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USGS2023

The usability gap in water resources open data and actionable science initiatives

The open data movement represents a major advancement for informed water management. Data that are findable, accessible, interoperable, and reusable—or FAIR —are now prerequisite to responsible data stewardship. In contrast to FAIR, accessibility and usability case studies and guidelines designed around human access and understanding are lacking in the literature, especially for water resources. Such decision support guidelines are critical because (i) inherent visual design trade-offs are not best made using intuition or feedback (perceived preference), and (ii) choosing designs requires a nuanced understanding of why and how the design works (revealed effectiveness). Thus, the goal of this commentary is to highlight knowledge gaps and discuss a general usability testing method which can be applied to any water resources decision support product. The user-testing approach includes (i) interviews about visualization goals, audiences, and the uses and decisions made with the data products, (ii) diagnosis of usability challenges, and (iii) redesign of decision support products given best practices and control versus treatment with intended end-user audiences. We illustrate the method using high-profile U.S. Geological Survey water science products. In sum, optimizing and testing for usability and understandability are as central to stakeholder use as FAIR standards are, and warrant being part of the development of data products and geovisualizations.

Journal of the American Water Resources Associatio↗

USGS2024

Developing a photography-based harvest survey to estimate age and subspecies composition of midcontinent sandhill cranes

Midcontinent sandhill cranes ( Antigone canadensis ) are managed as a single population, but hunting regulations are structured so harvest is targeted towards the more numerous lesser sandhill cranes ( A. c. canadensis ). However, research indicates that greater sandhill cranes ( A. c. tabida ) have been disproportionally exposed to harvest at a rate exceeding their proportion within the midcontinent population. In addition, harvest has increased 22% per year in the U.S. Central Flyway states. The midcontinent population appears to be growing in recent years, but variability in annual abundance estimates has increased substantially. With limited resources and harvest management uncertainty increasing, we developed methods for a citizen science, photography-based harvest survey to estimate age and subspecies composition of harvested midcontinent sandhill cranes. To develop survey methods, we collected physical parts from 284 sandhill cranes in North Dakota in 2019 and 2020. We manually measured the culmen and tarsus using calipers, and digitally measured these parts using photographs and computer software. All digitally derived measurements were 2.5% to 5.9% larger than manual measurements; therefore, we developed linear models that adjusted digital measurements, facilitating subspecies prediction using an existing morphometric-based technique. In 2021, we requested an equal number of hunters to participate using 2 data collection methods to test if hunters could reliably take photographs suitable for digital measurement. Collection method 1 involved photographing the head and leg simultaneously, and Collection method 2 involved photographing the head only. Hunters submitted a total of 239 photographs. Only 80 of these photographs were submitted using Collection method 1, and 72% were suitable for digital measurement. Conversely, hunters submitted twice as many photographs using Collection method 2, and 88% of these photographs were deemed suitable. Although obtaining the tarsus measurement slightly improved subspecies predictability, Collection method 2 increased participation and usable data. We believe our results could be used to develop an operational survey of age and subspecies composition of midcontinent sandhill cranes, wherein a sample of crane hunters throughout the midcontinent population range would be asked to electronically submit a photograph of the head of each bird they harvest. A time series of age and subspecies composition of this population would provide managers with valuable information and improve harvest management at minimal additional cost and burden, compared to a traditional parts collection survey administered by mail.

Wildlife Society Bulletin↗

USGS2018

Phase 1 studies summary of major findings of the South Bay Salt Pond Restoration Project, South San Francisco Bay, California

