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At least 865 records · Page 48Linked to original sources

A new Rosalina (foraminifera) parasitic on a bivalve

In a collection of pelecypods from deep water off the west coast of Africa, several specimens of a new species of the foraminifer, Rosalina , are attached to the umbonal area of the bivalve. In addition, numerous attachment scars are observed on the exterior surface with interconnected penetration scars on the interior surface of the valves. It is speculated that the foraminifer made the partial or complete penetration of the clam shell in connection with its search for calcium carbonate for shell-building. From the nature of the scars on the interior of the valves, it is clear that the clam was alive, because there are mounded up shell deposits around some of the openings and others are completely sealed shut by shell material deposited by the clam.

Deep-Sea Research and Oceanographic Abstracts↗

Impacts of acute and chronic suspended solids exposure on juvenile freshwater mussels

Construction activities may affect adjacent water systems by introducing increased levels of suspended solids into the water body and may subsequently affect the survival and growth of freshwater mussels. We tested three sediment types from sites in Missouri, including Spring River sediment (SRS), Osage River bank clay soil (ORC), and quarried limestone from Columbia (LMT). We prepared series of suspensions of each sediment with total suspended solids concentrations ranging from 0 to 5000 mg/L. Juveniles from three mussel species, Fatmucket ( Lampsilis siliquoidea ), Arkansas Brokenray ( Lampsilis reeveiana ), and Washboard ( Megalonaias nervosa ) were exposed to these suspensions in both acute (96-h) and chronic (28-d) tests. No clear impact on survival was observed from the acute or chronic exposures, but chronic test showed that juvenile mussels' growth was strongly affected. Interestingly, growth was enhanced at lower levels of SRS and ORC (≤500 mg/L, p < 0.05), and the juvenile mussels exposed to 500 mg/L SRS exhibited approximately 60 % more dry weight than those reared in the control. LMT did not enhance growth. Growth was slowed by high concentrations (>1000 mg/L) of all three sediments, implying that high suspended solids levels could reduce survival in the long term. Our findings may help to inform regulations and guidelines for construction activities to minimize adverse effects on juvenile mussels.

Science of the Total Environment↗

The use of Schlumberger and equatorial soundings in groundwater investigations near El Paso, Texas

Electrical soundings using the symmetric AMNB Schlumberger and the bipole-dipole equatorial arrays were made along two profiles near El Paso, Texas, in support of a groundwater exploration program which included seismic refraction and gravity surveys. Electrode spacings (AB/2 or R) reaching 12,000 ft allowed exploration to depths of about 7000 ft. Geoelectrical information on the subsurface materials was augmented by sounding with the bilateral equatorial configuration and by transforming Schlumberger curves into dipole-polar sounding curves with formulas developed by Al'pin and by Tsekov. The bilateral equatorial sounding curves were found useful for detecting the direction of dip of highly resistive bedrocks whereas transformed sounding curves were used to evaluate the average longitudinal resistivity, and hence the depth, to the "electric basement." A few of the Schlumberger sounding curves were either clearly or subtly distorted by nonhorizontal geologic structures. The interpretation of these sounding curves illustrates the requirement for careful analysis in processing electrical prospecting data obtained over complex geologic conditions. The interpretation of a combined Schlumberger-equatorial sounding curve, which did not agree with the preliminary interpretation of seismic refraction data, was confirmed to be correct by data from a test well drilled to a depth of 4363 ft. The application of electrical sounding data in the El Paso area furnished valuable information on the depth to fresh-water-saltwater interfaces and on the depth to highly resistive impervious bedrocks.

Texas↗

The use (and misuse) of sediment traps in coral reef environments: Theory, observations, and suggested protocols

Sediment traps are commonly used as standard tools for monitoring “sedimentation” in coral reef environments. In much of the literature where sediment traps were used to measure the effects of “sedimentation” on corals, it is clear from deployment descriptions and interpretations of the resulting data that information derived from sediment traps has frequently been misinterpreted or misapplied. Despite their widespread use in this setting, sediment traps do not provide quantitative information about “sedimentation” on coral surfaces. Traps can provide useful information about the relative magnitude of sediment dynamics if trap deployment standards are used. This conclusion is based first on a brief review of the state of knowledge of sediment trap dynamics, which has primarily focused on traps deployed high above the seabed in relatively deep water, followed by our understanding of near-bed sediment dynamics in shallow-water environments that characterize coral reefs. This overview is followed by the first synthesis of near-bed sediment trap data collected with concurrent hydrodynamic information in coral reef environments. This collective information is utilized to develop nine protocols for using sediment traps in coral reef environments, which focus on trap parameters that researchers can control such as trap height (H), trap mouth diameter (D), the height of the trap mouth above the substrate (z o ), and the spacing between traps. The hydrodynamic behavior of sediment traps and the limitations of data derived from these traps should be forefront when interpreting sediment trap data to infer sediment transport processes in coral reef environments.

