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Full-range, solar-reflected hyperspectral microscopy to support earth remote sensing research

Over the past 20 years, hyperspectral microscopy has grown into a robust field of analysis for a number of applications. The visible to near-infrared (VNIR; 400 to 1000 nm) region of the spectrum has demonstrated utility for the characterization of healthy and diseased tissue and of biomolecular indicators at the cellular level. Here, we describe the development of a hyperspectral imaging (HSI) microscope that is aimed at material characterization to complement traditional stand-off, earth remote sensing with hyperspectral sensors. We combine commercial off the shelf technology to build an HSI microscope to collect spectral data with illumination provided by a tunable laser. Hyperspectral imaging microscopy (HIM) facilitates detailed examination of target materials at the subcentimeter spatial scale. The custom-built, laser illumination HSI microscope covers the NIR to shortwave infrared (NIR/SWIR; 900 to 2500 nm) solar-reflected spectral range. It is combined with a separate VNIR sensor (400 to 900 nm) that utilizes quartz–tungsten–halogen lamps for illumination. The combined sensors provide a means to collect <10,000 s of spectra in the full VNIR/SWIR spectral range from both pure substances and precisely engineered linear and nonlinear mixtures. The large abundance of spectra allows for a more detailed understanding of the variability and multivariate probability distributions of spectral signatures. This additional information aids in understanding the variability observed in ground truth spectra collected from portable spectrometers, and it greatly enhances sample description and metadata content. In addition, HIM data cubes can serve as proxies, as “microscenes,” for systems engineering applications such as trade studies for HSI acquired by air- and space-borne sensors.

Journal of Applied Remote Sensing↗

Significance of rotating ground motions on nonlinear behavior of symmetric and asymmetric buildings in near fault sites

Building codes in the U.S. require at least two horizontal ground motion components for three-dimensional (3D) response history analysis (RHA) of structures. For sites within 5 km of an active fault, these records should be rotated to fault-normal/fault-parallel (FN/FP) directions, and two RHA analyses should be performed separately (when FN and then FP are aligned with transverse direction of the structural axes). It is assumed that this approach will lead to two sets of responses that envelope the range of possible responses over all non-redundant rotation angles. This assumption is examined here using 3D computer models of a single-story structure having symmetric (that is, torsionally-stiff) and asymmetric (that is, torsionally flexible) layouts subjected to an ensemble of bi-directional near-fault strong ground motions with and without apparent velocity pulses. In this parametric study, the elastic vibration period of the structures is varied from 0.2 to 5 seconds, and yield strength reduction factors R is varied from a value that leads to linear-elastic design to 3 and 5. The influence that the rotation angle of the ground motion has on several engineering demand parameters (EDPs) is examined in linear-elastic and nonlinear-inelastic domains to form a benchmark for evaluating the use of the FN/FP directions as well as the maximum-direction (MD) ground motion, a new definition of horizontal ground motions for use in the seismic design of structures according to the 2009 NEHRP Provisions and Commentary.

Book↗

Multi-temporal RADARSAT-1 and ERS backscattering signatures of coastal wetlands in southeastern Louisiana

Using multi-temporal European Remote-sensing Satellites (ERS-1/-2) and Canadian Radar Satellite (RADARSAT-1) synthetic aperture radar (SAR) data over the Louisiana coastal zone, we characterize seasonal variations of radar backscat-tering according to vegetation type. Our main findings are as follows. First, ERS-1/-2 and RADARSAT-1 require careful radiometric calibration to perform multi-temporal backscattering analysis for wetland mapping. We use SAR backscattering signals from cities for the relative calibration. Second, using seasonally averaged backscattering coefficients from ERS-1/-2 and RADARSAT-1, we can differentiate most forests (bottomland and swamp forests) and marshes (freshwater, intermediate, brackish, and saline marshes) in coastal wetlands. The student t-test results support the usefulness of season-averaged backscatter data for classification. Third, combining SAR backscattering coefficients and an optical-sensor-based normalized difference vegetation index can provide further insight into vegetation type and enhance the separation between forests and marshes. Our study demonstrates that SAR can provide necessary information to characterize coastal wetlands and monitor their changes.