Executive Summary The South Bay Salt Pond Restoration Project (Project) is one of the largest restoration efforts in the United States. It is located in South San Francisco Bay of California. It is unique not only for its size—more than 15,000 acres—but also for its location adjacent to one of the nation’s largest urban areas, home to more than 4 million people (Alameda, Santa Clara, and San Mateo Counties). The Project is intended to restore and enhance wetlands in South San Francisco Bay while providing for flood management, wildlife-oriented public access, and recreation. Restoration goals of the project are to provide a mosaic of saltmarsh habitat to benefit marsh species and managed ponds to benefit waterbirds, throughout 3 complexes and 54 former salt ponds. Although much is known about the project area, significant uncertainties remain with a project of this geographic and temporal scale of an estimated 50 years to complete the restoration. For example, in order to convert anywhere from 50 to 90 percent of the existing managed ponds to saltmarsh habitat, conservation managers first enhance the habitat of managed ponds in order to increase use by waterbirds, and provide migratory, wintering, and nesting habitat for more than 90 species of waterbirds. Project managers have concluded that the best way to address these uncertainties is to carefully implement the project in phases and learn from the outcome of each phase. The Adaptive Management Plan (AMP) identifies specific restoration targets for multiple aspects of the Project and defines triggers that would necessitate some type of management action if a particular aspect is trending negatively. U.S. Geological Survey (USGS) biologist Laura Valoppi served as the project Lead Scientist and oversaw implementation of the AMP in coordination with other members of the Project Management Team (PMT), comprised of representatives from the California State Coastal Conservancy, California Department of Fish and Wildlife, the Santa Clara Valley Water District, the U.S. Army Corps of Engineers, and the U.S. Fish and Wildlife Service. To implement the AMP, the PMT have selected and funded applied studies and monitoring projects to address key uncertainties. This information is used by the PMT to make decisions about current management of the project area and future restoration actions in order to meet project. This document summarizes the major scientific findings from studies conducted from 2009 to 2016, as part of the science program that was conducted in conjunction with Phase 1 restoration and management actions. Additionally, this report summarizes the management response to the study results under the guidance of the AMP framework and provides a list of suggested studies to be conducted in “Phase 2–A scorecard summarizing the Project’s progress toward meeting the AMP goals for a range of Project objectives.” The scoring to date indicates that the Project is meeting or exceeding expectations for sediment accretion and western snowy plover ( Charadrius alexandrinus nivosus ) recovery. There is uncertainty with respect to objectives for California gulls ( Larus californicus ), California least tern ( Sternula antillarum ), steelhead trout ( Oncorhynchus mykiss ), and regulatory water quality objectives. Water quality and algal blooms, specifically of the managed ponds, is indicated as trending negative. However, the vast majority of objectives are trending positive, including increased abundance for a number of bird guilds, increasing marsh habitat, maintenance of mudflats, visitor experience, estuarine fish numbers, and special-status marsh species numbers.

California↗

USGS2011

U.S. Geological Survey Fundamental Science Practices

The USGS has a long and proud tradition of objective, unbiased science in service to the Nation. A reputation for impartiality and excellence is one of our most important assets. To help preserve this vital asset, in 2004 the Executive Leadership Team (ELT) of the USGS was charged by the Director to develop a set of fundamental science practices, philosophical premises, and operational principles as the foundation for all USGS research and monitoring activities. In a concept document, 'Fundamental Science Practices of the U.S. Geological Survey', the ELT proposed 'a set of fundamental principles to underlie USGS science practices.' The document noted that protecting the reputation of USGS science for quality and objectivity requires the following key elements: - Clearly articulated, Bureau-wide fundamental science practices. - A shared understanding at all levels of the organization that the health and future of the USGS depend on following these practices. - The investment of budget, time, and people to ensure that the USGS reputation and high-quality standards are maintained. The USGS Fundamental Science Practices (FSP) encompass all elements of research investigations, including data collection, experimentation, analysis, writing results, peer review, management review, and Bureau approval and publication of information products. The focus of FSP is on how science is carried out and how products are produced and disseminated. FSP is not designed to address the question of what work the USGS should do; that is addressed in USGS science planning handbooks and other documents. Building from longstanding existing USGS policies and the ELT concept document, in May 2006, FSP policies were developed with input from all parts of the organization and were subsequently incorporated into the Bureau's Survey Manual. In developing an implementation plan for FSP policy, the intent was to recognize and incorporate the best of USGS current practices to obtain the optimum overall program for our science. In January 2009, the USGS moved to full implementation of FSP. The FSP Advisory Committee (FSPAC) was formed to serve as the Bureau's working and standing committee to ensure the objectivity and quality of the Bureau's science information products and to provide support for the full implementation of FSP.

