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At least 811 records · Page 45Linked to original sources
USGS2018

From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?

Depth is usually considered the main driver of Lake Trout intraspecific diversity across lakes in North America. Given that Great Bear Lake is one of the largest and deepest freshwater systems in North America, we predicted that Lake Trout intraspecific diversity to be organized along a depth axis within this system. Thus, we investigated whether a deep-water morph of Lake Trout co-existed with four shallow-water morphs previously described in Great Bear Lake. Morphology, neutral genetic variation, isotopic niches, and life-history traits of Lake Trout across depths (0–150 m) were compared among morphs. Due to the propensity of Lake Trout with high levels of morphological diversity to occupy multiple habitat niches, a novel multivariate grouping method using a suite of composite variables was applied in addition to two other commonly used grouping methods to classify individuals. Depth alone did not explain Lake Trout diversity in Great Bear Lake; a distinct fifth deep-water morph was not found. Rather, Lake Trout diversity followed an ecological continuum, with some evidence for adaptation to local conditions in deep-water habitat. Overall, trout caught from deep-water showed low levels of genetic and phenotypic differentiation from shallow-water trout, and displayed higher lipid content (C:N ratio) and occupied a higher trophic level that suggested an potential increase of piscivory (including cannibalism) than the previously described four morphs. Why phenotypic divergence between shallow- and deep-water Lake Trout was low is unknown, especially when the potential for phenotypic variation should be high in deep and large Great Bear Lake. Given that variation in complexity of freshwater environments has dramatic consequences for divergence, variation in the complexity in Great Bear Lake (i.e., shallow being more complex than deep), may explain the observed dichotomy in the expression of intraspecific phenotypic diversity between shallow- vs. deep-water habitats. The ambiguity surrounding mechanisms driving divergence of Lake Trout in Great Bear Lake should be seen as reflective of the highly variable nature of ecological opportunity and divergent natural selection itself.

Northwest Territories↗
USGS2016

Ecological and evolutionary consequences of benthic community stasis in the very deep sea (>1500 m)

An enigma of deep-sea biodiversity research is that the abyss with its low productivity and densities appears to have a biodiversity similar to that of shallower depths. This conceptualization of similarity is based mainly on per-sample estimates (point diversity, within-habitat, or α-diversity). Here, we use a measure of between-sample within-community diversity (β 1H ) to examine benthic foraminiferal diversity between 333 stations within 49 communties from New Zealand, the South Atlantic, the Gulf of Mexico, the Norwegian Sea, and the Arctic. The communities are grouped into two depth categories: 200–1500 m and >1500 m. β 1H diversity exhibits no evidence of regional differences. Instead, higher values at shallower depths are observed worldwide. At depths of >1500 m the average β 1H is zero, indicating stasis or no biodiversity gradient. The difference in β 1H -diversity explains why, despite species richness often being greater per sample at deeper depths, the total number of species is greater at shallower depths. The greater number of communities and higher rate of evolution resulting in shorter species durations at shallower depths is also consistent with higher β 1H values.

Arctic Ocean;Gulf Of Mexico;Norwegian Sea;South At↗
USGS2004

Population structure and inbreeding vary with successional stage in created Spartina alterniflora marshes

Recruitment patterns in clonal plant populations are predicted to vary with seed dispersal capability and disturbance regime, such that species with small, widely dispersed seeds will become increasingly dominated by vegetative recruitment on disturbed areas following early colonization. Subsequent mortality due to competitive or stochastic effects is then predicted to cause a gradual decline in both clonal diversity and the ability of surviving clones to avoid geitonogamous mating and possible inbreeding depression. We tested predictions of these hypotheses by comparing four adjacent populations of the salt marsh plant, Spartina alterniflora, ranging in age from 2 to ∼50 yr, by measuring fine‐scale genetic structure at the level of both ramets and genets, and the rate of inbreeding. For this purpose, we sampled maternal tissue and seeds from discrete patches in the field and then genotyped both maternal and seedling tissue (germinated in a growth chamber) using standard molecular protocols. As predicted, we observed an increase in clonal diversity (measured as the complement of the Simpson Index corrected for finite sample sizes, 1 − D ) up to a maximum of 0.71 within 3‐m 2 patches at 16 yr, declining to 0.55 by ∼50 yr. Local recruitment of seedlings was evident as genetic structure occurring at the level of patches, as measured by the fixation index, θ, which was inversely correlated with diversity ( R 2 > 0.90 at all patch scales). Outcrossing rates were positively associated with clonal diversity, with the highest level (89%) at an intermediate level of 1 − D. The greatest selfing (32%) occurred in young (2‐yr‐old) patches with low diversity. Biparental inbreeding was minimal in all populations, never exceeding 1%. Inbreeding depression was inferred to be severe, as evidenced by near‐zero adult inbreeding coefficients. These results suggest a possible fitness trade‐off between clonal growth and the opportunity for outcrossing. We recommend that restoration plantings of clonal species with limited sexual recruitment capabilities should be designed to ensure adequate clonal diversity for the avoidance of inbreeding and the ability to adapt to subsequent environmental disturbances.