Photogrammetric Engineering and Remote Sensing↗

Variance of discharge estimates sampled using acoustic Doppler current profilers from moving boats

This paper presents a model for quantifying the random errors (i.e., variance) of acoustic Doppler current profiler (ADCP) discharge measurements from moving boats for different sampling times. The model focuses on the random processes in the sampled flow field and has been developed using statistical methods currently available for uncertainty analysis of velocity time series. Analysis of field data collected using ADCP from moving boats from three natural rivers of varying sizes and flow conditions shows that, even though the estimate of the integral time scale of the actual turbulent flow field is larger than the sampling interval, the integral time scale of the sampled flow field is on the order of the sampling interval. Thus, an equation for computing the variance error in discharge measurements associated with different sampling times, assuming uncorrelated flow fields is appropriate. The approach is used to help define optimal sampling strategies by choosing the exposure time required for ADCPs to accurately measure flow discharge.

Journal of Hydraulic Engineering↗

Designing a multi-objective, multi-support accuracy assessment of the 2001 National Land Cover Data (NLCD 2001) of the conterminous United States

The database design and diverse application of NLCD 2001 pose significant challenges for accuracy assessment because numerous objectives are of interest, including accuracy of land-cover, percent urban imperviousness, percent tree canopy, land-cover composition, and net change. A multi-support approach is needed because these objectives require spatial units of different sizes for reference data collection and analysis. Determining a sampling design that meets the full suite of desirable objectives for the NLCD 2001 accuracy assessment requires reconciling potentially conflicting design features that arise from targeting the different objectives. Multi-stage cluster sampling provides the general structure to achieve a multi-support assessment, and the flexibility to target different objectives at different stages of the design. We describe the implementation of two-stage cluster sampling for the initial phase of the NLCD 2001 assessment, and identify gaps in existing knowledge where research is needed to allow full implementation of a multi-objective, multi-support assessment. ?? 2008 American Society for Photogrammetry and Remote Sensing.

Photogrammetric Engineering and Remote Sensing↗

The 3D Elevation Program and energy for the Nation

High-resolution light detection and ranging (lidar) data are used in energy infrastructure siting, design, permitting, construction, and monitoring to promote public safety through the reduction of risks. For example, lidar data are used to identify safe locations for energy infrastructure by analyzing terrain parameters and identifying and evaluating geologic hazards (for example, landslide and fault locations) and their potential public safety effects on the location or design of infrastructure. Increasingly, engineering companies and regulatory agencies are using lidar and other remote sensing techniques as an efficient method to collect accurate, comprehensive data while reducing risks to field personnel. The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) is collecting lidar data nationwide (interferometric synthetic aperture radar [IfSAR] data in Alaska) to support a wide range of applications, including projects related to energy infrastructure construction and safety. Renewable energy resources, resource mining, and oil and gas resources were identified by the National Enhanced Elevation Assessment as business uses requiring three-dimensional (3D) elevation data. Elevation data are critical in assessing potential sites for energy infrastructure, such as pipelines, refineries and other facilities, to mitigate risks from natural hazards. For example, the Federal Energy Regulatory Commission (FERC), an independent agency that regulates the interstate transmission of electricity, natural gas, and oil, uses enhanced elevation data to conduct National Environmental Policy Act (NEPA) compliance assessments. The acquisition of high-resolution lidar data by the USGS 3DEP initiative helps the FERC and NEPA permit applicants by providing accurate and consistent data for hazards analysis. The use of these data accelerates the application and review process and avoids the much higher costs of acquiring elevation data along proposed energy facility locations and pipeline corridors.

Fact Sheet↗

Cloud-native repositories for big scientific data

Scientific data have traditionally been distributed via downloads from data server to local computer. This way of working suffers from limitations as scientific datasets grow toward the petabyte scale. A “cloud-native data repository,” as defined in this article, offers several advantages over traditional data repositories—performance, reliability, cost-effectiveness, collaboration, reproducibility, creativity, downstream impacts, and access and inclusion. These objectives motivate a set of best practices for cloud-native data repositories: analysis-ready data, cloud-optimized (ARCO) formats, and loose coupling with data-proximate computing. The Pangeo Project has developed a prototype implementation of these principles by using open-source scientific Python tools. By providing an ARCO data catalog together with on-demand, scalable distributed computing, Pangeo enables users to process big data at rates exceeding 10 GB/s. Several challenges must be resolved in order to realize cloud computing’s full potential for scientific research, such as organizing funding, training users, and enforcing data privacy requirements.