Circular↗

USGS2017

National Park Service Vegetation Mapping Inventory Program: Jean Lafitte National Historical Park and Preserve Vegetation Mapping Project

The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. The series supports the advancement of science, informed decision-making, and the achievement of the National Park Service mission. The series also provides a forum for presenting lengthier results that may not be accepted by publications with page limitations. All manuscripts in the series receive the appropriate level of peer review to ensure that the information is scientifically credible, technically accurate, appropriately written for the intended audience, and designed and published in a professional manner. This report received formal peer review by subject-matter experts whose background and expertise put them on par technically and scientifically with the authors of the information. The peer review was led according to the Fundamental Science Practices of the U.S. Geological Survey. Views, statements, findings, conclusions, recommendations, and data in this report do not necessarily reflect views and policies of the National Park Service, U.S. Department of the Interior. Mention of trade names or commercial products does not constitute endorsement or recommendation for use by the U.S. Government. This report is available in digital format from the Gulf Coast Network website and the Natural Resource Publications Management website.

Louisiana↗

USGS2022

The potential of semi-structured citizen science data as a supplement for conservation decision-making: Validating the performance of eBird against targeted avian monitoring efforts

Methods are being developed to capitalize on citizen science data for research and monitoring, but these data are rarely used within established decision-making frameworks of wildlife agencies. Citizen science data are often collected at higher resolution and extent than targeted monitoring programs, and may provide complementary information. Here, we demonstrate that carefully filtered semi-structured citizen science observations, when paired with targeted survey data, can produce ecological predictions at higher resolution and extent than targeted surveys alone, and both datasets can represent complementary aspects of species' ecology. We present case studies demonstrating how citizen science data can enhance or supplement decision-making of government and conservation organizations. First, we show how the continuous spatial coverage of citizen science projects, when coupled with targeted surveys, can improve estimates of metrics used by the U.S. Fish and Wildlife Service in regulatory processes to estimate population size, and inform take limits of federally managed species nationwide. Second, we show that the spatial coverage of citizen science accommodates dynamic avian space use patterns during key times of the year, relative to standardized monitoring protocols carried out by the Illinois Natural History Survey. Lastly, we demonstrate that citizen science information can replicate estimates of migratory chronologies for the Illinois Natural History Survey and the U.S. Fish and Wildlife Service for some waterfowl species, and in some contexts can supplement missing data on abundance. These findings illustrate the value of integrating validated information from semi-structured citizen science into the current evidence base used to justify, inform, and evaluate conservation decision-making.

California, Illinois, Iowa, Missouri↗

USGS2019

Intermountain west drought social science synthesis working group: Report to the National Climate Adaptation Science Center

Throughout the Intermountain West, there has been significant investment in understanding how social factors influence manager and citizen experiences of drought in particular locations. Yet there is still a gap in knowledge of how human dimensions of drought impacts, planning, and resilience are similar and different across cases and regions. Building on the natural science understanding developed by the USGS’ various ecological drought projects as well as a range of other place-based social science case studies of drought and its impacts, this project explored human dimensions of ecological drought across the intermountain west from a comparative, regional perspective. The Working Group brought together agency and university experts in the field of drought social science, including researchers affiliated with the North Central and South Central Climate Adaptation Science Centers (USGS), Western Water Assessment (a NOAA RISA program), the Northern Plains Climate Hub (USDA), and the USGS-supported SNAPP Ecological Drought Working Group. The group held three virtual meeting during Spring 2018 in preparation for an extended in-person workshop in June 2018 in Fort Collins, CO, followed by monthly calls to finalize products. The group’s objectives were to (1) integrate insights from existing social science studies of drought to identify commonalities and trends that generalize across cases while simultaneously accounting for the complexity experienced in particular places by individual decision makers, (2) develop a common lexicon and analytic framework for understanding drought across the Intermountain West from a social-ecological systems perspective, (3) identify emergent research themes, questions, and needs, (4) consider strategies for social scientists to contribute to drought management, (5) facilitate coordination among federal and university researchers for future collaborative activities, and (6) develop a typology of drought decision making that captured group insights. Project outputs included two conference sessions, a typology manuscript to be submitted by the end of FY19, and the conceptual framing of a rapid assessment methodology that was subsequently developed into a standalone project.

