or subtly distorted by nonhorizontal geologic structures. The interpretation of these sounding curves illustrates the requirement for careful analysis in processing electrical prospecting data obtained over complex geologic conditions. The interpretation of a combined Schlumberger-equatorial sounding curve, which did not agree with the preliminary interpretation of seismic refraction data, was confirmed to be correct by data from a test well drilled to a depth of 4363 ft. The application of electrical sounding data in the El Paso area furnished valuable information on the depth to fresh-water-saltwater interfaces and on the depth to highly resistive impervious bedrocks.

Texas↗
USGS1979

Compressional velocities from multichannel refraction arrivals on Georges Bank: northwest Atlantic Ocean

Velocities were obtained from unreversed, refracted arrivals on analog records from a 48‐channel, 3.6-km hydrophone cable (3.89 km from the airgun array to the last hydrophone array). Approximately 200 records were analyzed along 1500 km of ship track on Georges Bank, northwest Atlantic Ocean, to obtain regional sediment velocity distribution to a depth of 1.4 km below sea level. This technique provides nearly continuous coverage of refraction velocities and vertical velocity gradients. Because of the length of the hydrophone cable and the vertical velocity gradients, the technique is applicable only to the Continental Shelf and the shallower parts of the Continental Slope in water depths less than 300 m. Sediment diagenesis, the influence of overburden pressure on compaction, lithology, density, and porosity are inferred from these data. Velocities of the sediment near the water‐sediment interface range from less than 1500 m/sec on the north edge of Georges Bank to 1830 m/sec for glacial deposits in the northcentral part of the bank. Velocity gradients in the upper 400 m range from 1.0km/sec/km(sec −1 ) on the south edge of the bank to 1.7sec −1 on the north. Minimum gradients of 0.8sec −1 were observed south of Nantucket Island. Velocities and velocity gradients are explained in relation to physical properties of the Cretaceous, Tertiary, and Pleistocene sediments. Isovelocity contours at 100-m/sec intervals are nearly horizontal in the upper 400 m. Isovelocity contours at greater depths show a greater difference from a mean depth because of the greater structural and lithological variation. Bottom densities inferred from the velocities range from 1.7 to 1.9g/cm 3 and porosities range from 48 to 62 percent. The most significant factor controlling velocity distribution on Georges Bank is overburden pressure and resulting compaction. From the velocity data we conclude that Georges Bank has been partially overridden by a continental ice sheet.

Atlantic Ocean, Georges Bank↗
USGS1980

High-sensitivity aeromagnetic survey of the U.S. Atlantic continental margin

The U.S. Geological Survey contracted a high-sensitivity, digital aeromagnetic survey that was flown over the U.S. Atlantic continental margin over a period of 15 months between 1974 and 1976. The 185,000 km of profile data have a relative accuracy approaching a few tenths of a nanotesla, which allowed compilation into maps at a scale of 1:250,000, with a contour interval of 2 nT. Automatic data processing using the Werner method allowed calculations of apparent depth to sources of the magnetic anomalies on all of the profiles, assuming a dike or interface as a source. Comparison of the computed depths to magnetic basement with multichannel seismic profiles across the survey area helped to reduce ambiguities in magnetic depth estimates and enabled interpolation of basement structures between seismic profiles. The resulting map showing depth to basement of the Atlantic continental margin is compatible with available multichannel seismic data, and we consider it a reasonable representation of the base of the sedimentary column.

Geophysics↗
USGS2021

Incorporating uncertainty into groundwater salinity mapping using AEM data

Airborne electromagnetic surveys provide spatially extensive resistivity information that can be useful for groundwater salinity mapping; however, the transformation from geophysical data to salinity interpretations carries uncertainty. We compare two quantitative approaches to salinity mapping recently applied to address water resource management objectives: the location of the depth to the freshwater-brine interface at Paradox Valley, Colorado, and 3D categorical mapping of fresh, brackish, and saline groundwater near oil and gas fields of the San Joaquin Valley, California. These different approaches were driven by a combination of the availability of water quality observations, the hydrogeologic setting, and study objectives.