Coral Reefs↗

Colonial waterbird predation on Lost River and shortnose suckers based on recoveries of passive integrated transponder tags

We evaluated predation on Lost River suckers ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ), both listed under the Endangered Species Act (ESA), from American white pelicans ( Pelecanus erythrorhynchos ) and double-crested cormorants ( Phalacrocorax auritus ) nesting at mixed species colonies on Clear Lake Reservoir, CA and Upper Klamath Lake, OR during 2009-2014. Predation was evaluated by recovering passive integrated transponder (PIT) tags that were implanted in suckers, subsequently consumed by pelicans or cormorants, and deposited on the birds&rsquo; nesting colonies. Data from PIT tag recoveries were used to estimate predation rates (proportion of available tagged suckers consumed) by birds to evaluate the relative susceptibility of suckers to avian predation in Upper Klamath Basin. Data on the size of pelican and cormorant colonies (number of breeding adults) at Clear Lake and Upper Klamath Lake were also collected and reported in the context of predation on suckers. Results indicate that predation rates varied by sucker species (Lost River, shortnose), sucker age-class (adult, juvenile), bird colony location (Upper Klamath Lake, Clear Lake), and year (2009-2014), demonstrating that predator-prey interactions in the system were dynamic during the study period. Tagged suckers ranging from 72 mm to 730 mm were susceptible to cormorant or pelican predation; all but the largest of the tagged Lost River suckers were susceptible to avian predation. Estimates of minimum, annual predation rates ranged from <0.1% to 4.6% of the available Lost River suckers and from <0.1% to 4.2% of the available shortnose suckers during the study period. Of the two colony locations evaluated, predation rates on suckers in Clear Lake were generally higher by birds nesting at mixed-species colonies on Clear Lake. Birds nesting on Clear Lake also commuted over 75 kilometers to forage on suckers in Upper Klamath Lake. Conversely, there was no evidence that birds nesting in Upper Klamath Lake foraged on tagged suckers in Clear Lake. Although sample sizes of tagged juvenile suckers were small and limited to fish tagged in Upper Klamath Lake, there was evidence that bird predation on juvenile suckers was higher than on adult suckers, with annual predate rate estimates on juvenile suckers ranging from 5.7% to 8.4% of available fish. The minimum annual predation rates presented here suggests that avian predation may be a factor limiting recovery of populations of Lost River and shortnose suckers, particularly juvenile suckers in Upper Klamath Lake and adult suckers in Clear Lake. Additional research is needed, however, to better assess the impacts of avian predation on sucker populations by (1) recovering PIT tags in a manner so that the species of avian predator is known (i.e., pelican vs. cormorant), (2) measuring predator-specific PIT tag deposition probabilities at each colony, (3) increasing the sample of juvenile suckers in the population that are PIT-tagged, and (4) recovering sufficient sample sizes of PIT tags on bird colonies to describe how various biotic and abiotic factors (e.g., fish size and condition, water levels and quality, and other factors) contribute to sucker susceptibility to avian predation in the Upper Klamath Basin.

California, Oregon↗

Rock-weathering rates as functions of time

The scarcity of documented numerical relations between rock weathering and time has led to a common assumption that rates of weathering are linear. This assumption has been strengthened by studies that have calculated long-term average rates. However, little theoretical or empirical evidence exists to support linear rates for most chemical-weathering processes, with the exception of congruent dissolution processes. The few previous studies of rock-weathering rates that contain quantitative documentation of the relation between chemical weathering and time suggest that the rates of most weathering processes decrease with time. Recent studies of weathering rinds on basaltic and andesitic stones in glacial deposits in the western United States also clearly demonstrate that rock-weathering processes slow with time. Some weathering processes appear to conform to exponential functions of time, such as the square-root time function for hydration of volcanic glass, which conforms to the theoretical predictions of diffusion kinetics. However, weathering of mineralogically heterogeneous rocks involves complex physical and chemical processes that generally can be expressed only empirically, commonly by way of logarithmic time functions. Incongruent dissolution and other weathering processes produce residues, which are commonly used as measures of weathering. These residues appear to slow movement of water to unaltered material and impede chemical transport away from it. If weathering residues impede weathering processes then rates of weathering and rates of residue production are inversely proportional to some function of the residue thickness. This results in simple mathematical analogs for weathering that imply nonlinear time functions. The rate of weathering becomes constant only when an equilibrium thickness of the residue is reached. Because weathering residues are relatively stable chemically, and because physical removal of residues below the ground surface is slight, many weathering features require considerable time to reach constant rates of change. For weathering rinds on volcanic stones in the western United States, this time is at least 0.5 my.

