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USGS2025

Surface-wave relocation and characterization of the October 2023 tsunamigenic seismic unrest near Sofugan volcano, Izu Islands, Japan

A moderate-magnitude earthquake swarm occurred in the remote Izu Islands region of Japan between October 1 and 8, 2023. The swarm included 151 shallow earthquakes cataloged by the U.S. Geological Survey, which notably included a roughly 2.5-hr episode of 15 successive magnitude (M) < 5.5 earthquakes. Origin times were coincident with regionally recorded tsunami waves, but tsunamigenesis for moderate-magnitude earthquakes is uncommon, indicating that volcanic activity generated the ocean displacements. Leveraging a surface-wave relative relocation approach, we estimate precise epicentroid locations for the remote swarm. Final epicentroids and caldera analogs indicate a three-stage model to explain swarm activity: (a) caldera pressurization due to magma intrusion, (b) depressurization via dike propagation away from the caldera, and (c) eruption corresponding with caldera reactivation either by collapse or additional intrusion.

Sofugan volcano, Izu Islands↗
USGS2025

Simulated effects of future water availability and protected species habitat in a perennial wetland, Santa Barbara County, California

This study evaluates the potential water availability in Barka Slough and the effects of changing hydrological conditions on the aquatic habitat of five protected species. Barka Slough is a historically perennial wetland at the downstream western end of the San Antonio Creek Valley watershed (SACVW). A previously published hydrologic model of the SACVW for 1948–2018 was extended to include 2019–2021 and then modified to simulate the future years of 2022–2051. Two models simulating the future years of 2022–2051 were constructed, each with different climate inputs: (1) a repeated historical climate and (2) a 2070-centered Drier Extreme Warming climate (2070 DEW). The model with the 2070 DEW climate had warmer temperatures and an increase in average annual precipitation driven by larger, albeit more infrequent, precipitation events than the model with the historical climate. Simulated groundwater pumpage resulted in cumulative groundwater storage depletion and groundwater-level decline in Barka Slough in both future models. The simulations indicate that Barka Slough may transition from a perennial to an ephemeral wetland. Streamflow, stream disconnection, and depth to groundwater are key habitat metrics for federally listed species in Barka Slough. Future seasonal conditions for each metric are more likely to affect federally listed species’ habitats under 2070 DEW climatic conditions. Future seasonal streamflow volume may negatively impact unarmored threespine stickleback ( Gasterosteus aculeatus williamsoni ) and tidewater goby ( Eucyclogobis newberryi) habitats. Future seasonal stream disconnection may negatively impact the unarmored threespine stickleback habitat. Future groundwater-level decline may negatively impact Gambel’s watercress ( Nasturtium gambelii ) and La Graciosa thistle ( Cirsium scariosum var. loncholepis ) habitats and could influence the ability to use Barka Slough as a restoration or reintroduction site for these species. Results from this study can be used to inform water management decisions to sustain future groundwater availability in the SACVW.

California↗
USGS2025

Increased flood exposure in the Pacific Northwest following earthquake-driven subsidence and sea-level rise

Climate-driven sea-level rise is increasing the frequency of coastal flooding worldwide, exacerbated locally by factors like land subsidence from groundwater and resource extraction. However, a process rarely considered in future sea-level rise scenarios is sudden (over minutes) land subsidence associated with great (>M8) earthquakes, which can exceed 1 m. Along the Washington, Oregon, and northern California coasts, the next great Cascadia subduction zone earthquake could cause up to 2 m of sudden coastal subsidence, dramatically raising sea level, expanding floodplains, and increasing the flood risk to local communities. Here, we quantify the potential expansion of the 1% floodplain (i.e., the area with an annual flood risk of 1%) under low (~0.5 m), medium (~1 m), and high (~2 m) earthquake-driven subsidence scenarios at 24 Cascadia estuaries. If a great earthquake occurred today, floodplains could expand by 90 km 2 (low), 160 km 2 (medium), or 300 km 2 (high subsidence), more than doubling the flooding exposure of residents, structures, and roads under the high subsidence scenario. By 2100, when climate-driven sea-level rise will compound the hazard, a great earthquake could expand floodplains by 170 km 2 (low), 240 km 2 (medium), or 370 km 2 (high subsidence), more than tripling the flooding exposure of residents, structures, and roads under the high subsidence scenario compared to the 2023 floodplain. Our findings can support decision-makers and coastal communities along the Cascadia subduction zone as they prepare for compound hazards from the earthquake cycle and climate-driven sea-level rise and provide critical insights for tectonically active coastlines globally.