Conference Paper↗
USGS2005

Palaeohydrology of the Southwest Yukon Territory, Canada, based on multiproxy analyses of lake sediment cores from a depth transect

Lake-level variations at Marcella Lake, a small, hydrologically closed lake in the southwestern Yukon Territory, document changes in effective moisture since the early Holocene. Former water levels, driven by regional palaeohydrology, were reconstructed by multiproxy analyses of sediment cores from four sites spanning shallow to deep water. Marcella Lake today is thermally stratified, being protected from wind by its position in a depression. It is alkaline and undergoes bio-induced calcification. Relative accumulations of calcium carbonate and organic matter at the sediment-water interface depend on the location of the depositional site relative to the thermocline. We relate lake-level fluctuations to down-core stratigraphic variations in composition, geochemistry, sedimentary structures and to the occurrence of unconformities in four cores based on observations of modern limnology and sedimentation processes. Twenty-four AMS radiocarbon dates on macrofossils and pollen provide the lake-level chronology. Prior to 10 000 cal. BP water levels were low, but then they rose to 3 to 4 m below modern levels. Between 7500 and 5000 cal. BP water levels were 5 to 6 m below modern but rose by 4000 cal. BP. Between 4000 and 2000 cal. BP they were higher than modern. During the last 2000 years, water levels were either near or 1 to 2 m below modern levels. Marcella Lake water-level fluctuations correspond with previously documented palaeoenvironmental and palaeoclimatic changes and provide new, independent effective moisture information. The improved geochronology and quantitative water-level estimates are a framework for more detailed studies in the southwest Yukon. ?? 2005 Edward Arnold (Publishers) Ltd.

Holocene↗
USGS2010

New seismic hazard maps for Puerto Rico and the U.S. Virgin Islands

The probabilistic methodology developed by the U.S. Geological Survey is applied to a new seismic hazard assessment for Puerto Rico and the U.S. Virgin Islands. Modeled seismic sources include gridded historical seismicity, subduction-interface and strike-slip faults with known slip rates, and two broad zones of crustal extension with seismicity rates constrained by GPS geodesy. We use attenuation relations from western North American and worldwide data, as well as a Caribbean-specific relation. Results are presented as maps of peak ground acceleration and 0.2- and 1.0-second spectral response acceleration for 2% and 10% probabilities of exceedance in 50 years (return periods of about 2,500 and 500 years, respectively). This paper describes the hazard model and maps that were balloted by the Building Seismic Safety Council and recommended for the 2003 NEHRP Provisions and the 2006 International Building Code. ?? 2010, Earthquake Engineering Research Institute.

Earthquake Spectra↗
USGS2012

MT3DMS: Model use, calibration, and validation

MT3DMS is a three-dimensional multi-species solute transport model for solving advection, dispersion, and chemical reactions of contaminants in saturated groundwater flow systems. MT3DMS interfaces directly with the U.S. Geological Survey finite-difference groundwater flow model MODFLOW for the flow solution and supports the hydrologic and discretization features of MODFLOW. MT3DMS contains multiple transport solution techniques in one code, which can often be important, including in model calibration. Since its first release in 1990 as MT3D for single-species mass transport modeling, MT3DMS has been widely used in research projects and practical field applications. This article provides a brief introduction to MT3DMS and presents recommendations about calibration and validation procedures for field applications of MT3DMS. The examples presented suggest the need to consider alternative processes as models are calibrated and suggest opportunities and difficulties associated with using groundwater age in transport model calibration.

Transactions of the ASABE↗
USGS2003

A multi-level pore-water sampler for permeable sediments

The construction and operation of a multi - level piezometer (multisampler) designed to collect pore water from permeable sediments up to 230 cm below the sediment - water interface is described. Multisamplers are constructed from 1 1/2 inch schedule 80 PVC pipe. One-quarter-inch flexible PVC tubing leads from eight ports at variable depths to a 1 1/2 inch tee fitting at the top of the PVC pipe. Multisamplers are driven into the sediments using standard fence-post drivers. Water is pumped from the PVC tubing with a peristaltic pump. Field tests in Banana River Lagoon, Florida, demonstrate the utility of multisamplers. These tests include collection of multiple samples from the permeable sediments and reveal mixing between shallow pore water and overlying lagoon water .