Louisiana↗
USGS2016

The role of competition – colonization tradeoffs and spatial heterogeneity in promoting trematode coexistence

Competition – colonization tradeoffs occur in many systems, and theory predicts that they can strongly promote species coexistence. However, there is little empirical evidence that observed competition – colonization tradeoffs are strong enough to maintain diversity in natural systems. This is due in part to a mismatch between theoretical assumptions and biological reality in some systems. We tested whether a competition – colonization tradeoff explains how a diverse trematode guild coexists in California horn snail populations, a system that meets the requisite criteria for the tradeoff to promote coexistence. A field experiment showed that subordinate trematode species tended to have higher colonization rates than dominant species. This tradeoff promoted coexistence in parameterized models but did not fully explain trematode diversity and abundance, suggesting a role of additional diversity maintenance mechanisms. Spatial heterogeneity is an alternative way to promote coexistence if it isolates competing species. We used scale transition theory to expand the competition – colonization tradeoff model to include spatial variation. The parameterized model showed that spatial variation in trematode prevalence did not isolate most species sufficiently to explain the overall high diversity, but could benefit some rare species. Together, the results suggest that several mechanisms combine to maintain diversity, even when a competition – colonization tradeoff occurs.

Ecology↗
USGS1985

Environmental trends among Neogene benthic foraminifers at Deep Sea Drilling Project Site 548, Irish continental margin

An analysis of diversity and abundance trends among all benthic foraminiferal genera and species, and particularly among species of Bolivina, was carried out for 59 samples of Neogene sediment from DSDP-IPOD Site 548, Goban Spur. By correlating these census data with lithological, geophysical, geochemical, and other faunal and floral measurements in the same stratigraphic interval, a record of irregularly fluctuating cycles was compiled. We interpret them as indicators of relative sea level. High sea levels are characterized by pelagic sedimentation and by high generic and total species diversities. During low sea level, diversity values were lower, and the accumulation of terrigenous detritus was more prevalent at the site. A sequence recording five highstands and five lowstands is interrupted by four unconformities in a scenario remarkably similar to that postulated in the work of P. R. Vail and his colleagues. Bolivina species diversity also varied cyclically. We interpret diversity of Bolivina species as a measure of relative oxygen and nutrient content at the water/sediment interface; high diversity indicates the presence of an oxygen-minimum layer, accompanied by nutrient enrichment. Our data show that this property generally varied directly with sea level, but sometimes varied independently.

Initial reports of the Deep Sea Drilling Project↗
USGS2008

Lower Methow tributaries intensive effectiveness monitoring study. Interim report

Actions have been taken to replace diversion dams in lower Beaver Creek with a series of rock vortex weirs. Some of these diversion dams have been in place for over 100 years, and they have impaired or completely blocked upstream migration of fish. Three diversion dams were replaced in 2003 (Lower Stokes, Thurlow Transfer, and Upper Stokes), and a forth diversion dam was replaced in 2004 (Fort-Thurlow). These vortex weirs were designed and installed under the supervision of U.S. Bureau of Reclamation (BOR) engineers and completed in accordance to National Marine Fisheries Service (NMFS) and Washington Department of Fisheries and Wildlife (WDFW) fish passage criteria. The projects were designed to meet fish species recovery needs described by the Endangered Species Act (ESA) and the “BiOp” issued by NMFS (2000a). Since no specific guidelines have been identified to date specifically addressing diversion dams, WDFW and NMFS guidelines are being considered as the target design and performance criteria for the sites monitored as part of this project. Where used, the vortex weirs were designed to maintain irrigation diversion capabilities while improving fish passage.