Quaternary Research↗

Hydrologically induced deformation in Long Valley Caldera and adjacent Sierra Nevada

Vertical and horizontal components of GNSS displacements in the Long Valley Caldera and adjacent Sierra Nevada range show a clear correlation with hydrological trends at both multiyear and seasonal time scales. We observe a clear vertical and horizontal seasonal deformation pattern primarily attributable to the solid earth response to hydrological surface loading at large-to-regional (Sierra Nevada range) scales. Several GNSS sites, located at the eastern edge of the Sierra Nevada along the southwestern rim of Long Valley Caldera, also show significant horizontal deformation that cannot be explained by elastic deformation from surface loading. Due to the location of these sites and the strong correlation between their horizontal displacements and spring discharge, we hypothesize that this deformation reflects poroelastic processes related to snowmelt runoff water infiltrating into the Sierra Nevada slopes around Long Valley Caldera. Interestingly, this is also an area where water infiltrates to feed the local hydrothermal system, and where snowmelt-induced earthquake swarms have been recently detected.

California, Nevada↗

Temporal variations of Escherichia coli concentrations in a large Midwestern river

The Raccoon River used by the Des Moines Water Works to serve more than 400,000 people in central Iowa is threatened by contamination from Escherichia coli bacteria from point and nonpoint sources. The 9389 km2 watershed is highly agricultural, with 73% of the land in row crop production and widespread animal production. Results from 2155 grab samples from 1997 to 2005 for E. coli analysis were examined for temporal variations. E. coli concentrations were found to vary across years, seasons, and flow conditions, with a 9-year mean value of 1156 most probable number (MPN)/100 ml. Monthly concentrations exhibited clear seasonality with highest values in May through July. Although E. coli concentrations were higher during periods of greater discharge, the relation of log E. coli to log discharge was not particularly strong (r2 = 0.35). The variogram of E. coli concentrations showed temporal correlation within a span of 4 days suggesting that concentrations measured on 1 day may be related in time to concentrations measured up to 3 days later and beyond 4 days the concentrations vary randomly. The spectral analysis of the time series of E. coli was also carried out and was fitted well with the spectrum of an exponential covariance function. Deciphering temporal patterns and correlation of E. coli bacteria in streams may be useful for developing future monitoring strategies to track concentration patterns and loads. ?? 2008 Elsevier B.V. All rights reserved.

Journal of Hydrology↗

Selective transport of hydrocarbons in the unsaturated zone due to aqueous and vapor phase partitioning

Long-term groundwater contamination can result from vapors and solutes emanating from organic liquids spilled in the unsaturated zone. The mathematical modeling analysis presented in this paper demonstrates for gasoline-range hydrocarbons, and other volatile organics commonly spilled, that diffusive transport in the unsaturated zone is a significant transport mechanism which can cause aqueous and vapor plumes to spread away from the immiscible liquid source, resulting in increasing groundwater contaminating potential. An analytical solution to a one-dimensional version of the transport model allows for the definition of a retardation coefficient which is dependent on phase-partitioning coefficients and moisture content. Significant differences in migration rates should be anticipated between hydrocarbons. A numerical solution was developed for a radially symmetric version of the model defining transport for a multiconstituent contaminant like gasoline. Differences in anticipated migration rates between aromatic and nonaromatic hydrocarbons was clearly demonstrated. A simulation based on the composition of an actual gasoline revealed that aromatic constituents, although constituting a fraction of the initial gasoline composition, completely defined the groundwater contaminating potential. This potential changes in time as constituents are selectively removed from the unsaturated zone. Further, the groundwater contaminating potential is quite sensitive to the ground surface boundary characterization.

Water Resources Research↗

Characterizing seasonal and diel vertical movement and habitat use of lake whitefish (Coregonus clupeaformis) in Clear Lake, Maine

Seasonal and daily vertical activity of lake whitefish Coregonus clupeaformis was studied in Clear Lake, Maine (253 ha), using acoustic telemetry from November 2004 to June 2009. Twenty adult lake whitefish were tagged with acoustic tags that had either a depth sensor or both depth and temperature sensors to assess vertical habitat use at a seasonal and daily resolution. Vertical habitat selection varied seasonally and was strongly influenced by temperature. Between December and April, when the lake was covered with ice, surface temperature was below 2&deg;C and tagged individuals occupied deep areas of the lake (&sim;15 m). After ice-out, fish ascended into shallow waters (&sim;5 m), responding to increased water temperature and possibly to greater foraging opportunity. When surface water temperatures exceeded 20&deg;C, fish descended below the developing thermocline (&sim;9 m), where they remained until surface temperatures fell below 20&deg;C; fish then ascended into shallower depths, presumably for feeding and spawning. Through the winter, fish remained in thermal habitats that were warmer than the surface temperatures; in the summer, they selected depths with thermal habitats below 15&deg;C. Though the amplitude varied greatly across seasons, lake whitefish displayed a strong diurnal pattern of activity as measured by vertical velocities. Fish were twofold more active during spring, summer, and fall than during winter. Lake whitefish exhibited diel vertical migrations, rising in the water column during nighttime and occupying deeper waters during the day. This pattern was more pronounced in the spring and fall and far less prominent during winter and summer. The strong linkage between temperature and habitat use may limit the current range of lake whitefish and may be directly impacted by climatic change.