Cooperator Report↗

USGS2014

EAARL-B coastal topography: Fire Island, New York, pre-Hurricane Sandy, 2012: seamless (bare earth and submerged)

These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography datasets were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida. This project provides highly detailed and accurate datasets for part of Fire Island, New York, acquired pre-Hurricane Sandy on October 27, 2012. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar, known as the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B), was used during data acquisition. The EAARL-B system is a raster-scanning, waveform-resolving, green-wavelength (532-nm) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL-B sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, down-looking red-green-blue (RGB) and infrared (IR) digital cameras, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL-B platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL-B system. The resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed originally in a NASA-USGS collaboration. The exploration and processing of lidar data in an interactive or batch mode is supported using ALPS. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. The Airborne Lidar Processing System (ALPS) is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the "bare earth" under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Lidar for Science and Resource Management Web site.

New York↗

USGS2018

U.S. Geological Survey science for the Wyoming Landscape Conservation Initiative—2016 annual report

This is the ninth annual report highlighting U.S. Geological Survey (USGS) science and decision-support activities conducted for the Wyoming Landscape Conservation Initiative (WLCI). The activities address specific management needs identified by WLCI partner agencies. In fiscal year (FY) 2016, there were 26 active USGS WLCI science-based projects. Of these 26 projects, one project was new for FY2016, and three were completed by the end of the fiscal year (though final products were still in preparation or review). USGS WLCI projects were grouped under five categories: (1) Baseline Synthesis, (2) Long-Term Monitoring, (3) Effectiveness Monitoring, (4) Mechanistic Studies of Wildlife, and (5) Data and Information Management. Each of these topic areas is designed to address WLCI management needs: identifying key drivers of change, identifying the condition and distribution of key wildlife species and habitats and of species’ habitat requirements, development of an integrated inventory and monitoring strategy, use of emerging technologies and development and testing of innovative methods for maximizing the efficiency and efficacy of monitoring efforts, evaluating the effectiveness of habitat treatment projects, evaluating the responses of wildlife to development, and developing a data clearinghouse and information management framework to support and provide access to results of most USGS WLCI projects. In FY2016, we assisted with updating the WLCI Conservation Action Plan and associated databases as part of the Comprehensive Assessment, and we also assisted with the Bureau of Land Management 2015 WLCI annual report. By the end of FY2016, we completed or had nearly completed assessments of WLCI energy and mineral resources and had submitted a manuscript on modeled effects of oil and gas development on wildlife to a peer-reviewed journal. We also initiated a study on the effects of wind energy on wildlife in the WLCI region. A USGS circular on WLCI long-term monitoring was in review at the end of the fiscal year, and seven projects monitoring water and vegetation (including changes in sagebrush cover and patterns of sagebrush mortality) continued through the year. USGS scientists continued many projects in FY2016 that evaluate the effectiveness of habitat conservation actions (including sagebrush, cheatgrass, and aspen habitat treatments) and provide tools in support of mechanistic studies of wildlife. In FY2016, USGS scientists, along with university and State partners, continued work on five focal wildlife species/communities (pygmy rabbits [ Brachylagus idahoensis ], greater sage grouse , mule deer, sagebrush songbirds, and native fish). In FY2016, the USGS Information Management Team presented information to WLCI scientists on how USGS tools and resources can be used to fulfill the requirements of new USGS policies regarding data release, data management, and data visualization.

