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At least 91 records · Page 5Linked to original sources

Assessment of multi-stressors on compositional turnover of diatom, invertebrate and fish assemblages along an urban gradient in Pacific Northwest streams (USA)

This study is part of the regional stream-quality assessment (RSQA) conducted by the U.S. Geological Survey (USGS) National Water Quality Assessment (NAWQA) project. The purpose of this study is to examine small streams along land-use and stressor gradients at the regional scale and to evaluate the relative importance of instream stressors on diatom, macroinvertebrate, and fish assemblages. In 2015, the RSQA project assessed stream quality in 82 wadeable streams that were selected along an urban land-use gradient in the Pacific Northwest Region (PNW) of the United States. This study evaluates the effects of four major categories of measured instream stressors – flow (i.e. alteration), water quality, habitat, and contaminants (in water and sediment) – on stream biota. We used gradient forest (GF) models to evaluate taxon specific responses to the various stressors for the three biotic assemblages. Results for diatom, invertebrate and fish assemblages showed that several environmental variables including substrate size, dissolved oxygen, and two or more different contaminants were selected in each of the GF models. In general, all three assemblages were negatively associated with any contaminant measures above zero, except the more tolerant taxa in each assemblage, which responded positively to contaminants. Total nitrogen (TN) and total phosphorus (TP) were important in both the diatom and invertebrate GF models but not in the fish models, which were related to temperature and stream flow. TP and TN were the top two variables for diatom GF models and various taxa responded at a range of nutrient concentrations; however, some taxa responded at low concentrations, for example around 0.02 for TP and 0.5 mg/L for TN. In general, the three biotic assemblages responded to multiple stressors following general patterns of known sensitive versus tolerant taxa for each of the biotic groups studied, yet the GF models allow us to explore taxon specific responses. For example, most of the sensitive Ephemeroptera, Plecoptera, Trichoptera invertebrate taxa (EPT) responded negatively when any contaminant increased above zero; yet some taxa such as the tolerant Trichoptera Cheumatopsyche responded positively to contaminants and many of the other stressors. The findings of this study demonstrate the value of using multiple assemblages to monitoring stressor gradients associated with urban stream systems and the importance of evaluating the responses of individual taxa to stressors.

Washington, Oregon

Pop-up archival transmitting (PAT) tags: A method to investigate the migration and behavior of Pacific halibut ( Hippoglossus stenolepis ) in the Gulf of Alaska

Pop-up archival transmitting (PAT) tags provide a fisheries-independent method of collecting environmental preference data (depth and ambient water temperature) and migration distance. In this study, we evaluate the use of pop-up archival transmitting tags as a method to investigate demersal fish. We report the results from eight pop-up archival transmitting tagged Pacific halibut Hippoglossus stenolepis (from 107 to 165 cm FL) that were released in and around Resurrection Bay, Alaska. Commercial fishermen recovered three tags, while five tags transmitted data to Argos satellites. Horizontal migration was not consistent among fish as four Pacific halibut remained in the vicinity of release while the other four traveled up to 358 km from the release site. Vertical movement was not consistent among fish or over time; however, they spent most of their time at depths of 150 to 350 m. The minimum and maximum depths reached by any of the Pacific halibut were 2 m and 502 m, respectively. The fish preferred water temperatures of approximately 6°C, but experienced temperatures between 4.3 and 12.2°C. Light attenuation with depth prevented geolocation software and light sensing hardware from accurately estimating geoposition for the majority of days. The methods, adapted from investigations on large pelagic fish, proved to be effective for studying Pacific halibut in the northern Gulf of Alaska. PAT tags allowed us to obtain high accuracy locations of the fish at the end of the tag deployments as well as preliminary data to identify approximate seasonal locations and to characterize their depth and temperature characteristics. By using PAT tags, we will be able to ensure tag returns during the winter season (which is closed to fishing) and gain valuable biological information even if fish migrate large distances or to unexpected locations.