Computing in Science and Engineering↗

Orientation dependence of probabilistic seismic hazard estimates from CyberShake physics-based simulations

Earthquake ground‐motion intensities, such as pseudospectral accelerations (SAs), can vary significantly with horizontal orientation. However, conducting probabilistic seismic hazard analysis (PSHA) for each horizontal orientation is challenging because current ground‐motion models used in PSHA consider only a single horizontal intensity value, usually the median across all orientations, known as RotD50. To address this limitation, we employ physics‐based simulations for PSHA, which contain full waveforms from which ground‐motion intensities can be computed for all horizontal orientations to study directional seismic hazard. We apply our approach to the latest CyberShake study of the Greater Los Angeles metropolitan area, developed by the Statewide California Earthquake Center, finding that seismic hazard at a 2475‐yr return period, a common value used for earthquake‐resistant design, varies significantly with horizontal orientation. For instance, for SAs at 3 s, the maximum seismic hazard across all horizontal orientations is, on average, 15% higher than the median RotD50 hazard, with these differences becoming more pronounced at longer periods. These observed variations can generally be attributed to physical mechanisms that polarize seismic waves, such as the radiation pattern of the earthquake source and the influence of the subsurface structure. These results may have important implications for earthquake engineering applications, particularly for long‐period structures in areas with substantial horizontal variations in seismic hazard.

California↗

Map projections for global and continental data sets and an analysis of pixel distortion caused by reprojection

In global change studies the effects of map projection properties on data quality are apparent, and the choice of projection is significant. To aid compilers of global and continental data sets, six equal-area projections were chosen: the interrupted Goode Homolosine, the interrupted Mollweide, the Wagner IV, and the Wagner VII for global maps; the Lambert Azimuthal Equal-Area for hemisphere maps; and the Oblated Equal-Area and the Lambert Azimuthal Equal-Area for continental maps. Distortions in small-scale maps caused by reprojection, and the additional distortions incurred when reprojecting raster images, were quantified and graphically depicted. For raster images, the errors caused by the usual resampling methods (pixel brightness level interpolation) were responsible for much of the additional error where the local resolution and scale change were the greatest.

Photogrammetric Engineering and Remote Sensing↗

Update of the Graizer-Kalkan ground-motion prediction equations for shallow crustal continental earthquakes

A ground-motion prediction equation (GMPE) for computing medians and standard deviations of peak ground acceleration and 5-percent damped pseudo spectral acceleration response ordinates of maximum horizontal component of randomly oriented ground motions was developed by Graizer and Kalkan (2007, 2009) to be used for seismic hazard analyses and engineering applications. This GMPE was derived from the greatly expanded Next Generation of Attenuation (NGA)-West1 database. In this study, Graizer and Kalkan&rsquo;s GMPE is revised to include (1) an anelastic attenuation term as a function of quality factor (Q0) in order to capture regional differences in large-distance attenuation and (2) a new frequency-dependent sedimentary-basin scaling term as a function of depth to the 1.5-km/s shear-wave velocity isosurface to improve ground-motion predictions for sites on deep sedimentary basins. The new model (GK15), developed to be simple, is applicable to the western United States and other regions with shallow continental crust in active tectonic environments and may be used for earthquakes with moment magnitudes 5.0&ndash;8.0, distances 0&ndash;250 km, average shear-wave velocities 200&ndash;1,300 m/s, and spectral periods 0.01&ndash;5 s. Directivity effects are not explicitly modeled but are included through the variability of the data. Our aleatory variability model captures inter-event variability, which decreases with magnitude and increases with distance. The mixed-effects residuals analysis shows that the GK15 reveals no trend with respect to the independent parameters. The GK15 is a significant improvement over Graizer and Kalkan (2007, 2009), and provides a demonstrable, reliable description of ground-motion amplitudes recorded from shallow crustal earthquakes in active tectonic regions over a wide range of magnitudes, distances, and site conditions.