Wyoming↗

USGS2021

Using structured decision making to incorporate ecological and social values into harvest decisions: Case studies of white-tailed deer and walleye

Harvest decisions for fish and wildlife populations often include conflicting ecological, economic, and social values. Using decision analysis, such as structured decision making and adaptive management, as a framework to aid decision makers in multi-objective decision making for setting harvest regulations can lead to a more transparent and resilient decision. The process includes opportunities for inclusion of stakeholders’ concerns, either through multi-party workshops or the use of social science techniques to elicit objectives (i.e., values) and predict consequences of management actions. The authors present two case studies of using decision analysis to determine stakeholders’ objectives, identify alternative harvest strategies, predict the consequences of these alternatives on all objectives, and analyze tradeoffs among objectives. A case study of white-tailed deer ( Odocoileus virginianus ) in New York State provides an example of combining predictive population modeling and implementation of survey instruments statewide to determine optimal region-specific harvest regulations. Harvest management of walleye ( Sander vitreus ) provides an example of the inclusion of commercial and recreational angler groups in a series of workshops to make decisions about harvest quotas for one of the world’s largest freshwater fisheries.

Book chapter↗

USGS2013

Conservation and Ecology of Marine Forage Fishes--Proceedings of a Research Symposium, September 2012

Locally and globally, there is growing recognition of the critical roles that herring, smelt, sand lance, eulachon, and other forage fishes play in marine ecosystems. Scientific and resource management entities throughout the Salish Sea, agree that extensive information gaps exist, both in basic biological knowledge and parameters critical to fishery management. Communication and collaboration among researchers also is inadequate. Building on the interest and enthusiasm generated by recent forage fish workshops and symposia around the region, the 2012 Research Symposium on the Conservation and Ecology of Marine Forage Fishes was designed to elucidate practical recommendations for science and policy needs and actions, and spur further collaboration in support for the precautionary management of forage fish. This dynamic and productive event was a joint venture of the Northwest Straits Commission Forage Fish Program, U.S. Geological Survey (USGS), Washington Department of Fish and Wildlife (WDFW), and The Puget Sound Partnership. The symposium was held on September 12–14, 2012, at the University of Washington, Friday Harbor Laboratories campus. Sixty scientists, graduate students, and fisheries policy experts convened; showcasing ongoing research, conservation, and management efforts targeting forage fish from regional and national perspectives. The primary objectives of this event were to: (1) review current research and management related to marine forage fish species; and (2) identify priority science and policy needs and actions for Washington, British Columbia, and the entire West Coast. Given the diversity of knowledge, interests, and disciplines surrounding forage fish on both sides of the international border, the organizing committee made a concerted effort to contact many additional experts who, although unable to attend, provided valuable insights and ideas to the symposium structure and discussions. The value of the symposium format was highlighted in the closing remarks delivered by Joseph Gaydos, SeaDoc Society and Chair of the Puget Sound Science Panel. Dr. Gaydos’ presentation referenced the 2011 paper by Murray Rudd in the journal Conservation Biology , “How research-prioritization exercises affect conservation policy.” The paper points out that policy makers and funding agencies are more likely to gain a full understanding of issues when they are presented with research findings from an aligned research program. That is, compared to unaligned research strategies, where work is not based on identified research priorities.

Open-File Report↗

USGS2023

Combining local, landscape, and regional geographies to assess plant community vulnerability to invasion impact

Invasive species science has focused heavily on the invasive agent. However, management to protect native species also requires a proactive approach focused on resident communities and the features affecting their vulnerability to invasion impacts. Vulnerability is likely the result of factors acting across spatial scales, from local to regional, and it is the combined effects of these factors that will determine the magnitude of vulnerability. Here, we introduce an analytical framework that quantifies the scale-dependent impact of biological invasions on native richness from the shape of the native species–area relationship (SAR). We leveraged newly available, biogeographically extensive vegetation data from the U.S. National Ecological Observatory Network to assess plant community vulnerability to invasion impact as a function of factors acting across scales. We analyzed more than 1000 SARs widely distributed across the USA along environmental gradients and under different levels of non-native plant cover. Decreases in native richness were consistently associated with non-native species cover, but native richness was compromised only at relatively high levels of non-native cover. After accounting for variation in baseline ecosystem diversity, net primary productivity, and human modification, ecoregions that were colder and wetter were most vulnerable to losses of native plant species at the local level, while warmer and wetter areas were most susceptible at the landscape level. We also document how the combined effects of cross-scale factors result in a heterogeneous spatial pattern of vulnerability. This pattern could not be predicted by analyses at any single scale, underscoring the importance of accounting for factors acting across scales. Simultaneously assessing differences in vulnerability between distinct plant communities at local, landscape, and regional scales provided outputs that can be used to inform policy and management aimed at reducing vulnerability to the impact of plant invasions.