California, Oregon, Washington↗
USGS2025

Site response and wave propagation effects in the eastern United States

Fourier amplitude spectra from regional earthquakes in the eastern United States are used in a parametric inversion for source, path, and site effects. Five earthquakes are selected for analysis during the installation of the United States National Seismic Network (US), Earthscope’s USArray Transportable Array (TA), and other temporary arrays to maximize station coverage. A global search algorithm is used to solve for site response from 0.1 to 15 Hz, corner frequency, geometrical spreading ( r - γ ), and frequency dependent anelastic attenuation in the form Q(f) = Q o f α . Tradeoff between moment and geometric spreading is handled by fixing the moment. The tradeoff between corner frequency and Q(f) is solved by selecting the value of corner frequency that minimizes an objective function defined over all stations. Values of site response and attenuation parameters show a strong spatial correlation with the physiographic provinces of the eastern United States. Site response for the Atlantic Coastal Plain is consistent with previous work using spectral ratios relative to a reference site, defined by strong resonance peaks correlated with the thickness of sediments. Site response for the other physiographic provinces is markedly different from the coastal plain, with a lack of distinct resonance peaks and a broad moderate high at frequences from 0.1 to 0.5 Hz consistent with the hard-rock geology of the regions. Like site response, Q(f) has a strong correlation with physiographic province, showing lower values on the coastal plain and higher values inland. Geometric spreading exponent, γ, decreases with increasing hypocenter distance from just above 1 at a few tens of kilometers to 0.9 at 500 km. The limited range in geometric spreading values is attributed to starting the Fourier transform window at the S ‐wave arrival for all distances and averaging over multiple wave types.

eastern United States↗
USGS2025

Grand Canyon landslide-dam and paleolake triggered by the Meteor Crater impact at 56 ka

This paper hypothesizes that the Meteor Crater impact in Arizona, USA, 56,000 years ago triggered landslides in Grand Canyon that dammed the Colorado River and formed Nankoweap paleolake. This is compatible with shock and earthquake physics for the impact that infer a M5.4 seismic event, attenuated to an effective magnitude of M3.5 at Grand Canyon. Results that support the hypothesis include radiocarbon dating of driftwood and luminescence dating of associated slack-water lake sediments that are preserved in caves up to 60 m above the modern Colorado River. Radiocarbon ages from two locations, including Stanton’s Cave, date the driftwood as 55.25 ± 2.44 ka (n = 4). Sediments associated with the driftwood gave a luminescence age of 56.00 ± 6.39 ka (n = 2). These six Grand Canyon dates, and three published ages for the Meteor Crater impact, show statistically indistinguishable results that support the hypothesis for a geologically instantaneous series of events with a mean age of 55.60 ± 1.30 ka. This work highlights the value of radiocarbon dating near the limits of the technique, integration of multiple dating methods, and seismic and landslide hazards associated with meteorite impacts in regions of extreme topography like Grand Canyon.

Arizona↗
USGS2024

Layered intrusions in the Precambrian: Observations and perspectives

Layered intrusions are plutonic bodies of cumulates that form by the crystallization of mantle-derived melts. These intrusions are characterized by igneous layering distinguishable by shifts in mineralogy, texture, or composition. Layered intrusions have been fundamental to our understanding of igneous petrology; however, it is their status as important repositories of critical metals – such as platinum-group elements, chromium, and vanadium – that has predominantly driven associated research in recent decades. Many layered intrusions were emplaced during the Precambrian, predominantly at the margins of ancient cratons during intervals of supercontinent accretion and destruction. It appears that large, layered intrusions require rigid crust to ensure their preservation, and their geometry and layering is primarily controlled by the nature of melt emplacement. Layered intrusions are best investigated by integrating observations from various length-scales. At the macroscale, intrusion geometries can be discerned, and their presence understood in the context of the regional geology. At the mesoscale, the layering of an intrusion may be characterized, intrusion-host rock contact relationships studied, and the nature of stratiform mineral occurrences described. At the microscale, the mineralogy and texture of cumulate rocks and any mineralization are elucidated, particularly when novel microtextural and mineral chemical datasets are integrated. For example, here we demonstrate how mesoscale observations and microscale datasets can be combined to understand the petrogenesis of the perplexing snowball oiks outcrop located in the Upper Banded Series of the Stillwater Complex. Our data suggest that the orthopyroxene oikocrysts did not form in their present location, but rather formed in a dynamic magma chamber where crystals were transported either by convective currents or within crystal-rich slurries. Critical metals may be transported to the level of a nascent intrusion as dissolved components in the melt. Alternatively, ore minerals are entrained from elsewhere in a plumbing system, potentially facilitated by volatile-rich phases. There are many ore-forming processes propounded by researchers to occur at the level of emplacement; however, each must address the arrival of the ore mineral, its concentration of metals, and its accumulation into orebodies. In this contribution, several of these processes are described as well as our perspectives on the future of layered intrusion research.