Main↗

Commissioned Review. Carbon: freshwater plants

δ13C values for freshwater aquatic plant matter varies from −11 to −50‰ and is not a clear indicator of photosynthetic pathway as in terrestrial plants. Several factors affect δ13C of aquatic plant matter. These include: (1) The δ13C signature of the source carbon has been observed to range from +1‰ for HCO3− derived from limestone to −30‰ for CO2 derived from respiration. (2) Some plants assimilate HCO3−, which is –7 to –11‰ less negative than CO2. (3) C3, C4, and CAM photosynthetic pathways are present in aquatic plants. (4) Diffusional resistances are orders of magnitude greater in the aquatic environment than in the aerial environment. The greater viscosity of water acts to reduce mixing of the carbon pool in the boundary layer with that of the bulk solution. In effect, many aquatic plants draw from a finite carbon pool, and as in terrestrial plants growing in a closed system, biochemical discrimination is reduced. In standing water, this factor results in most aquatic plants having a δ13C value similar to the source carbon. Using Farquhar's equation and other physiological data, it is possible to use δ13C values to evaluate various parameters affecting photosynthesis, such as limitations imposed by CO2 diffusion and carbon source.

Plant, Cell & Environment↗

Corrigendum to “Comparing activated alumina with indigenous laterite and bauxite as potential sorbents for removing fluoride from drinking water in Ghana” [Appl. Geochem. 56 (2015) 50–66]

The authors regret that the application of the t -plot to determine the presence of micropores in the three sorbents needs the following corrections: (1) Fig. 1a, c, e are N 2(g) adsorption and desorption isotherms” (remove “BET”). This correction applies to descriptions in the text as well. (2) Table 2, the column titled “Micropores” is mislabelled, and should be labelled “Film thickness”, which may not equal the pore width. The column titled “Micropore volume” is a correct description for laterite volume 0.0022 cm 3 g −1 ( t = 0.3–0.5 nm), but the other pore volumes listed cannot be identified as corresponding to micropores. They likely comprise both micropores and mesopores in laterite, while the presence of micropores in activated alumina is not clear. The positive y-intercept for the lowest linear portion of the laterite t -plot curve indicates micropores (Fig. 1f), and the shape of the t -plot curve suggests the presence of both micropores and mesopores. The shape of the activated alumina t -plot curve suggests the presence of micropores and mesopores, but the zero intercept for the lowest linear portion of the curve (Fig. 1b) creates uncertainty regarding the presence of micropores. Also see Storck et al., 1998; Hay et al. 2011 and references therein. (Additional note: analytical instrument Micromeritics ® was misspelled as “Micrometrics”). The authors would like to apologise for any inconvenience caused.

Applied Geochemistry↗

Trace elements in Corbicula fluminea from the San Joaquin River, California

(i) Trace element concentrations in soft tissue of the benthic bivalve, Corbicula fluminea, from the San Joaquin River and its major tributaries were examined during the primary irrigation season in relation to the spatial variation in concentrations of major, minor and trace constituents in riverwater and sediments. (ii) Selenium concentrations in Corbicula from perennial flow reaches of the San Joaquin River and its major tributaries varied directly with the solute (??? 0.45 ??m) Se concentrations of riverwater. Elevated concentrations occurred in clams from sites with substantial discharge originating as subsurface drainage and irrigation return flows. Both tissue and solute Se concentrations declined from June through the end of the primary irrigation season. (iii) Arsenic concentrations in Corbicula from perennial flow reaches of the San Joaquin River varied directly with the HNO3-extractable (pH 2) As:Fe ratio of suspended matter, providing evidence that sorption to oxyhydroxide surfaces is an important control on the biological availability of As. However, Corbicula from several tributaries draining alluvium derived from the Sierra Nevada had lower As concentrations than would be predicted by the relation developed for perennial flow sites of the San Joaquin River. Arsenic concentrations in Corbicula from the Tuolumne and Merced Rivers and upstream reaches of the San Joaquin River were higher than in clams from the downstream perennial flow reaches of the San Joaquin River. Concentrations of As in clams from downstream perennial flow reaches of the San Joaquin River increased from June through the end of the primary irrigation season. (iv) Mercury concentrations in Corbicula were elevated in upstream reaches of the San Joaquin River, in the Merced and Tuolumne Rivers, and in tributaries draining the Coast Ranges. Mean Cd and Cu concentrations in Corbicula were elevated in the Merced and Tuolumne Rivers, Orestimba Creek and a perennial flow reach of the San Joaquin River which receives water directly from the Delta Mendota Canal. Concentrations of Ni in clams from the San Joaquin River decreased downstream of the Delta Mendota Pool. (v) Boron and Mo were not accumulated by Corbicula despite high solute concentrations (means as high as 2960 ??g B l-1 and 9 ??g Mo l-1) in riverwater during the primary irrigation season. This bivalve may not be an appropriate bioindicator of B and Mo enrichment. Concentrations of Cr, Pb, Ag, V and Zn in Corbicula exhibited little geographic variability in the drainage. (vi) Regression analysis revealed no clear evidence of synergistic or antagonistic interactions among As, Cd, Cu, Hg, Ni and Se in their uptake by Corbicula.