Open-File Report↗

Hydrogeology and gain/loss assessment of two lakes contaminated with per- and polyfluoroalkyl substances, vicinity of Joint Base McGuire-Dix-Lakehurst, New Jersey, 2020–21

Per- and polyfluoroalkyl substances (PFAS) have been identified in two lakes near Joint Base McGuire-Dix-Lakehurst (JBMDL) in New Jersey—Little Pine Lake in Pemberton Township and Pine Lake in Manchester Township. The streams that enter these lakes begin in or near JBMDL where sources of PFAS contamination are located. The U.S. Geological Survey, in cooperation with the U.S. Air Force Civil Engineer Center, performed a study of the hydrogeology and the gaining or losing conditions associated with these lakes. Hydrogeologic characteristics in the vicinity of both lakes were assessed using qualitative vertical hydraulic profiling of the subsurface. Groundwater was pumped from test intervals at various depths below land surface, then groundwater levels were measured until they recovered to static conditions. Low permeability aquifer intervals were identified within the aquifer underlying both lakes, consistent with silty and (or) clayey subunits of the Kirkwood-Cohansey aquifer system indicated on geophysical and lithologic logs. Gaining or losing conditions between groundwater and lake surface water were assessed with continuous monitoring of water levels and temperature in the lakes and in three piezometers per lake screened at different depths in the underlying aquifer from August 2020 through May 2021. At Little Pine Lake, surface water levels were consistently lower than groundwater levels, which is indicative of a gaining condition with groundwater flowing into the lake. Gaining conditions also support the lack of diurnal temperature fluctuations observed in groundwater, but poor response of surface-water temperature prevents complete analysis. The potential for losing conditions at other locations around Little Pine Lake necessitates further assessment in regard to possible PFAS contamination of groundwater in the underlying aquifer. Temperature results were inconclusive at Pine Lake, but surface water levels were consistently higher than groundwater levels throughout the monitoring period, which indicates a losing condition with lake water flowing into the underlying aquifer. Because of the downward vertical hydraulic gradient identified at Pine Lake, there is a strong possibility that PFAS in the lake water has also contaminated groundwater in its vicinity.

New Jersey↗

An empirical approach to inversion of an unconventional helicopter electromagnetic dataset

A helicopter electromagnetic (HEM) survey acquired at the U.S. Idaho National Engineering and Environmental Laboratory (INEEL) used a modification of a traditional mining airborne method flown at low levels for detailed characterization of shallow waste sites. The low sensor height, used to increase resolution, invalidates standard assumptions used in processing HEM data. Although the survey design strategy was sound, traditional interpretation techniques, routinely used in industry, proved ineffective. Processed data and apparent resistivity maps were severely distorted, and hence unusable, due to low flight height effects, high magnetic permeability of the basalt host, and the conductive, three-dimensional nature of the waste site targets.To accommodate these interpretation challenges, we modified a one-dimensional inversion routine to include a linear term in the objective function that allows for the magnetic and three-dimensional electromagnetic responses in the in-phase data. Although somewhat ad hoc, the use of this term in the inverse routine, referred to as the shift factor, was successful in defining the waste sites and reducing noise due to the low flight height and magnetic characteristics of the host rock. Many inversion scenarios were applied to the data and careful analysis was necessary to determine the parameters appropriate for interpretation, hence the approach was empirical. Data from three areas were processed with this scheme to highlight different interpretational aspects of the method. Wastes sites were delineated with the shift terms in two of the areas, allowing for separation of the anthropomorphic targets from the natural one-dimensional host. In the third area, the estimated resistivity and the shift factor were used for geological mapping. The high magnetic content of the native soil enabled the mapping of disturbed soil with the shift term. Published by Elsevier Science B.V.