Precambrian Research↗
USGS2025

Implications of physics-based M9 ground motions on liquefaction-induced damage in the Cascadia Subduction Zone: Looking forward and backward

Given the likelihood of future M9 Cascadia Subduction Zone (CSZ) earthquakes, various estimates of the resulting, regional ground motions have been made, including a suite of 30 physics-based simulations that reflect key modeling uncertainties. However, because the last CSZ interface rupture occurred in 1700 CE, the shaking expected in such an event is especially uncertain, as are the impacts to the built and living environments. Like other coseismic impacts, soil liquefaction poses a significant threat and must be considered by any scenario study used to inform planning and response, or to focus mitigation resources. Liquefaction is also notable for its potential to “ground truth” ground-motion estimates, given that its presence or absence in the geologic record can provide constraint on the intensities of shaking in past events. It is thus an important phenomenon looking both forward and backward. Accordingly, using recent physics-based simulations, this study (1) predicts liquefaction in M9 CSZ ruptures at 400 locations in Oregon, Washington, and British Columbia (BC) using an array of cone-penetration-test based models and (2) uses paleoliquefaction evidence at ten sites spanning from Southern Oregon to Vancouver, BC to constrain possible ground-motion intensities experienced in the 1700 CE earthquake. The forward predictions indicate that liquefaction in M9 events could be pervasive in the region and affect numerous population hubs, with the potential for damage across hundreds of square kilometers. The backward analyses suggest that 1700 CE ground-motion intensities may have been less than expected from M9 simulations in some northern portions of the CSZ (e.g. Seattle), given the paucity of 1700 CE liquefaction evidence in these areas. Ultimately, further discovery and analysis of CSZ paleoliquefaction, or lack thereof, will confirm or modify this possibility and the conclusions drawn herein.

Oregon, Washington↗
USGS2025

Estimated hydrogeologic, spatial, and temporal distribution of self-supplied domestic groundwater withdrawals for aquifers of the Virginia Coastal Plain

Water use from private-domestic wells accounts for nearly 40 percent of total groundwater withdrawals in the Virginia Coastal Plain Physiographic Province (henceforth called the Virginia Coastal Plain). However, because self-supplied domestic water use generally falls below the Virginia Department of Environmental Quality (VDEQ) reporting and management threshold of 300,000 gallons per month, quantifying these withdrawals is challenging. This report builds upon the foundation of previous U.S. Geological Survey investigations by providing revised techniques to improve estimates of the aquifer source, spatial distribution, and monthly magnitude of these groundwater withdrawals. The aquifer sources of private-domestic wells in the Virginia Coastal Plain were estimated by cross-referencing 8,264 well records from the VDEQ and the Virginia Department of Health to a digital model of the Virginia Coastal Plain hydrogeologic framework. This analysis highlights the regional importance of the Yorktown-Eastover, Potomac, and surficial aquifers. Collectively, these three aquifers account for 80 percent of self-supplied domestic groundwater withdrawals. The population using self-supplied domestic water was estimated using census blocks, well-use ratios, building footprints, and land-use and land-cover data to produce a high-resolution, disaggregated, raster-based dataset. This approach improves upon previous models at the census-block or road-network scale by reducing the low-density spread of the self-supplied domestic population across undeveloped areas and concentrating the population and its corresponding water use in the areas where it is most likely to occur. Results show that an estimated 475,332 people comprise the 2020 self-supplied domestic population of the Virginia Coastal Plain, an increase of 5.7 percent since 2010, and the greatest concentrations of self-supplied domestic population surround large cities. Estimates could be further refined with the addition of current and complete spatial data on public water-system service areas. The quantity of water used by the self-supplied domestic population was estimated by modifying published state per-capita water-use coefficients with the corresponding monthly variability assessed from Virginia Coastal Plain public water-system withdrawal data. This analysis estimates an average increase of 12 percent from June through August and an average decrease of 8 percent from December through March from the baseline annual average of 80 gallons per day per capita, which generally matches similar studies in the eastern United States. The application of these revised methodologies for the estimation of private-domestic wells and the self-supplied domestic population improves understanding of domestic groundwater use in the Virginia Coastal Plain across hydrogeologic, spatial, and temporal scales. These revisions help better inform water-resource managers and decision makers and support higher resolution groundwater modeling. Furthermore, these methods are transferrable to other areas where self-supplied domestic water withdrawals are important to the overall water budget.