Conference Paper↗

Globorotalia truncatulinoides (dextral) Mg/Ca as a proxy for Gulf of Mexico winter mixed-layer temperature: evidence from a sediment trap in the northern Gulf of Mexico

Three years of weekly- to biweekly-resolved sediment-trap data show that almost 90% of the total flux of tests of the planktic foraminifer Globorotalia truncatulinoides to sediments in the northern Gulf of Mexico occurs in January and February. Comparison of δ 18 O from tests of non-encrusted Gl. truncatulinoides in sediment-trap samples with calculated calcification depths indicates that the non-encrusted individuals secrete their test in the winter surface-mixed layer, most likely at the bottom of the surface mixed zone. Mg/Ca-temperature estimates from non-encrusted Gl. truncatulinoides in sediment-trap samples are consistent with observed temperatures at the calcification depths inferred from the δ 18 O data. In contrast, Mg/Ca-temperature estimates from encrusted Gl. truncatulinoides in sediment-trap samples indicate the crust is formed in cooler (deeper) waters. A preliminary study in a core recovered near the sediment-trap site demonstrates that non-encrusted and encrusted forms of Gl. truncatulinoides in sediment samples show a similar offset in Mg/Ca values as observed in sediment-trap samples. A short (~ 100 years) Mg/Ca record from non-encrusted Gl. truncatulinoides indicates a warming trend that coincides with a warming trend in mean-annual sea-surface temperature recorded by Mg/Ca in Globigerinoides ruber (white) from the same core. These findings suggest Mg/Ca from non-encrusted Gl. truncatulinoides has clear potential as a proxy for past winter mixed-layer temperature.

Marine Micropaleontology↗

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River—A synthesis of science, 2005 to 2012