Alaska Fishery Research Bulletin

An Angus/Argo study of the neovolcanic zone along the East Pacific rise from the Clipperton fracture zone to 12°N

Still photographs and video images collected along the Neovolcanic Zone of the East Pacific Rise from 10°15′N to 11°53′N show that recent volcanic sheet flows, possibly less than 100 years old, are superimposed on an older sediment-laden pillow terrane. This recent activity is restricted to a narrow zone that crosses two topographic highs at 10°55′N and 11°26′N and diminishes along-axis away from these highs. The association of recent sheet flows with older flows and collapse structures on the overlapping spreading centers at 11°45′N supports the evolutionary model for the occurrence and evolution of overlapping spreading centers by MacDonald and others (1986, 1988).

Geo-Marine Letters

Ecology and habitat of breeding Northern Goshawks in the inland Pacific Northwest: A summary of research in the 1990s

During the 1990s, we conducted research on the distribution, productivity, and habitat relationships of Northern Goshawks (Accipiter gentilis) in eastern Oregon and Washington. Our research was initiated primarily in response to concerns raised about the status of Northern Goshawks in the western US, and coincided with early attempts to list the species as threatened or endangered under the Endangered Species Act and the publication of management guidelines for goshawks in the southwestern US. To develop baseline information on the status, distribution, and habitat relationships of goshawks in eastside forests (i.e., east of the Cascade Mountain Range) in the Pacific Northwest, we established study areas on three national forests in eastern Oregon in 1992, adding a fourth study area in central Washington in 1994. We focused on the breeding season and nesting habitat because of its primary importance to goshawk ecology and the logistical feasibility of finding nests. Density of breeding pairs ranged from 0.03-0.09/100 ha, and annual productivity ranged from 0.3-2.2 young fledged/nest. Goshawks selected forest stands with trees of larger diameter and greater canopy closure for nesting than available in the landscape. Occasionally nests could be found in large trees in open-canopied stands. As distance increased from the nest site, forest type and structure became more heterogeneous and the prevalence of older-seral-stage forest declined. Dry or wet openings were present in most territories, often within close proximity to nest stands. Goshawks ate a variety of mammalian and avian prey. Mammal species made up a larger portion of prey biomass on two of the national forests, but avian species appeared to be more prevalent in the diet of goshawks in the most northern study area. We recommend that the existing management guidelines for goshawks in the Southwest form a basis for management in the inland Pacific Northwest, particularly with regard to nested spatial concepts, emphasis on management of prey, and the use of silviculture to promote the development and replacement of old growth or late-seral-stage forest. Our research and management recommendations can be used in concert with the Southwestern management guidelines to establish a mix of vegetation structural stages to support goshawk populations, their prey, and other forest wildlife species specifically for the inland Pacific Northwest.

Studies in Avian Biology

Quantitative estimation of undiscovered mineral resources: A case study of US Forest Service Wilderness tracts in the Pacific Mountain system

The need by land managers and planners for more quantitative measures of mineral values has prompted scientists at the U.S. Geological Survey to test a probabilistic method of mineral resource assessment on a portion of the wilderness lands that have been studied by the Survey during the past 20 years. A quantitative estimate of undiscovered mineral resources is made by linking the techniques of subjective estimation, geologic mineral deposit models, and Monte Carlo simulation. The study, which uses grade-tonnage and occurrence models for 21 geologic deposit types, considers 91 U.S. Forest Service wilderness tracts in California, Nevada, Oregon, and Washington. Estimates of the amounts of the 11 metals contained in undiscovered mineral deposits of the types studied range from negligible to several years of U.S. consumption. Although these estimates are limited to metals contained in undiscovered deposits of a small number of metallic mineral deposit types, the assessment procedure can be expanded by the use of additional deposit models and by using information about identified mineral resources. This will allow models of economic processes such as exploration, development, and production to be applied.

Economic Geology

Anesthesia of juvenile Pacific Lampreys with MS-222, BENZOAK, AQUI-S 20E, and Aquacalm

Effective anesthetics are a critical component of safe and humane fish handling procedures. We tested three concentrations each of four anesthetics—Finquel (tricaine methanesulfonate, herein referred to as MS-222), BENZOAK (20% benzocaine), AQUI-S 20E (10% eugenol), and Aquacalm (metomidate hydrochloride)—for efficacy and safety in metamorphosed, outmigrating juvenile Pacific Lampreys Entosphenus tridentatus . The anesthetics MS-222 (100 mg/L) and BENZOAK (60 mg/L) were the most effective for anesthetizing juvenile Pacific Lampreys to a handleable state with minimal irritation to the fish. Fish anesthetized with BENZOAK also had lower rates of fungal infection than those exposed to MS-222, AQUI-S 20E, or no anesthetic. Exposure to AQUI-S 20E irritated juvenile Pacific Lampreys, causing them to leap or climb out of the anesthetic solution, and Aquacalm anesthetized fish to a handleable state too slowly and incompletely for effective use with routine handling procedures. Our results indicate that MS-222 and BENZOAK are effective anesthetics for juvenile Pacific Lampreys, but field studies are needed to determine whether exposure to MS-222 increases risk of fungal infection in juvenile Pacific Lampreys released to the wild.