Washington↗
USGS2006

Genetic analyses of captive Alala (Corvus hawaiiensis) using AFLP analyses

Population level studies of genetic diversity can provide information about population structure, individual genetic distinctiveness and former population size. They are especially important for rare and threatened species like the Alala, where they can be used to assess extinction risks and evolutionary potential. In an ideal situation multiple methods should be used to detect variation, and these methods should be comparable across studies. In this report, we discuss AFLP (Amplified Fragment Length Polymorphism) as a genetic approach for detecting variation in the Alala , describe our findings, and discuss these in relation to mtDNA and microsatellite data reported elsewhere in this same population. AFLP is a technique for DNA fingerprinting that has wide applications. Because little or no prior knowledge of the particular species is required to carry out this method of analysis, AFLP can be used universally across varied taxonomic groups. Within individuals, estimates of diversity or heterozygosity across genomes may be complex because levels of diversity differ between and among genes. One of the more traditional methods of estimating diversity employs the use of codominant markers such as microsatellites. Codominant markers detect each allele at a locus independently. Hence, one can readily distinguish heterozygotes from homozygotes, directly assess allele frequencies and calculate other population level statistics. Dominant markers (for example, AFLP) are scored as either present or absent (null) so heterozygotes cannot be directly distinguished from homozygotes. However, the presence or absence data can be converted to expected heterozygosity estimates which are comparable to those determined by codominant markers. High allelic diversity and heterozygosity inherent in microsatellites make them excellent tools for studies of wild populations and they have been used extensively. One limitation to the use of microsatellites is that heterozygosity estimates are affected by the mutation rate at microsatellite loci, thus introducing a bias. Also, the number of loci that can be studied is frequently limited to fewer than 10. This theoretically represents a maximum of one marker for each of 10 chromosomes. Dominant markers like AFLP allow a larger fraction of the genome to be screened. Large numbers of loci can be screened by AFLP to resolve very small individual differences that can be used for identification of individuals, estimates of pairwise relatedness and, in some cases, for parentage analyses. Since AFLP is a dominant marker (can not distinguish between +/+ homozygote versus +/- heterozygote), it has limitations for parentage analyses. Only when both parents are homozygous for the absence of alleles (-/-) and offspring show a presence (+/+ or +/-) can the parents be excluded. In this case, microsatellites become preferable as they have the potential to exclude individual parents when the other parent is unknown. Another limitation of AFLP is that the loci are generally less polymorphic (only two alleles/locus) than microsatellite loci (often >10 alleles/locus). While generally fewer than 10 highly polymorphic microsatellite loci are enough to exclude and assign parentage, it might require up to 100 or more AFLP loci. While there are pros and cons to different methodologies, the total number of loci evaluated by AFLP generally offsets the limitations imposed due to the dominant nature of this approach and end results between methods are generally comparable. Overall objectives of this study were to evaluate the level of genetic diversity in the captive population of Alala, to compare genetic data with currently available pedigree information, and to determine the extent of relatedness of mating pairs and among founding individuals.

Open-File Report↗
USGS2011

Population status and population genetics of northern leopard frogs in Arizona

Increasing isolation of populations by habitat fragmentation threatens the persistence of many species, both from stochastic loss of small isolated populations, and from inbreeding effects in populations that have become genetically isolated. In the southwestern United States, amphibian habitat is naturally patchy in occurrence because of the prevailing aridity of the region. Streams, rivers, and other wetlands are important both as habitat and as corridors that connect populations. However, populations of some species have become more fragmented and isolated by habitat degradation and loss. Northern leopard frogs (Rana pipiens) have experienced serious declines in the Southwest. We conducted an extensive survey across the known range of northern leopard frogs in Arizona to determine the current distribution and abundance of the species. From a range that once spanned much of the northern and central part of the State, northern leopard frogs have been reduced to three or four widely separated populations, near Lyman Lake in east-central Arizona, in the Stoneman Lake area south of Flagstaff, along Truxton Wash near Peach Springs, and a population of uncertain extent on Navajo Nation lands. The Lyman Lake and Truxton Wash populations are small and extremely isolated. The Stoneman Lake population, however, is an extensive metapopulation spread across several stream drainages, including numerous ponds, wetlands, and artificial tanks. This is the only population in Arizona that is increasing in extent and numbers, but there is concern about the apparent introduction of nonnative genetic stock from eastern North America into this area. We analyzed genetic diversity within and genetic divergence among populations of northern leopard frogs, across both extant and recently extirpated populations in Arizona. We also analyzed mitochondrial DNA to place these populations into a larger phylogenetic framework and to determine whether any populations contained genetic material not native to the region. We found a high level of genetic divergence among the population centers (Lyman Lake, Stoneman Lake, Truxton Wash), and low genetic diversity in the small populations at Lyman Lake and Truxton. The extensive population in the Stoneman Lake area had high genetic diversity and relatively high gene flow among ponds and tanks across the entire extent of the area. However, this population also contained a mitochondrial haplotype from northern leopard frogs from the northeastern United States or southeastern Canada, probably representing the introduction of released pets or laboratory animals. These eastern frogs were extensively distributed through this population, and probably contributed to its high genetic diversity. Genetic diversity in the outlying populations such as Truxton Wash, East Buckskin Tank, and Hess Tank was low and showed signs of recent bottlenecks. However, supplementing genetic diversity in these native populations with artificial gene flow from the Stoneman Lake area may only be advisable in extreme situations for which there are no other alternatives. Until the nature and effects of genetic mixing of eastern and western genetic stocks of northern leopard frogs are better understood, the long-term persistence of the species in the Southwest may be best served by retaining as much genetic integrity of remaining native populations as possible.