Journal of Applied Geophysics↗

An analysis of potential water availability from the Atwood, Leesville, and Tappan Lakes in the Muskingum River Watershed, Ohio

This report presents the results of a study to assess potential water availability from the Atwood, Leesville, and Tappan Lakes, located within the Muskingum River Watershed, Ohio. The assessment was based on the criterion that water withdrawals should not appreciably affect maintenance of recreation-season pool levels in current use. To facilitate and simplify the assessment, it was assumed that historical lake operations were successful in maintaining seasonal pool levels, and that any discharges from lakes constituted either water that was discharged to prevent exceeding seasonal pool levels or discharges intended to meet minimum in-stream flow targets downstream from the lakes. It further was assumed that the volume of water discharged in excess of the minimum in-stream flow target is available for use without negatively impacting seasonal pool levels or downstream water uses and that all or part of it is subject to withdrawal. Historical daily outflow data for the lakes were used to determine the quantity of water that potentially could be withdrawn and the resulting quantity of water that would flow downstream (referred to as “flow-by”) on a daily basis as a function of all combinations of three hypothetical target minimum flow-by amounts (1, 2, and 3 times current minimum in-stream flow targets) and three pumping capacities (1, 2, and 3 million gallons per day). Using both U.S. Geological Survey streamgage data and lake-outflow data provided by the U.S. Army Corps of Engineers resulted in analytical periods ranging from 51 calendar years for the Atwood Lake to 73 calendar years for the Leesville and Tappan Lakes. The observed outflow time series and the computed time series of daily flow-by amounts and potential withdrawals were analyzed to compute and report order statistics (95th, 75th, 50th, 25th, 10th, and 5th percentiles) and means for the analytical period, in aggregate, and broken down by calendar month. In addition, surplus-water mass curve data were tabulated for each of the lakes. Monthly order statistics of computed withdrawals indicated that, for the three pumping capacities considered, increasing the target minimum flow-by amount tended to reduce the amount of water that can be withdrawn. The reduction was greatest in the lower percentiles of withdrawal; however, increasing the flow-by amount had no impact on potential withdrawals during high flow. In addition, for a given target minimum flow-by amount, increasing the pumping rate increased the total amount of water that could be withdrawn; however, that increase was less than a direct multiple of the increase in pumping rate for most flow statistics. Potential monthly withdrawals were observed to be more variable and more limited in some calendar months than others. Monthly order statistics and means of computed daily mean flow-by amounts indicated that flow-by amounts generally tended to be lowest during June–October and February. Increasing the target minimum flow-by amount for a given pumping rate resulted in some small increases in the magnitudes of the mean and 50th percentile and lower order statistics of computed mean flow-by, but had no effect on the magnitudes of the higher percentile statistics. Increasing the pumping rate for a given target minimum flow-by amount resulted in decreases in magnitudes of higher-percentile flow-by statistics by an amount equal to the flow equivalent of the increase in pumping rate; however, some lower percentile statistics remained unchanged.

Ohio↗

Surrogate analysis and index developer (SAID) tool and real-time data dissemination utilities

The use of acoustic and other parameters as surrogates for suspended-sediment concentrations (SSC) in rivers has been successful in multiple applications across the Nation. Critical to advancing the operational use of surrogates are tools to process and evaluate the data along with the subsequent development of regression models from which real-time sediment concentrations can be made available to the public. Recent developments in both areas are having an immediate impact on surrogate research, and on surrogate monitoring sites currently in operation. The Surrogate Analysis and Index Developer (SAID) standalone tool, under development by the U.S. Geological Survey (USGS), assists in the creation of regression models that relate response and explanatory variables by providing visual and quantitative diagnostics to the user. SAID also processes acoustic parameters to be used as explanatory variables for suspended-sediment concentrations. The sediment acoustic method utilizes acoustic parameters from fixed-mount stationary equipment. The background theory and method used by the tool have been described in recent publications, and the tool also serves to support sediment-acoustic-index methods being drafted by the multi-agency Sediment Acoustic Leadership Team (SALT), and other surrogate guidelines like USGS Techniques and Methods 3-C4 for turbidity and SSC. The regression models in SAID can be used in utilities that have been developed to work with the USGS National Water Information System (NWIS) and for the USGS National Real-Time Water Quality (NRTWQ) Web site. The real-time dissemination of predicted SSC and prediction intervals for each time step has substantial potential to improve understanding of sediment-related water-quality and associated engineering and ecological management decisions.