North American Journal of Fisheries Management

Importance of benthic prey for fishes in coral reef-associated sediments

The importance of open, sandy substrate adjacent to coral reefs as habitat and a food source for fishes has been little studied in most shallow tropical waters in the Pacific, including Hawai'i. In this study, in Hanalei Bay, Hiwai'i, we identified and quantified the major invertebrate fauna (larger than 0.5 mm) in the well-characterized sands adjoining the shallow fringing reefs. Concurrently, we identified the fish species that seemed to make substantial use of these sand habitats, estimated their density there, sampled their gut contents to examine trophic links with the sand habitat, and made other observations and collections to determine the times, locations, and types of activity there. A variety of (mostly small) polychaeres were dominant in the sediments at most sampling stations, along with many small crustaceans (e.g., amphipods, isopods, ostracods, and small shrimps) and fair numbers of mollusks (especially bivalves) and small echinoids. Fish guts examined contained ???77% of the total number of benthic taxa collected, including nearly all those just listed. However, fish consumption was selective, and the larger shrimps, crabs, and small cryptic fishes were dominant in the diets of most of the numerous predator taxa. Diets of benthic-feeding fishes showed relatively low specific overlap. The fish fauna in this area included substrate-indifferent pelagics, species with various degrees of reef relatedness, reef-restricted species, and (at the other extreme) permanent cryptic sand dwellers. Data on occurrence and movements of fishes indicated that a band of sandy substrate several tens of meters wide next to the reef was an active area for fishes, and activity was considerably different at different times of day and for fish of different ages. These results imply an important trophic role for the benthos in these near-reef habitats in support of reef-associated fishes.

Pacific Science

Abundance fluctuations among benthic invertebrates in two pacific estuaries

Long-term studies were used to examine (1) contrasting time scales and mechanisms of structural variations within two benthic communities and (2) the usefulness of long data sets for evaluating human impact. A 10-year study of a San Francisco Bay mudflat, the details of which are reported elsewhere, has revealed large short-term (on the order of months) variations in species abundances within a community composed predominantly of opportunistic species. The study site, located in a highly urbanized estuary, is subject to the influence of a nearby sewage-treatment facility. However, rapid changes in population size of the common species, in part due to periodic natural habitat disturbance, impedes the detection of anthropogenic influences on community composition. Only a very long-term data set may provide evidence of progressive change. Data collected for a 20-year period on the benthic community at 200 m depth in the main basin of Puget Sound, an environment subject to little apparent habitat disturbance show that numerical abundance of the common species can also change markedly. Here, however, numerical dominance shifts from one species to another at irregular, multiyear intervals. Recent increases in two heretofore rare species, and a significant increase in total numbers of individuals suggest that long-term changes may be occurring in this community. These two long-term data sets demonstrate the importance of measuring both the amplitude and the periodicity of fluctuations in population size of aquatic species as well as long-term fluctuations and patterns in environmental factors before attempting to demonstrate the effect of anthropogenic influences on aquatic communities. The results of these studies also demonstrate the usefulness of long-term data sets for revealing the potential importance of interactions among species in determining abundance patterns in the soft-bottom benthos.