Virginia↗
USGS2024

Metal mobilization from thawing permafrost to aquatic ecosystems is driving rusting of Arctic streams

Climate change in the Arctic is altering watershed hydrologic processes and biogeochemistry. Here, we present an emergent threat to Arctic watersheds based on observations from 75 streams in Alaska’s Brooks Range that recently turned orange, reflecting increased loading of iron and toxic metals. Using remote sensing, we constrain the timing of stream discoloration to the last 10 years, a period of rapid warming and snowfall, suggesting impairment is likely due to permafrost thaw. Thawing permafrost can foster chemical weathering of minerals, microbial reduction of soil iron, and groundwater transport of metals to streams. Compared to clear reference streams, orange streams have lower pH, higher turbidity, and higher sulfate, iron, and trace metal concentrations, supporting sulfide mineral weathering as a primary mobilization process. Stream discoloration was associated with dramatic declines in macroinvertebrate diversity and fish abundance. These findings have considerable implications for drinking water supplies and subsistence fisheries in rural Alaska.

Alaska↗
USGS2023

Hydrogeology, karst, and groundwater availability of Monroe County, West Virginia

Monroe County is in southeastern West Virginia, encompassing an area of 474 square miles. The area consists of karst and siliciclastic aquifers of Ordovician, Silurian, Devonian, and Mississippian age and is in parts of two physiographic provinces: the Valley and Ridge Province to the east of Peters Mountain, and the Appalachian Plateau Province to the west of Peters Mountain. This study was developed in response to inquiries from the Monroe County Commission requesting assessment of the water resources of the county to better understand the quantity of the county’s groundwater resources, for both current [2023] and future demand, and to provide information to support protection and management of the county’s valuable groundwater resources. Various products were developed for this study that provide knowledge with respect to water availability and contamination susceptibility of the karst aquifers within the county. U.S. Geological Survey (USGS) geologists conducted extensive geologic mapping in support of the project, producing (1) a countywide bedrock geologic map, (2) a countywide hydrogeologic map, and (3) a light detection and ranging (lidar)-derived countywide digital elevation model and associated sinkhole map. A significant part of this work was to map in detail the Greenbrier Group at the formation level, which prior to this study had only partially been completed. The report also includes (4) a description of the lithologic units identified as part of the geologic mapping process. U.S. Geological Survey hydrologists completed several additional products for the hydrology part of the effort, including development of (1) a countywide potentiometric surface (water-table) map, (2) a countywide base-flow stream assessment, (3) countywide water-budget estimates, (4) well log surveys for 15 wells to better understand subsurface controls on groundwater flow within the study area, (5) two groundwater tracer tests to better refine the groundwater divide from the northern and southern parts of the karst aquifer in Monroe County; and finally, based on all available data collected for the study including the potentiometric surface map, geologic map, current [2023] and legacy fluorometric groundwater tracer tests, and base-flow stream assessments, (6) groundwater-basin delineations were reassessed for principal groundwater basins within the Greenbrier aquifer. In Monroe County, four principal hydrogeologic settings produce large yields of water for residential, agricultural, and other uses. The most relied upon water-bearing zone with respect to current [2023] public water supply is from springs along Peters Mountain. These springs are derived from intervals of fractured sandstone and resultant alluvial deposits. Groundwater flows downslope through these permeable alluvial deposits and discharges at the contact with less permeable strata, such as the Reedsville Shale. The second most relied upon water-bearing zone in Monroe County is within the karstic Greenbrier Group aquifer, in which the basal Hillsdale Limestone overlies the less permeable Maccrady Shale. This geologic contact between the Hillsdale Limestone and Maccrady Shale is not only targeted as a source of water for agricultural supply but also is targeted as a source of water for residential supply. The third most relied upon water-bearing zone is composed of shallow perched aquifers within the Greenbrier Group. The discontinuous nature of these perched aquifers makes mapping their extent impossible, but they are related to permeable geologic strata, such as karstified limestones with solutionally enhanced permeability that overlies less permeable shale or chert bedrock. During geologic mapping of the county, several of these perched aquifers were documented in the Pickaway, Union, and Alderson Limestones. A fourth zone consists of springs from Ordovician carbonates at the base of Peters Mountain, which are influenced by sinking streams as well as upwelling along faults. In terms of water quantity, the most sustainable springs are those having deeper-sourced flows. Public supplies are a principal source of water used for residential and commercial supply in the region, accounting for 0.49 million gallons per day (Mgal/d) of fresh-water withdrawals (0.14 Mgal/d of groundwater and 0.35 Mgal/d of surface water) for residential and commercial use and serving 6,645 individuals (49.2 percent of the population). An estimated 6,861 people, (50.8 percent of the population) primarily rely on private wells or other unregulated sources, such as springs, and withdraw 0.55 Mgal/d of groundwater for their residential use. Public water supply in the region is primarily (71.4 percent) derived from springs and augmented by stream withdrawals (backup sources mainly during low-flow periods), with the remaining portion (28.6 percent) derived from groundwater withdrawals from wells. For rural residents, however, 100 percent of their withdrawals are derived from groundwater (wells or springs).