Conference Paper↗

Evaluating the use of video cameras to estimate bridge scour potential at four bridges in southwestern Montana

The U.S. Geological Survey, in cooperation with the Montana Department of Transportation, installed cameras and large-scale particle image velocimetry (LSPIV) recording equipment at four sites where the U.S. Geological Survey and Montana Department of Transportation are monitoring bridge scour using other methods. Determination of stream velocities is an important component of hydraulic engineering, river ecology, and fluvial geomorphology. LSPIV is an emerging technique that can be used to estimate stream surface velocities and streamflow using video cameras. Video from the camera is referenced to known locations on streambanks, and postprocessed using computer software that calculates water surface velocity and flow direction between video frames. The goal of the study was to determine if LSPIV can increase the accuracy of current bridge scour prediction methods using video recordings from 2019 to 2021. Scour around piers is one of the primary failure mechanisms for bridges and poses threats to public safety and interstate commerce. LSPIV installations can capture the flow velocities and directions near bridge piers where other measurement methods might fail or be too dangerous. Additional benefits to the LSPIV technique were continuous data collection throughout the hydrologic cycle and enhanced safety of the methods for estimating velocity magnitude and direction during flood events. Limitations of the LSPIV technique included the angle of the camera to incoming flow; video recordings that were not usable because of ice cover, night, or high winds; and vegetation along the streambank that interfered with water flow analysis. Future applications of the LSPIV technique may continue to improve the processing of the video and reduce limitations for this process.

Montana↗

High-resolution delineation of chlorinated volatile organic compounds in a dipping, fractured mudstone: depth- and strata-dependent spatial variability from rock-core sampling

Synthesis of rock-core sampling and chlorinated volatile organic compound (CVOC) analysis at five coreholes, with hydraulic and water-quality monitoring and a detailed hydrogeologic framework, was used to characterize the fine-scale distribution of CVOCs in dipping, fractured mudstones of the Lockatong Formation of Triassic age, of the Newark Basin in West Trenton, New Jersey. From these results, a refined conceptual model for more than 55 years of migration of CVOCs and depth- and strata-dependent rock-matrix contamination was developed. Industrial use of trichloroethene (TCE) at the former Naval Air Warfare Center (NAWC) from 1953 to 1995 resulted in dense non-aqueous phase liquid (DNAPL) TCE and dissolved TCE and related breakdown products, including other CVOCs, in underlying mudstones. Shallow highly weathered and fractured strata overlie unweathered, gently dipping, fractured strata that become progressively less fractured with depth. The unweathered lithology includes black highly fractured (fissile) carbon-rich strata, gray mildly fractured thinly layered (laminated) strata, and light-gray weakly fractured massive strata. CVOC concentrations in water samples pumped from the shallow weathered and highly fractured strata remain elevated near residual DNAPL TCE, but dilution by uncontaminated recharge, and other natural and engineered attenuation processes, have substantially reduced concentrations along flow paths removed from sources and residual DNAPL. CVOCs also were detected in most rock-core samples in source areas in shallow wells. In many locations, lower aqueous concentrations, compared to rock core concentrations, suggest that CVOCs are presently back-diffusing from the rock matrix. Below the weathered and highly fractured strata, and to depths of at least 50 meters (m), groundwater flow and contaminant transport is primarily in bedding-plane-oriented fractures in thin fissile high-carbon strata, and in fractured, laminated strata of the gently dipping mudstones. Despite more than 18 years of pump and treat (P&T) remediation, and natural attenuation processes, CVOC concentrations in aqueous samples pumped from these deeper strata remain elevated in isolated intervals. DNAPL was detected in one borehole during coring at a depth of 27 m. In contrast to core samples from the weathered zone, concentrations in core samples from deeper unweathered and unfractured strata are typically below detection. However, high CVOC concentrations were found in isolated samples from fissile black carbon-rich strata and fractured gray laminated strata. Aqueous-phase concentrations were correspondingly high in samples pumped from these strata via short-interval wells or packer-isolated zones in long boreholes. A refined conceptual site model considers that prior to P&T remediation groundwater flow was primarily subhorizontal in the higher-permeability near surface strata, and the bulk of contaminant mass was shallow. CVOCs diffused into these fractured and weathered mudstones. DNAPL and high concentrations of CVOCs migrated slowly down in deeper unweathered strata, primarily along isolated dipping bedding-plane fractures. After P&T began in 1995, using wells open to both shallow and deep strata, downward transport of dissolved CVOCs accelerated. Diffusion of TCE and other CVOCs from deeper fractures penetrated only a few centimeters into the unweathered rock matrix, likely due to sorption of CVOCs on rock organic carbon. Remediation in the deep, unweathered strata may benefit from the relatively limited migration of CVOCs into the rock matrix. Synthesis of rock core sampling from closely spaced boreholes with geophysical logging and hydraulic testing improves understanding of the controls on CVOC delineation and informs remediation design and monitoring.