Estuaries

Evaluation of the fish passage effectiveness of the Bonneville I prototype surface collector using three-dimensional ultrasonic fish tracking - Final Report

This report describes tests conducted at Bonneville Dam on the Columbia River in the spring of 2000. The studies used three-dimensional (3D) acoustic telemetry and computational fluid dynamics (CFD) hydraulic modeling techniques to evaluate the response of outmigrating juvenile steelhead (Oncorhynchus mykiss) and yearling chinook (O. tshawytscha) to the Prototype Surface Collector (PSC) installed at Powerhouse I of Bonneville Dam in 1998 to test the concept of using a deep-slot surface bypass collector to divert downstream migrating salmon from turbines. The study was conducted by Pacific Northwest National Laboratory (PNNL), the Waterways Experiment Station of the U.S. Army Corp of Engineers (COE), Asci Corporation, and the U.S. Geological Survey (USGS), and was sponsored by COE’s Portland District. The goal of the study was to observe the three-dimensional behavior of tagged fish (fish bearing ultrasonic micro-transmitters) within 100 meters (m) of the surface flow bypass structure to test hypotheses about the response of migrants to flow stimuli generated by the presence of the surface flow bypass prototype and its operation. Research was done in parallel with radio telemetry studies conducted by USGS and hydroacoustic studies conducted by WES & Asci to evaluate the prototype surface collector.

Report

Water in the Great Basin region; Idaho, Nevada, Utah, and Wyoming

The Great Basin Region is defined to include the drainage of the Great Basin physiographic section (Fennman, 1931) in Idaho, Nevada, Utah, and Wyoming. In October 1966, the President’s Water Resources Council requested that a comprehensive framework study be made in the Great Basin Region under the leadership of the Pacific Southwest Interagency Committee. The study, which included evaluation of the water resources of the region and guidelines for future study and development, was completed June 30, 1971. Results of the study received limited distribution. The purpose of this atlas is to make available to the public the hydrologic data (including a general appraisal) that were compiled for the comprehensive framework study. Most of the work was done by a water-resources work group consisting of members from several Federal and State agencies under the chairmanship of Thomas E. Eakin of the U.S. Geological Survey. This atlas contains some data not included in the framework study. The data presented herein are reconnaissance in nature and should be used with discretion. The maps are highly generalized and are intended only to illustrate the regional distribution of the supply and general chemical quality of the water. Sources of more detailed information on the hydrology of specific parts of the Great Basin region are listed in the selected references.

Idaho, Nevada, Utah, Wyoming

Assessing the population consequences of disturbance and climate change for the Pacific walrus

Climate change and anthropogenic disturbance are increasingly affecting wildlife at a global scale. Predicting how varying types and degrees of disturbance may interact to influence population dynamics is a key management challenge. Population consequences of disturbance (PCoD) models provide a framework to link effects of anthropogenic disturbance on an individual’s behavior and physiology to population-level changes. In the present study, we develop a Pacific walrus ( Odobenus rosmarus divergens ) PCoD model to encompass the population-level effects of both anthropogenic disturbance and climate change. As the Arctic becomes increasingly ice-free, walruses spend more time at coastal (vs. ice-based) haulouts, from which they must expend more energy to reach foraging areas and where they have an elevated risk of mortality. Concurrently, sea ice loss is increasing the anthropogenic footprint in the Arctic (e.g. fisheries, shipping, energy exploration), which creates additional disturbance. We applied the PCoD model to 4 scenarios (ranging from optimistic to pessimistic) which incorporate different global sea ice model projections along with varying degrees of anthropogenic disturbance. All scenarios indicated a decline in Pacific walrus vital rates by the end of the 21st century, but our results demonstrated that the intensity of that decline could be mitigated by global efforts to reduce carbon emissions, along with local management and conservation efforts to protect important coastal haulouts and foraging grounds. In summary, we introduce a flexible PCoD modeling framework in a novel context which will prove useful to researchers studying species threatened by rapid environmental change.

Marine Ecology Progress Series

Tropical Pacific silicoflagellate zonation and paleotemperature trends of the late Cenozoic

Quantitative study of late Cenozoic silicoflagellates at tropical Pacific DSDP Sites 572 and 575 shows that the greatest amplitude of fluctuation in relative paleotemperature values occurred in the late Miocene. The coolest minimum paleotemperature values (near 75 = 30) also occurred in the late Miocene. The warmest intervals (Ts = 80 to 100) occurred in the middle Miocene and late Pliocene to Quaternary. In detail, the silicoflagellate relative paleotemperature curve correlates fairly well with the eustatic sea-level curve and deep-sea hiatus sequence. The only upper Cenozoic low-latitude biostratigraphic units not identified are the Distephanus speculum haliomma Subzone and Naviculopsis quadrata Zone, owing to the absence of the nominative species, which probably had nontropical ecologic preference. Several Naviculopsis occurrence events within the Naviculopsis ponticula Zone correlate between DSDP Hole 575A and DSDP Hole 495 off Guatemala. Many local and regional biostratigraphic events are recognized. New taxa identified from DSDP Leg 85 include Dictyocha nola Bukry, n. sp., Distephanus stradneri var. grandis Bukry, n. var., Mesocena elliptica var. rhomboidea Bukry, n. van, and Naviculopsis obtusarca var. acicula Bukry, n. var.