Ecological Applications↗

USGS2001

International collaboration: The cornerstone of satellite land remote sensing in the 21st century

Satellite land remotely sensed data are used by scientists and resource managers world-wide to study similar multidisciplinary earth science problems. Most of their information requirements can be met by a small number of satellite sensor types. Moderate-resolution resource satellites and low-resolution environmental satellites are the most prominent of these, and they are the focus of this paper. Building, launching, and operating satellite systems are very expensive endeavors. Consequently, nations should change the current pattern of independently launching and operating similar, largely redundant resource and environmental satellite systems in favor of true and full collaboration in developing, launching, operating, and sharing the data from such systems of the future. The past decade has seen encouraging signs of increasing international collaboration in earth remote sensing, but full collaboration has not yet been attempted. A general strategy to achieve such international collaboration is presented here, including discussion of potential obstacles, ideas for organizing and overseeing the long-term process toward collaboration, and short-term objectives whereby early successes critical to accomplishing long-term goals can be achieved.

Space Policy↗

USGS2023

A global long-term daily reanalysis of reference evapotranspiration for drought and food-security monitoring

NOAA has developed a global reference evapotranspiration (ET 0 ) reanalysis using the UN Food and Agriculture Organization formulation (FAO-56) of the Penman-Monteith equation forced by MERRA phase 2 (MERRA2) meteorological and radiative drivers. The NOAA ET 0 reanalysis is provided daily from January 1, 1980 to the near-present at a resolution of 0.5° latitude × 0.625° longitude. The reanalysis is verified against station data across southern Africa, a region presenting both significant challenges regarding hydroclimatic variability and observational quantity and quality and significant potential benefits to food-insecure populations. These data are generated from observations from the Southern African Science Service Centre for Climate Change and Adaptive Land Management (SASSCAL) network. We further verified globally against spatially distributed ET 0 derived from two reanalyses–the Global Data Assimilation System (GDAS) and Princeton Global Forcing (PGF)–and these verifications produced similar results, yet demonstrated wide regional and seasonal differences. We also present cases that verify the operational applicability of the reanalysis in long-established drought, famine, crop- and pastoral-stress metrics, and in predictability assessments of drought forecasts.

Nature Scientific Data↗

USGS2014

The importance of context dependency for understanding the effects of low flow events on fish

The natural hydrology of streams and rivers has been extensively altered by dam construction, water diversion, and climate change. An increased frequency of low-flow events will affect fish by changing habitat availability, resource availability, and reproductive cues. I reviewed the literature to characterize the approaches taken to assess low-flow events and fish, the main effects of low-flow events on fish, and the associated mechanistic drivers. Most studies are focused on temperate streams and are comparative in nature. Decreased stream flow is associated with decreased survival, growth, and abundance of fish populations and shifts in community composition, but effects are variable. This variability in effects is probably caused by context dependence. I propose 3 main sources of context dependence that drive the variation in fish responses to low-flow events: attributes of the low-flow event, attributes of the habitat, and attributes of the fish. Awareness of these sources of context dependence can help managers interpret and explain data, predict vulnerability of fish communities, and prioritize appropriate management actions.

Freshwater Science↗

USGS2026

Birds, breakpoints, and baselines: How citizen science data can reveal ecological boundaries in Kenya’s Upper Tana watershed