West Virginia↗
USGS2026

Evaluation of best management practices at an edge-of-field site in the Eagle Creek watershed, Ohio, 2012–20

In 2010, the U.S. Geological Survey worked in partnership with the Great Lakes Restoration Initiative and the Natural Resources Conservation Service to identify farm fields in priority watersheds—watersheds critically important to Great Lake health. Intensive best management practices were implemented in five States to test the efficacy of best management practices, also referred to as agricultural conservation practices, to reduce sediment and nutrient runoff on agricultural fields. These fields were chosen as representatives of the priority watersheds because their farming practices and geographical conditions were common among farms in those watersheds. A farm site located near Findlay, Ohio, in the Eagle Creek watershed used two conservation practices, cover crop (Natural Resources Conservation Service practice standard 340) and variable rate technology (VRT; Natural Resources Conservation Service practice standard 590), which represent common practices in the Maumee priority watershed. This study monitored surface runoff and subsurface tile runoff at the Eagle Creek watershed site. The effects of cover crop and VRT nutrient application on sediment and nutrient runoff were assessed from October 2012 to September 2020. Cover crops were applied in fall of 2016, 2017, and 2018, coinciding with VRT applications. The following parameters were analyzed as part of the study: runoff discharge; peak discharge; and concentrations and loads of total phosphorus, particulate phosphorus, dissolved reactive phosphorus, and suspended sediment. High peak runoff events disproportionally affected nutrient concentrations and loads in runoff. A threshold of the 85th percentile of the peak discharge was chosen to assess the effect of cover crop and VRT nutrient application on nutrient mitigation at each gage. Runoff events below the 85th percentile were considered small, and runoff events over the 85th percentile were considered large. Concentrations from collected water-quality samples were used for the analysis; estimated concentrations were excluded from the statistical evaluation. All surface runoff parameters during small runoff events, except surface runoff volume, were significantly lower in the period with cover crops and VRT implementation. Contrarily, subsurface runoff parameters during small events were not statistically different between the periods with and without cover crops and VRT implementation. Surface and subsurface parameters during large events were also not statistically different between the periods with and without cover crops and VRT implementation. These results indicate cover crops and VRT may improve water quality during small runoff events, but additional best management practices that mitigate large runoff events may lead to greater water-quality improvement given the contribution of large events to overall losses.

Ohio↗
USGS2025

Airborne radiometric data map alteration of porphyry copper systems in the Elkhorn district, MT

The Elkhorn district in southwestern Montana is known for past production of high-grade base and precious metals from skarn and carbonate replacement deposits. The district also hosts a porphyry Cu-Mo deposit. A radiometric survey flown over the district and surrounds provides maps of surficial concentrations of potassium, thorium, and uranium. Handheld gamma ray spectrometer measurements on altered and unaltered rocks in the district and surrounding region provide a means to ground truth the airborne data. We demonstrate that the airborne and ground-based measurements show similar map patterns. We calculate ratios of the radioelement concentrations and present a potassium enhancement map that combines potassium and ratios of potassium to thorium and uranium. The results highlight the rocks previously mapped as having K-feldspar-biotite and quartz-sericite alteration assemblages in the Elkhorn district and map additional hydrothermal systems in the region, including known alteration in the Radersburg district. The data enhancement techniques can be used as a screening tool for mapping additional porphyry copper systems.