Initial Reports of the D.S.D.P.

Movements of juvenile Pacific Lamprey (Entosphenus tridentatus) in the Yakima and Columbia Rivers, Washington, 2018—A pilot study using acoustic telemetry

Telemetry has been an invaluable tool to improve our understanding of adult Pacific Lamprey ( Entosphenus tridentatus ) movements and to guide management approaches to protect and restore this species of concern. Juvenile and larval lamprey, however, are much smaller than adults, and have not been monitored with telemetry because available transmitters have traditionally been too large. With funding from the U.S. Department of Energy and the U.S. Army Corps of Engineers, the Pacific Northwest National Laboratory developed a prototype micro-transmitter of appropriate size for use in small fish such as juvenile lampreys and eels. Through a collaborative research approach, we used these prototype transmitters to do a pilot level evaluation of juvenile lamprey (macrophthalmia) movements in the Yakima and Columbia Rivers in 2018. Our project monitored tagged lamprey using acoustic monitoring arrays installed and maintained for juvenile salmon ( Oncorhynchus spp.) migration studies done by our partners. The study was done in the lower Yakima River, Washington, from river mile 111 to the river mouth, and in the Columbia River, from the Yakima River mouth to Camas, Washington, downstream of Bonneville Dam. We released four groups of tagged lamprey from May 9 to 15, 2018. Two groups were released at the upper site (located at the State Route 24 bridge, about 4.5 river miles upstream of Wapato Dam), and two groups were released at the lower site (about 1.7 miles upstream of the Yakima River mouth). We detected 95.6 percent of the tagged lamprey, with more individuals detected in the Columbia River than in the Yakima River. Lamprey arrived at Bonneville Dam in an average of 8.0–9.6 days from the upper site (300 river miles) and in an average of 6.5 days from the lower site (193 river miles). Lamprey moved through the study area at an average rate of 30–35 miles per day and generally remained at each detection site for less than about 20 minutes. Most lamprey (63 percent) arrived at detection sites during periods of darkness, but some travel occurred during daylight and transitional light periods.

Washington

Behavioral responses of Pacific lamprey to alarm cues

Pacific lamprey ( Entosphenus tridentatus ), an anadromous ectoparasite, faces several challenges during adult migration to spawning grounds. Developing methods to address these challenges is critical to the success of ongoing conservation efforts. The challenges are diverse, and include anthropogenic alterations to the ecosystem resulting in loss of habitat, impassable barriers such as dams, climate change impacts, and altered predator fields. We conducted a behavioral study to understand how adult migrating Pacific lamprey respond to potential alarm cues: White Sturgeon ( Acipenser transmontanus ), human saliva, decayed Pacific lamprey, and river otter ( Lontra canadensis ). Research has shown that some species of lamprey can be guided to a location using odors and similar cues may be useful as a management tool for Pacific lamprey. Experiments were conducted over 2 nights and measured the number of entries (count) and duration of time spent (occupancy) by adult lamprey in each arm of a two-choice maze. During the first night, no odor was added to test for selection bias between arms. During the second night odor was added to one arm of the maze. Contrary to expectations, lamprey were significantly attracted to the river otter odor in both count and occupancy. No significant differences were found in the response of lamprey to the other three odors. Results from this study indicate that Pacific lamprey do respond to some odors; however, additional tests are necessary to better identify the types of odors and concentrations that elicit a repeatable response.

Oregon, Washington

Developmental instability in the Pacific Hake parasitized by the Myxosporean Kudoa spp.

A morphometric study of the otoliths of a population of Pacific hake Merluccius productus was conducted to detect developmental instability (DI) related to parasitism by Myxosporeans, Kudoa spp. We report a link between parasitism and DI, which we measured as fluctuating asymmetry by comparing the right–left differences in otolith shape, width, and weight in the same fish. Otolith shape provided the most sensitive measurement of DI asymmetry. Results suggest that Kudoa spp. could be a strong agent of selection in the Pacific hake.