Journal of Sedimentary Research↗
USGS1993

Fluvial response to late Quaternary climatic fluctuations, central Kobuk Valley, northwestern Alaska

Much of northwestern Alaska remained unglaciated during the Pleistocene and thus offers a favorable setting for examining long-term records of high-latitude geological and biological change. Epiguruk, a large cut bank 3.5 km long and up to 36 m high on the Kobuk River south of the Brooks Range in eastern Beringia, exposes complex sedimentary successions representing cycles of upper Quaternary alluviation and eolian sedimentation, downcutting, and soil formation. A rich record of plants and mammals is also preserved in the section. Deposits of fluvial channels and flood plains, eolian dunes, sand sheets, loess, and ponds, as well as organic soils (Histosols) are represented. Parallel-bedded fine sand and coarse silt couplets that commonly contain root structures, ripple cross-lamination, and silt drapes are flood-plain sediments apparently deposited at the interface of fluvial and eolian environments. Multiple fluvial-to-eolian depositional sequences were caused by influx of eolian sediment to the river from intermittently active dune fields south of the Kobuk River. Alluviation in the Kobuk Valley was coeval with glaciation in the Brooks Range, whereas downcutting occurred during interstadials when dune stabilization limited sediment supply. The depositional model developed at Epiguruk may be useful in interpreting some of the widespread subhorizontally stratified late-glacial deposits of Europe and North America.

Alaska↗
USGS1986

Origin of the Mariano Lake uranium deposit, McKinley County, New Mexico

The Mariano Lake uranium deposit, hosted by the Brushy Basin Member of the Jurassic Morrison Formation, occurs in the Smith Lake district of the Grants uranium region, New Mexico. The orebody, contains abundant amorphous organic material, which suggests that it represents a primary-type deposit; however, the orebody is close to a regional reduction-oxidation interface, which suggests that uranium was secondarily redistributed by oxidative processes. Uranium contents correlate positively with organic carbon contents. Petrographic evidence points to uranium residence in amorphous organic material that was post- depositionally introduced in the diagenetic history of the host sandstone. Uranium mineralization was preceded by precipitation of pyrite (δ 34 S values of — 11.0 to — 38.2 per mil), mixed-layer smectite-illite clays, and quartz and potassium feldspar overgrowths; and also partial dissolution of some detrital feldspars. Alterations associated with uranium mineralization include precipitation of the organic material, microcrys- talline quartz, and pyrite and marcasite (δ 34 S values of -29.4 to -41.6 per mil), and the destruction of detrital Fe-Ti oxide grains. Following mineralization, calcite, dolomite, barite, and kaolinite were precipitated, and some iron disulfides were replaced by ferric oxides. Geochemical data and petrographic observations both indicate that the Mariano Lake orebody is a primary-type deposit. Oxidative processes have not noticeably redistributed uranium in the immediate vicinity of the deposit, nor have they greatly modified geochemical characteristics in the ore. Impedance of ground-water flow by local folds and the lower porosity characteristics of ore zones may have helped to preserve the deposit.

New Mexico↗
USGS1986

Iron-titanium oxide minerals and magnetic susceptibility anomalies in the Mariano Lake-Lake Valley cores-Constraints on conditions of uranium mineralization in the Morrison Formation, San Juan Basin, New Mexico

Petrographic study of the Mariano Lake-Lake Valley cores reveals three distinct zones of postdepositional alteration of detrital Fe-Ti (iron-titanium) oxide minerals in the Westwater Canyon Member of the Upper Jurassic Morrison Formation. In the uranium-bearing and adjacent portions of the Westwater Canyon, these detrital Fe-Ti oxide minerals have been thoroughly altered by leaching of iron. Stratigraphically lower parts of the Westwater Canyon and the underlying Recapture Member are characterized by preservation of Fe-Ti oxide grains, primarily magnetite and ilmenite, and of hematite, and by an absence of uranium concentrations. Partly destroyed Fe-Ti oxide minerals occupy an interval between the zones of destruction and preservation. Alteration patterns of the Fe-Ti oxide minerals are reflected in bore-hole magnetic susceptibility logs. Magnetic susceptibility response in the upper parts of the Westwater Canyon Member is flat and uniformly < 500 /xSI units, but at greater depths it fluctuates sharply, from <1,000 to nearly 8,000 μSI units. The boundary between uniformly low and high magnetic susceptibility response corresponds closely to the interval that divides the zone of completely altered from the zone of preserved detrital Fe-Ti oxide minerals. The alteration pattern suggests that solutions responsible for destruction of the Fe-Ti oxide minerals originated in the overlying Brushy Basin Member of the Morrison Formation. Previous studies indicate that these solutions were rich in soluble organic matter and perhaps in uranium. Uranium precipitation may have been controlled by a vertically fluctuating interface between organic-rich solutions and geochemically different fluids in which the detrital Fe-Ti oxide minerals were preserved.

New Mexico↗