Montana↗
USGS2024

The 2023 U.S. 50-state National Seismic Hazard Model: Changes in 2023 compared to 2018 ground motions

We present the 2023 U.S. National Seismic Hazard Model (NSHM) for all 50 states that applies new smoothed seismicity, fault rupture, and ground motion models. New data and methods are introduced in the 2023 earthquake rupture forecast that include: new earthquake catalogs - excluding induced earthquakes, alternative declustering methods, spatially smoothed seismicity distributions, full-catalog scaled rates to account for aftershocks, updated CEUS-WUS attenuation boundary, new magnitude-scaling equations, new geodetic and geologic deformation models, and alternative fault system solutions accounting for a more complete representation of epistemic uncertainty potential for earthquake generation in Alaska, Hawaii, and the conterminous U.S. Improved ground motion models consider new Next Generation Attenuation NGASubduction, modified NGA-East, and adjustments to account for regional biases in ground shaking observations. Semi-empirical and 3D simulations of ground motion are applied to account for shaking at 21 oscillator periods, 2 peak motions, and 8 site conditions. Site effects models are constructed for western U.S. basins (Seattle, Portland/Tualatin, San Francisco, Central Valley of California, Los Angeles, and Salt Lake City) and for sites with deep sedimentary wedges found across the central and eastern U.S. Gulf Coast and Atlantic coastal plain regions. These models result in substantial changes compared to the older NSHMs and are differentiated for the earthquake rupture forecast and ground motion model changes to display sensitivities and impacts.

Conference Paper↗
USGS1998

Characterization of hydrogeologic units using matrix properties, Yucca Mountain, Nevada

Determination of the suitability of Yucca Mountain, in southern Nevada, as a geologic repository for high-level radioactive waste requires the use of numerical flow and transport models. Input for these models includes parameters that describe hydrologic properties and the initial and boundary conditions for all rock materials within the unsaturated zone, as well as some of the upper rocks in the saturated zone. There are 30 hydrogeologic units in the unsaturated zone, and each unit is defined by limited ranges where a discrete volume of rock contains similar hydrogeologic properties. These hydrogeologic units can be easily located in space by using three-dimensional lithostratigraphic models based on relation- ships of the properties with the lithostratigraphy. Physical properties of bulk density, porosity, and particle density; flow properties of saturated hydraulic conductivity and moisture-retention characteristics; and the state variables (variables describing the current state of field conditions) of saturation and water potential were determined for each unit. Units were defined using (1) a data base developed from 4,892 rock samples collected from the coring of 23 shallow and 8 deep boreholes, (2) described lithostratigraphic boundaries and corresponding relations to porosity, (3) recognition of transition zones with pronounced changes in properties over short vertical distances, (4) characterization of the influence of mineral alteration on hydrologic properties such as permeability and moisture-retention characteristics, and (5) a statistical analysis to evaluate where boundaries should be adjusted to minimize the variance within layers. This study describes the correlation of hydrologic properties to porosity, a property that is well related to the lithostratigraphy and depositional and cooling history of the volcanic deposits and can, therefore, be modeled to be distributed laterally. Parameters of the hydrogeologic units developed in this study and the relation of flow properties to porosity that are described can be used to produce detailed and accurate representations of the core-scale hydrologic processes ongoing at Yucca Mountain.

Nevada↗
USGS2026

Effects of a low-lipid diet on the gut microbiome and head kidney transcriptome of juvenile Chinook Salmon

Objective Pacific salmon Oncorhynchus spp. reared in production hatcheries are typically fed high-lipid, energy-dense diets to achieve large size and high body condition prior to release. In contrast, juveniles in natural environments tend to consume low-lipid, high-protein diets, and fish reared for research or conservation purposes are sometimes fed diets that are formulated to mimic natural diets and promote wild-like phenotypes. Understanding how these alternative diets affect fish health beyond growth and body condition could ultimately contribute to improving hatchery fish fitness. Methods In this work, we evaluated changes in the fecal microbiome and gene expression of juvenile Chinook Salmon O. tshawytscha on a standard high-lipid hatchery diet versus a low-lipid diet formulated to mimic the nutrition profile of natural-origin fish. To evaluate the time scale at which diet alters the fecal microbiome, we collected longitudinal samples over a 12-week period and switched the diets of a subset of fish twice during the experiment. We used 16S ribosomal RNA gene amplicon sequencing to characterize fecal microbiome differences between fish on the two diets as well as hatchery-reared fish at a production hatchery, hatchery fish that had been captured after release into a stream, and natural-origin, stream-reared fish of similar ages. Additionally, we conducted RNA sequencing on head kidney samples from laboratory-reared fish to evaluate changes in gene expression in this important immune organ. Results We found that the low-lipid diet and the hatchery diet resulted in microbiomes that differed from the microbiome of natural-origin fish and from each other and that diet-driven changes to the microbiome could occur in under 14 d. The low-lipid diet did not result in a microbiome that resembled the microbiome of naturally produced fish. Instead, the low-lipid diet resulted in a microbiome community that was distinct from those of fish reared on the hatchery diet and fish sampled from the wild. The RNA sequencing results indicated differential enrichment of pathways related to immunity, metabolism, and hormone synthesis between fish that were fed the two experimental diets. Conclusions The results suggest that additional environmental factors influence the microbiome more strongly than diet formulation or that the low-lipid diet has a smaller effect on the microbiome than a natural, ­invertebrate-based diet. Given that the gut microbiome and systemic immune function contribute significantly to disease resistance, our findings highlight the importance of understanding how diets fed to fish in captivity may affect fish health beyond growth and body condition metrics.