Transactions of the American Fisheries Society

Size, growth, and density data for shallow-water sea urchins from Mexico to the Aleutian Islands, Alaska, 1956–2016

Size, growth, and density have been studied for North American Pacific coast sea urchins Strongylocentrotus purpuratus , S. droebachiensis, S. polyacanthus , Mesocentrotus (Strongylocentrotus) franciscanus , Lytechinus pictus , Centrostephanus coronatus , and Arbacia stellata by various workers at diverse sites and for varying lengths of time from 1956 to present. Numerous peer-reviewed publications have used some of these data but some data have appeared only in graduate theses or the gray literature. There also are data that have never appeared outside original data sheets. Motivation for studies has included fisheries management and environmental monitoring of sewer and power plant outfalls as well as changes associated with disease epidemics. Studies also have focused on kelp restoration, community effects of sea otters, basic sea urchin biology, and monitoring. The data sets presented here are a historical record of size, density, and growth for a common group of marine invertebrates in intertidal and nearshore environments that can be used to test hypotheses concerning future changes associated with fisheries practices, shifts of predator distributions, climate and ecosystem changes, and ocean acidification along the Pacific Coast of North America and islands of the north Pacific.

Pacific Coast

Subsurface swimming and stationary diving are metabolically cheap in adult Pacific walruses (Odobenus rosmarus divergens)

Walruses rely on sea-ice to efficiently forage and rest between diving bouts while maintaining proximity to prime foraging habitat. Recent declines in summer sea ice have resulted in walruses hauling out on land where they have to travel farther to access productive benthic habitat while potentially increasing energetic costs. Despite the need to better understand the impact of sea ice loss on energy expenditure, knowledge about metabolic demands of specific behaviours in walruses is scarce. In the present study, 3 adult female Pacific walruses ( Odobenus rosmarus divergens ) housed in professional care participated in flow-through respirometry trials to measure metabolic rates while floating inactive at the water surface during a minimum of 5 min, during a 180 s stationary dive, and while swimming ∼90 m horizontally underwater. Metabolic rates during stationary dives (3.82±0.56 l O 2 min −1 ) were lower than those measured at the water surface (4.64±1.04 l O 2 min −1 ), which did not differ from rates measured during subsurface swimming (4.91±0.77 l O 2 min −1 ). Thus, neither stationary diving nor subsurface swimming resulted in metabolic rates above those exhibited by walruses at the water surface. These results suggest that walruses minimize their energetic investment during underwater behaviours as reported for other marine mammals. Although environmental factors experienced by free-ranging walruses (e.g. winds or currents) likely affect metabolic rates, our results provide important information for understanding how behavioural changes affect energetic costs and can be used to improve bioenergetics models aimed at predicting the metabolic consequences of climate change on walruses.

Journal of Experimental Biology

Survival outcome patterns revealed by deploying advanced tags in quantity: Pacific halibut (Hippoglossus stenolepis) survivals after release from trawl catches through expedited sorting

Bycatch of Pacific halibut ( Hippoglossus stenolepis ) limits many trawl fisheries in Alaska and greatly concerns stakeholders from local communities and fisheries that rely on Pacific halibut. To reduce Pacific halibut mortality, trawlers in the Bering Sea that target flatfish have been developing expedited release procedures to sort Pacific halibut from catches earlier than current regulations allow, while continuing accurate bycatch accounting. We studied survival rates of released Pacific halibut from three trawlers by deploying accelerometer-equipped pop-up satellite archival tags (PSATs) on 160 fish handled under expedited procedures. PSATs recorded and transmitted two metrics indicating swimming activity every 2 h while attached to the fish (for up to 60 days). Analysis of the resulting survival outcomes largely validated current survival-estimation methods, based on structured viability assessments, and found that longer fish length, shorter duration of air exposure, and shorter duration of trawl tow improved predicted Pacific halibut survival. Differences in these results were detected among vessel trips and species targeted by trawling. PSATs provided detailed data from nearly all tagged fish, while exposing fish to conditions experienced by normal releases.

Canadian Journal of Fisheries and Aquatic Sciences