This report is intended to synthesize the state of the scientific understanding of pallid sturgeon ecological requirements to provide recommendations for future science directions and context for Missouri River restoration and management decisions. Recruitment of pallid sturgeon has been low to non-existent throughout its range. Emerging understanding of the genetic structure of pallid sturgeon populations sets a broad framework for species and river management decisions, including decisions about managing the future genetic diversity of the species, but also decisions about where and what type of river restoration actions will be effective for subpopulations of this highly migratory species. Adult pallid sturgeon may migrate hundreds of kilometers (km) to spawn and their progeny may disperse even greater distances downstream as drifting free embryos. As a result of their complex life history pallid sturgeon naturally exploit a wide range of habitats during their life cycles. The construction of dams and reservoirs has fragmented habitats and may have shifted Missouri River subpopulations downstream. Research has not identified one primary biological or ecological constraint that appears to limit populations of the pallid sturgeon. With the present (2013) state of knowledge many life stages and life-stage transitions cannot be ruled out as contributing to recruitment failure. Biological opinions in 2000 (and amended in 2003) presented the dominant hypotheses for recruitment failure that existed at that time. Emphasis was on the role of the flow regime, specifically spring flow pulses (&ldquo;spring rises&rdquo;), to condition spawning substrate and cue reproductive aggregations and migrations, and on low flows and additional slow, shallow-water area to serve as rearing habitat for age-0 to juvenile pallid sturgeon. Studies on spawning habitat dynamics have documented that habitat patches selected for spawning by fish in the Lower Missouri River (Missouri River downstream from Gavins Point Dam to the confluence with the Mississippi River) are dominantly on outside, revetted bends in the deepest, fastest, and most turbulent water. Studies in more natural habitat on the Yellowstone River have documented spawning in convergent flow in the middle of the channel on discrete patches of gravel within a sand-dominated channel, an arrangement that may be more effective in attracting aggregations of reproductive fish compared to the nearly continuous revetment on the Lower Missouri River. Pallid sturgeon spawn in the spring and early summer during periods of increasing day length. Water temperature consistently exerts a threshold effect for spawning at 16&ndash;18 &deg;C. In addition, the role of water temperature is indicated by pauses and reversals in upstream migrations that have been associated with cold weather fronts that create a transient decrease in water temperature. From 2005 to 2012 on the Lower Missouri River, no obvious relations between flow pulses and fish movements and spawning behaviors have been apparent. However, pallid sturgeon tracking at the Upper Missouri&ndash;Yellowstone confluence indicates that in most years, most telemetered pallid sturgeon migrate out of the Missouri River and into the Yellowstone River in the June&ndash;July timeframe in association with the spring pulse. This pattern was disrupted in 2011 when a high flow pulse with warm temperatures and high turbidity emanated from the Milk River, followed by record releases from Fort Peck Dam, and 36&ndash;39 percent of the telemetered population migrated up the Upper Missouri. This result supports the hypothesis that sufficiently large flow pulses may trigger migration and aggregation but it is not clear that functional pulses are within reservoir management authorities. Notably, a pallid sturgeon free embryo was captured on the Upper Missouri River in 2011 and another single, genetically confirmed embryo was captured on the Yellowstone River in 2012. Research on free-embryo drift has indicated the potential for hundreds of miles of downstream dispersal. Lack of distance to accommodate the extended downstream dispersal period of free embryos on the Upper Missouri and Yellowstone Rivers is the predominant hypothesis for recruitment failure in the upper basin. Long drift distances in the Lower Missouri River may be responsible for shifting Lower Missouri River sub-populations further into the Middle Mississippi River. Physical understanding of drift processes indicates that mean velocities could be slowed through decreased discharges or increased channel hydraulic radius (width and topographic diversity) to reduce free-embryo dispersal distances. In addition, the probability that free embryos are transported into and retained in channel-margin habitats is theoretically amenable to channel re-engineering that would increase cross-channel secondary currents in bends or channel expansions. Considerable uncertainty persists, however, about whether extended drift of Lower Missouri River larvae is responsible for recruitment failure. If drift distance is limiting, it is important to discern whether it would be advisable to retain larvae within the Missouri River, and where along the river restoration projects should be placed to optimize survival and growth of age-0 and juvenile sturgeon. Longitudinal differences in female pallid sturgeon fecundity lend support to the hypothesis that recruitment failure may be due, in part, to fish having insufficient nutrition to produce the numbers of gametes needed for the population to grow, perhaps because of simultaneous declines in prey-fish populations and their habitats. Establishing a chain of causality from habitat decline, to prey-fish populations, to sturgeon diets, to sturgeon fecundity, and to pallid sturgeon population growth presents a considerable scientific challenge. In addition to the dominant hypotheses relating pallid sturgeon populations to changes in flow regime and channel morphology, other factors have been identified that might be sources of stress and contribute to recruitment failure. Among these are water quality and contaminants. Ambient water-quality monitoring on the Missouri River has demonstrated summer episodes when dissolved oxygen dips below 5 milligrams per liter, a threshold that may be stressful especially to age-0 and juvenile sturgeon. Documented cases of intersex in shovelnose and pallid sturgeon indicate that agricultural and municipal sources of endocrine disrupting chemicals also may have a role in pallid sturgeon recruitment failure. Scientific understanding of the ecological requirements of pallid sturgeon has increased almost exponentially in the last two decades, and efforts are now turning from understanding fundamental biology of the species to quantifying how population dynamics relate to potential management actions. Progress in developing the science needed to inform management actions on the Missouri River may benefit from continuation of monitoring of reproductive cycles, reproductive movements, growth, and survival of telemetry tagged adults, increased emphasis on focused, complementary field and laboratory studies of factors influencing early life history, implementation of studies to resolve the role of food limitations in growth, survival, and reproductive condition, and implementation of studies designed specifically to parameterize models linking management to populations.

Missouri River↗

Influence of a chlor-alkali superfund site on mercury bioaccumulation in periphyton and low-trophic level fauna

In Berlin, New Hampshire, USA, the Androscoggin River flows adjacent to a former chlor-alkali facility that is a US Environmental Protection Agency Superfund site and source of mercury (Hg) to the river. The present study was conducted to determine the fate and bioaccumulation of methylmercury (MeHg) to lower trophic-level taxa in the river. Surface sediment directly adjacent to the source showed significantly elevated MeHg (10&ndash;40&times; increase, mean&thinsp;&plusmn;&thinsp;standard deviation [SD]: 20.1&thinsp;&plusmn;&thinsp;24.8 ng g &ndash;1 dry wt) and total mercury (THg; 10&ndash;30&times; increase, mean&thinsp;&plusmn;&thinsp;SD: 2045&thinsp;&plusmn;&thinsp;2669 ng g &ndash;1 dry wt) compared with all other reaches, with sediment THg and MeHg from downstream reaches elevated (3&ndash;7&times; on average) relative to the reference (THg mean&thinsp;&plusmn;&thinsp;SD: 33.5&thinsp;&plusmn;&thinsp;9.33 ng g &ndash;1 dry wt; MeHg mean&thinsp;&plusmn;&thinsp;SD: 0.52&thinsp;&plusmn;&thinsp;0.21&thinsp;ng g &ndash;1 dry wt). Water column THg concentrations adjacent to the point source for both particulate (0.23&thinsp;ng L &ndash;1 ) and dissolved (0.76&thinsp;ng L &ndash;1 ) fractions were 5-fold higher than at the reference sites, and 2-fold to 5-fold higher than downstream. Methylmercury production potential of periphyton material was highest (2&ndash;9&thinsp;ng g &ndash;1 d &ndash;1 dry wt) adjacent to the Superfund site; other reaches were close to or below reporting limits (0. 1&thinsp;ng g &ndash;1 d &ndash;1 dry wt). Total Hg and MeHg bioaccumulation in fauna was variable across sites and taxa, with no clear spatial patterns downstream of the contamination source. Crayfish, mayflies, and shiners showed a weak positive relationship with porewater MeHg concentration.