Journal of Aquatic Animal Health↗
USGS2025

Generalized Bancroft algorithm for locating earthquakes with P- and S-wave arrival times

Because of similarities between locating an earthquake with seismic stations and locating a Global Positioning System (GPS) receiver from satellites, the Bancroft algorithm developed for GPS processing can be used to locate earthquakes. Such an approach to earthquake location differs from the conventional method of choosing an initial or trial solution and then iteratively improving the solution until convergence. The Bancroft algorithm has the advantage of being a direct, noniterative solution but with the disadvantage of only being able to accommodate a homogeneous velocity model. An additional limitation of the standard Bancroft algorithm is that it considers arrival times in a medium with a single propagation velocity. This poses no problem for GPS processing because electromagnetic waves travel at the speed of light; however, for seismic waves it means the algorithm can be applied to collections of either P ‐ or S ‐wave arrival times. Here, I show how the Bancroft algorithm can be generalized to handle both P ‐ and S ‐wave arrival‐time measurements simultaneously. I also show how to accommodate depth‐varying P ‐ and S ‐wave velocity models. I apply the generalized Bancroft algorithm to microearthquakes beneath Tanaga Volcano in Alaska and compare standard locations from the widely used HYPOINVERSE location code to Bancroft locations and to the output of HYPOINVERSE when setting the trial location to the Bancroft location. I find the Bancroft locations outperform the results from the other methods for shallow earthquakes near sea level, where a quantity known as the geometric dilution of precision is large and linearized approaches such as HYPOINVERSE are expected to struggle.

Alaska↗
USGS2024

Correlation analysis of groundwater and hydrologic data, Kaloko-Honokōhau National Historical Park, Hawai‘i

Designated in 1978, Kaloko-Honokōhau National Historical Park is located on the west coast of the Island of Hawaiʻi. The Kaloko-Honokōhau National Historical Park encompasses about 1,200 acres of coastal land and nearshore ecosystems, which include wetlands, anchialine pools (landlocked bodies of brackish water with hydrologic connections to the ocean), fishponds, a fishtrap, and coral reefs. These nearshore ecosystems are dependent on groundwater discharge with a freshwater component and provide habitat for threatened and endangered, endemic species, such as the orangeblack Hawaiian damselfly ( Megalagrion xanthomelas ) and the Hawaiian coot (ʻAlae keʻokeʻo, Fulica alai ). The populations of these native species, however, are threatened because of habitat loss related to urban development and environmental changes. Kaloko-Honokōhau National Historical Park is within the Keauhou aquifer system and the North Kona District, which experienced a 52 percent resident-population increase between 2000 and 2020 and a 41 percent visitor increase between 2008 and 2019. To support the current water demand associated with this growing population, groundwater is the primary source of freshwater used in the North Kona District, with about 15 million gallons of groundwater withdrawn from the Keauhou aquifer system per day since 2009. With anticipated development, future (2015–35) groundwater withdrawal from the Keauhou aquifer system is projected to be about 55 percent greater than recent (2012–14) withdrawal. Because Kaloko-Honokōhau National Historical Park is located within a coastal aquifer, natural and human-induced changes can affect the quality and quantity of groundwater, which can threaten groundwater-dependent ecosystems. To improve understanding of recent groundwater conditions, the U.S. Geological Survey, in cooperation with the National Park Service, undertook this study to document correlations between hydrologic time-series datasets from sites in and near Kaloko-Honokōhau National Historical Park using the nonparametric (distribution-free) Kendall’s tau statistical test. For the statistical analyses, dependent variables representing the groundwater system include groundwater level, the groundwater-level difference between pairs of sites, and specific conductance, and independent variables include datasets of sea level, rainfall, and groundwater withdrawal. About 34 percent of the 140 non-time-lagged Kendall’s tau statistical tests evaluated in this report are statistically significant ( p -value ≤ 0.050) with generally weak (0.1 ≤ tau ≤ 0.2) to moderate (0.2 ≤ tau ≤ 0.3) correlations. Groundwater levels measured at monitoring sites have the strongest correlation with the multivariate El Niño–Southern Oscillation index and withdrawal from production wells at the nearby Kohanaiki Private Club Community. Specific conductance is not consistently and significantly correlated with the independent hydrologic variables investigated in this report. Because the relations between hydrologic variables are commonly not instantaneous, a second set of correlations was evaluated after applying a range of time lags to the independent variable datasets. Relative to the non-time-lagged case (the set of correlations that did not use time-lagged independent variables), some of the time-lagged independent variables improved correlations with some of the dependent variables. For a particular independent variable, similar time lags were expected between the independent variable and dependent variable at all four monitoring sites. However, different time lags among the four sites sometimes produced the strongest correlations. This study identified several correlations that are statistically significant and hydrologically plausible, but the correlations could indicate that multiple concurrent factors are controlling the observed groundwater-system response, which might be better addressed using multivariate analyses. This study only investigates bivariate correlations, which may not explain all the variance in the data. The correlations analyzed in this report are limited by the quantity of available hydrologic data in the area near Kaloko-Honokōhau National Historical Park and are based on 14 years of time-series data, which were aggregated to a relatively coarse monthly temporal resolution that represents the minimum resolution common to all datasets.