New Jersey, New York, Pennsylvania↗

The Ecology of Parasite-Host Interactions at Montezuma Well National Monument, Arizona - Appreciating the Importance of Parasites

Although parasites play important ecological roles through the direct interactions they have with their hosts, historically that fact has been underappreciated. Today, scientists have a growing appreciation of the scope of such impacts. Parasites have been reported to dominate food webs, alter predator-prey relationships, act as ecosystem engineers, and alter community structure. In spite of this growing awareness in the scientific community, parasites are still often neglected in the consideration of the management and conservation of resources and ecosystems. Given that at least half of the organisms on earth are probably parasitic, it should be evident that the ecological functions of parasites warrant greater attention. In this report, we explore different aspects of parasite-host relationships found at a desert spring pond within Montezuma Well National Monument, Arizona. In three separate but related chapters, we explore interactions between a novel amphipod host and two parasites. First, we identify how host behavior responds to this association and how this association affects interactions with both invertebrate non-host predators and a vertebrate host predator. Second, we look at the human dimension, investigating how human recreation can indirectly affect patterns of disease by altering patterns of vertebrate host space use. Finally - because parasites and diseases are of increasing importance in the management of wildlife species, especially those that are imperiled or of management concern - the third chapter argues that research would benefit from increased attention to the statistical analysis of wildlife disease studies. This report also explores issues of statistical parasitology, providing information that may better inform those designing research projects and analyzing data from studies of wildlife disease. In investigating the nature of parasite-host interactions, the role that relationships play in ecological communities, and how human activities alter these associations, scientists usually make inferences by methods of statistical hypotheses testing. This type of hypothesis testing places additional importance on the analysis and interpretation of parasite-host interactions. We address these ideas in this report, focusing on the following questions: (1) How do two parasites with complex life cycles alter the behavior of a novel amphipod host, and how do host and non-host predators respond to infected amphipod prey? (2) Does human recreation affect spatial patterns of infection in an otherwise natural ecosystem? (3) How is hypothesis-testing applied in studies of wildlife disease? (4) What conclusions can we make about the relative usefulness of these methodologies? and (5) How can the analysis and interpretation of wildlife disease studies be improved? Each chapter of this report contains its own literature-cited section, with tables included in appendixes at the end of the full report.

Open-File Report↗

High-frequency filtering of strong-motion records

The influence of noise in strong-motion records is most problematic at low and high frequencies where the signal to noise ratio is commonly low compared to that in the mid-spectrum. The impact of low-frequency noise (<1 Hz) on strong-motion intensity parameters such as ground velocities, displacements and response spectral ordinates can be dramatic and consequentially it has become standard practice to low-cut (high-pass) filter strong-motion data with corner frequencies often chosen based on the shape of Fourier amplitude spectra and the signal-to-noise ratio. It has been shown that response spectral ordinates should not be used beyond some fraction of the corner period (reciprocal of the corner frequency) of the low-cut filter. This article examines the effect of high-frequency noise (>5 Hz) on computed pseudo-absolute response spectral accelerations (PSAs). In contrast to the case of low-frequency noise our analysis shows that filtering to remove high-frequency noise is only necessary in certain situations and that PSAs can often be used up to 100 Hz even if much lower high-cut corner frequencies are required to remove the noise. This apparent contradiction can be explained by the fact that PSAs are often controlled by ground accelerations associated with much lower frequencies than the natural frequency of the oscillator because path and site attenuation (often modelled by Q and κ, respectively) have removed the highest frequencies. We demonstrate that if high-cut filters are to be used, then their corner frequencies should be selected on an individual basis, as has been done in a few recent studies.

Bulletin of Earthquake Engineering↗