New Hampshire↗

Evaluating dewatering approaches to protect larval Pacific lamprey

Executive Summary Larval Pacific lamprey live for several years burrowed in nearshore sediments where they filter feed on detritus and organic matter. Dewatering of larval habitat can occur as a result of flow-management practices, construction projects, or seasonal closures of irrigation diversions. Effective management of dewatering events requires guidance on approaches to protect lamprey, such as dewatering rates and light conditions (day or night) that allow lamprey the best opportunity to relocate water and avoid being stranded. We conducted controlled laboratory experiments comparing five dewatering rates (1, 1.8, 4, 8, and 16 inches per hour [in/h]) and two light conditions (light and dark) to evaluate their effectiveness in protecting larval lamprey. We used a tank with a simulated shoreline at a 10-percent slope filled with river sediment and manipulated the outflow to control the rate of dewatering until water was covering only the sediment in the lowest tank section, at the bottom of the slope. Following dewatering, larvae were classified as either stranded (in or on the substrate outside the watered area) or safe (relocated to the wetted area at the lower end of the tank). All study groups experienced high rates of stranding. The lowest stranding rates were for 1 in/h, in both light (77 percent) and dark (80 percent). Faster dewatering rates generally produced higher percentages of stranded fish, and both the dark and light trials at 16 in/h stranded all larvae. At each of the five dewatering rates, trials conducted in the dark stranded the same or higher proportions of fish than the corresponding trial conducted in the light, so there was no clear advantage to dewatering during dark conditions. The largest contribution to stranding rates for all study groups was the high number of larvae (50–80 percent) that did not initiate movement in response to dewatering and remained in the uppermost tank section where they were stocked at the start of the trials. The proportion of larvae that emerged from the sediment during dewatering trials was approximately 30 percent, and fish that emerged were consistently smaller than those that remained burrowed. Combining all dewatering rates, emergence was 31.3 percent for groups under dark conditions and 30.7 percent for groups under light conditions. We recorded the timing of emergence for 58 larvae and their median time to emerge (after the surface of the sediment in the uppermost tank section was dewatered) was 0.62 hour (h) (range 0–4.5 h). We measured larval movement rates and found that large fish moved faster than small fish. Differences in larval movement rate based on light condition were significant only for large fish, which had a significantly faster rate during light conditions. Larval lamprey moved, over short distances, at rates that exceeded the fastest dewatering rate we tested. The mean movement rates for groups ranged from 19.0 to 44.4 centimeters per minute [cm/min]) and the fastest dewatering rate (16 in/h) is equivalent to less than 1 cm/min. Only the slowest movement rate measured, 6.6 cm/min for one individual lamprey, was slower than the fastest dewatering rate. We also investigated lamprey responses to a series of dewatering and rewatering events. Individual larvae were held in cylinders and exposed to four cycles of dewatering and rewatering using dewatering rates of 1 and 16 in/h and a rewatering rate of 2 in/h. Each dewatering rate was tested under both dark and light conditions. The location of fish, either on the surface of the sediment or burrowed, was recorded after each dewatering event for four rounds. The most common individual fish response for all study groups was to remain burrowed through all four rounds, and there were large differences in response between small and large larvae. Overall for small larvae, combining all groups, 14 of 28 fish emerged, and of those, 8 died and 1 was lethargic. The 1-in/h rate had 7 of the 8 mortalities, split about equally between the dark (3 fish) and light (4 fish) trials. All but one fish that died emerged from the sediment at some point during the four rounds of dewatering. Large larvae predominantly remained burrowed in all four rounds and did not experience any mortality. None of the large fish emerged for more than a single round, and emergence occurred only in the first and second rounds. Larvae emerged more quickly as the number of dewatering events increased. The mean time to emerge after the surface of the sediment in the tube was dewatered, combing all four groups, was 42 minutes (min) in round 1 (14 fish), 16 min in round 2 (5 fish), 11 min in round 3 (3 fish), and 8 minutes in round 4 (3 fish). When all groups and rounds of dewatering were combined, the overall mean time to emerge was 29 min (25 fish) and ranged from 1 min to 2 hours after the surface of the sediment was dewatered. Larvae burrowed deeper during the 1-in/h trials than the 16-in/h trials, and few fish were deeper than about 23 centimeters (cm). Large larvae burrowed deeper than small larvae. Small larvae were most concentrated from 0 to 7.6 cm (83.7 percent), and large fish were concentrated from 15.2 to 22.8 cm (43.3 percent). The second dewatering event resulted in greater mean burrowing depth than the first event, but trends after the second event were less clear. Larval size played a role in lamprey responses to dewatering, having a significant effect on emergence, movement rate, and vertical distribution. The sediment used for laboratory testing or occupied by lamprey in the field appears to affect lamprey response to dewatering and deserves greater attention in future studies. Larvae were more active in the dark, but darkness did not consistently provide better outcomes (e.g., more emergence or reduced stranding) compared to daylight. An improved understanding of the cues that prompt larvae to emerge from the sediment, combined with the ability to manage dewatering rates, would be useful to guide future dewatering events to minimize negative effects to lamprey.