Hawaii↗
USGS2026

Groundwater budget for the Mountain Home area, southern Idaho, 2022–23

The U.S. Geological Survey, with funding from the Idaho Department of Water Resources, developed a groundwater budget for the Mountain Home area in southern Idaho for irrigation year 2023 (November 1, 2022–October 31, 2023). This study focused on the water balance across the Cinder Cone Butte Critical Groundwater Area (CGWA), Mountain Home Groundwater Management Area (GWMA), and the rest of the study area (RoSA), compiling data from various sources, including precipitation records, groundwater level measurements, metered groundwater pumpage data, surface water diversions and evapotranspiration (ET) estimates derived from remote sensing satellite imagery, and ground-based reference data. Key inflow components included recharge from applied surface water irrigation (which incorporates incidental recharge from irrigation practices and conveyance losses), estimated tributary streamflow, and estimated mountain block recharge. The key outflow components were groundwater pumpage for irrigation, municipal, industrial, and domestic uses, and ET. Recharge from applied irrigation and mountain block recharge were the largest inflows, and groundwater pumpage for irrigation was the largest outflow. The CGWA had a positive groundwater budget residual of 2,170 acre-feet (acre-ft), which contrasts with observed long-term groundwater level declines and historical trends of storage depletion. This positive residual is likely associated with unquantified outflows, including lateral groundwater flow out of the subregion, or other complexities, such as overestimated tributary contributions relative to the actual recharge for the 2023 water budget. The GWMA exhibited a positive residual of 56,563 acre-ft, primarily owing to recharge from applied surface water irrigation and areal recharge during a wetter-than-average year, which allowed irrigation entities to deliver more water from in-basin and out-of-basin reservoirs. The RoSA showed a large positive residual of 124,933 acre-ft. The interpretation of these positive residuals must account for significant uncertainties, including estimations of areal recharge, tributary streamflow (particularly losses and diversions), ET, the volume of surface water loss to the Snake River, lateral groundwater flows between subregions and across study area boundaries, and the unquantified groundwater discharge to the Snake River. These uncertainties, in combination with the complex hydrogeologic controls on water movement and limitations of remotely sensed data, directly affect the accuracy of water availability assessments. Future data collection efforts would help reduce these uncertainties and support water resource management decisions in the Mountain Home area. Key efforts could include installing additional streamflow gaging stations (particularly to quantify tributary losses and gains and surface water losses to the Snake River), improving groundwater pumpage metering, and validating remotely sensed ET data with ground-based measurements. Furthermore, to better quantify unrepresented or highly uncertain fluxes, focused investigations on groundwater discharge to the Snake River, lateral groundwater flows between subregions and across study area boundaries, and a more robust determination of the actual influence and volume of mountain block recharge would help refine future water availability assessments for the Mountain Home area.

Idaho↗