Tropical watersheds are increasingly threatened by climate change, land-use conversion, and resource extraction, yet conventional biodiversity monitoring in these systems is often spatially and temporally limited. Citizen science offers a complementary approach, enabling biodiversity data collection over large areas that can supplement professional scientific surveys. We analyzed 10 years (2012–2022) of Upper Tana Watershed bird data from the Kenya Bird Map project, covering 114 pentads (9 × 9 km) within a 17,000 km 2 watershed to assess patterns of bird community composition and distribution across this watershed and to also evaluate the effects of environmental variables, seasonality, and sampling effort to help inform improvements in future citizen science projects. Citizen (or community) scientists recorded 575 species (>50% of Kenya’s total avifauna) in 74 families. Asymptotic species accumulation indicates that most probable species present in the watershed were detected. Threshold indicator taxa analysis revealed distinct ecological boundaries along elevation (∼1,500 m), precipitation (∼1,100 mm), and mean temperature (∼19°C) gradients, corresponding to a turnover from xeric savanna to mesic montane forest assemblages. Notably, bird communities showed little seasonal differentiation between wet and dry periods, consistent with dominance by resident year-round species. Data limitations including uneven survey distribution and frequency, absence of abundance metrics, and coarse representation of local environmental conditions that likely reduced our ability to detect fine-scale species–habitat relationships. Addressing these gaps through spatially balanced sampling at greater resolution, greater survey frequency in underrepresented areas, and improved capture of habitat metrics could strengthen the use of citizen-science bird data for watershed bioassessment. Our findings demonstrate that structured citizen-science initiatives can identify ecological boundaries and inform adaptive management of tropical socio-ecological systems under rapid environmental change.

Upper Tana watershed↗

USGS2009

Toward immunogenetic studies of amphibian chytridiomycosis: Linking innate and acquired immunity

Recent declines in amphibian diversity and abundance have contributed significantly to the global loss of biodiversity. The fungal disease chytridiomycosis is widely considered to be a primary cause of these declines, yet the critical question of why amphibian species differ in susceptibility remains unanswered. Considerable evidence links environmental conditions and interspecific variability of the innate immune system to differential infection responses, but other sources of individual, population, or species-typical variation may also be important. In this article we review the preliminary evidence supporting a role for acquired immune defenses against chytridiomycosis, and advocate for targeted investigation of genes controlling acquired responses, as well as those that functionally bridge the innate and acquired immune systems. Immunogenetic data promise to answer key questions about chytridiomycosis susceptibility and host-pathogen coevolution, and will draw much needed attention to the importance of considering evolutionary processes in amphibian conservation management and practice. ?? 2009 by American Institute of Biological Sciences.

BioScience↗

USGS2007

Water Budgets: Foundations for Effective Water-Resources and Environmental Management

INTRODUCTION Water budgets provide a means for evaluating availability and sustainability of a water supply. A water budget simply states that the rate of change in water stored in an area, such as a watershed, is balanced by the rate at which water flows into and out of the area. An understanding of water budgets and underlying hydrologic processes provides a foundation for effective water-resource and environmental planning and management. Observed changes in water budgets of an area over time can be used to assess the effects of climate variability and human activities on water resources. Comparison of water budgets from different areas allows the effects of factors such as geology, soils, vegetation, and land use on the hydrologic cycle to be quantified. Human activities affect the natural hydrologic cycle in many ways. Modifications of the land to accommodate agriculture, such as installation of drainage and irrigation systems, alter infiltration, runoff, evaporation, and plant transpiration rates. Buildings, roads, and parking lots in urban areas tend to increase runoff and decrease infiltration. Dams reduce flooding in many areas. Water budgets provide a basis for assessing how a natural or human-induced change in one part of the hydrologic cycle may affect other aspects of the cycle. This report provides an overview and qualitative description of water budgets as foundations for effective water-resources and environmental management of freshwater hydrologic systems. Perhaps of most interest to the hydrologic community, the concepts presented are also relevant to the fields of agriculture, atmospheric studies, meteorology, climatology, ecology, limnology, mining, water supply, flood control, reservoir management, wetland studies, pollution control, and other areas of science, society, and industry. The first part of the report describes water storage and movement in the atmosphere, on land surface, and in the subsurface, as well as water exchange among these compartments. Our ability to measure these phenomena and inherent uncertainties in measurement techniques also are discussed. The latter part of the report presents a number of case studies that illustrate how water-budget studies are conducted, documents how human activities affect water budgets, and describes how water budgets are used to address water and environmental issues.

Circular↗