Open-File Report↗

Topography and Sedimentation Characteristics of the Squaw Creek National Wildlife Refuge, Holt County, Missouri, 1937-2002

The Squaw Creek National Wildlife Refuge (hereafter referred to as the Refuge), located on the Missouri River floodplain in northwest Missouri, was established in 1935 to provide habitat for migratory birds and wildlife. Results of 1937 and 1964 topographic surveys indicate that sedimenta-tion, primarily from Squaw Creek and Davis Creek inflows, had substantially reduced Refuge pool volumes and depths. A study was undertaken by the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, to quantify and spatially analyze historic rates of sedimentation in the Refuge and determine the surface elevations, depths, and pool capacities for selected managed pools from a 2002 survey.The 1937 to 1964 mean total sediment depo-sition, in the area corresponding to the 2002 sur-veyed pool area (about 4,900 acres), was 1.26 ft (feet), or 0.047 ft/yr (foot per year). Mean annual rates of deposition, by pool, from 1937 to 1964 varied from 0.016 to 0.083 ft/yr. From 1964 to 2002, the mean total sediment deposition in the 2002 surveyed pools was 0.753 ft, or 0.020 ft/yr. Therefore, the mean rate of sediment-depth accu-mulation from 1964 to 2002 was about 42 percent of the mean 1937 to 1964 rate, or a 58 percent reduction. Mean annual rates of deposition by pool from 1964 to 2002 varied from 0.010 to 0.049 ft/yr. Despite a substantial reduction in the average sediment accumulation rate for the Refuge, 5 of the 15 separate pools for which annual rates were calculated for both periods showed a small increase in the deposition rates of up to 0.008 ft/yr. Sediment deposits have resulted in a sub-stantial cumulative loss of volume in the Refuge pools since 1937. The 1937 to 2002 total sediment volume deposited in the 2002 surveyed pool area was about 9,900 acre-ft (acre-feet), or 152 acre-ft/yr (acre-feet per year). The volume of sediment deposited from 1937 to 1964 for these pools was about 6,200 acre-ft, or 230 acre-ft/yr. The volume deposited from 1964 to 2002 was about 3,700 acre-ft, or 97.3 acre-ft/yr.Bulk density values were determined from sediment cores collected from 22 sites in the Ref-uge and the bulk densities, along with sediment volumes, allowed for the calculation of sediment mass contributions to the Refuge. From 1937 to 2002, about 10,300,000 tons of sediment were deposited in the 2002 surveyed area, or 32.4 tons/acre/yr (tons per acre per year). The total computed mass of sediment deposited between 1937 and 1964 was about 6,510,000 tons, or an average of 49.1 tons/acre/yr. The total mass depos-ited from 1964 to 2002 in surveyed pools was about 3,830,000 tons, or an average of 20.5 tons/acre/yr. As with sediment thickness compari-sons, the rate of sediment mass deposition between 1964 to 2002 was about 42 percent of that from 1937 to 1964, or a 58 percent reduction.The greatest amounts of sediment deposition in the Refuge for 1937 to 2002 have been near the Squaw Creek and Davis Creek inflow spillway locations. Sediment depths in some areas near former inflow locations have exceeded 8 ft. Relo-cation of an inflow spillway effectively reduced additional sediment deposition at the original loca-tion, and caused increased sedimentation at the new inflow location. This is most clearly depicted in a pool located in the north section of the Refuge that directly received Squaw Creek inflows from 1937 to 1964 and had a mean deposition rate of 0.081 ft/yr reduced to 0.012 ft/yr, from 1964 to 2002, after inflows were redirected and erosion-management plans were implemented in the con-tributing basins.

Water-Resources Investigations Report↗