Arizona↗
USGS2013

Monitoring of stage and velocity, for computation of discharge in the Summit Conduit near Summit, Illinois, 2010-2012

Lake Michigan diversion accounting is the process used by the U. S. Army Corps of Engineers to quantify the amount of water that is diverted from the Lake Michigan watershed into the Illinois and Mississippi River Basins. A network of streamgages within the Chicago area waterway system monitor tributary river flows and the major river flow on the Chicago Sanitary and Ship Canal near Lemont as one of the instrumental tools used for Lake Michigan diversion accounting. The mean annual discharges recorded by these streamgages are used as additions or deductions to the mean annual discharge recorded by the main stream gaging station currently used in the Lake Michigan diversion accounting process, which is the Chicago Sanitary and Ship Canal near Lemont, Illinois (station number 05536890). A new stream gaging station, Summit Conduit near Summit, Illinois (station number 414757087490401), was installed on September 23, 2010, for the purpose of monitoring stage, velocity, and discharge through the Summit Conduit for the U.S. Army Corps of Engineers in accordance with Lake Michigan diversion accounting. Summit Conduit conveys flow from a small part of the lower Des Plaines River watershed underneath the Des Plaines River directly into the Chicago Sanitary and Ship Canal. Because the Summit Conduit discharges into the Chicago Sanitary and Ship Canal upstream from the stream gaging station at Lemont, Illinois, but does not contain flow diverted from the Lake Michigan watershed, it is considered a flow deduction to the discharge measured by the Lemont stream gaging station in the Lake Michigan diversion accounting process. This report offers a technical summary of the techniques and methods used for the collection and computation of the stage, velocity, and discharge data at the Summit Conduit near Summit, Illinois stream gaging station for the 2011 and 2012 Water Years. The stream gaging station Summit Conduit near Summit, Illinois (station number 414757087490401) is an example of a nonstandard stream gage. Traditional methods of equating stage to discharge historically were not effective. Examples of the nonstandard conditions include the converging tributary flows directly upstream of the gage; the trash rack and walkway near the opening of the conduit introducing turbulence and occasionally entraining air bubbles into the flow; debris within the conduit creating conditions of variable backwater and the constant influx of smaller debris that escapes the trash rack and catches or settles in the conduit and on the equipment. An acoustic Doppler velocity meter was installed to measure stage and velocity to compute discharge. The stage is used to calculate area based the stage-area rating. The index-velocity from the acoustic Doppler velocity meter is applied to the velocity-velocity rating and the product of the two rated values is a rated discharge by the index-velocity method. Nonstandard site conditions prevalent at the Summit Conduit stream gaging station generally are overcome through the index-velocity method. Despite the difficulties in gaging and measurements, improvements continue to be made in data collection, transmission, and measurements. Efforts to improve the site and to improve the ratings continue to improve the quality and quantity of the data available for Lake Michigan diversion accounting.

Illinois↗
USGS1978

Reconnaissance of chemical quality of surface water and fluvial sediment in the Dirty Devil River basin, Utah

The water-quality reconnaissance in the Dirty Devil River basin, Utah, covered an area of about 4,300 square miles (11,100 square kilo-meters). Data were obtained by the U.S. Geological Survey one or more times at 104 sites during the period July 1975 to September 1976; and during visits to 34 other sites during the same period, the streams were dry. Precipitation was below normal in both 1975 and 1976 at weather stations at Emery and Capitol Reef National Park and was above normal in 1975 and below normal in 1976 at Hanksville. Streamflow was near normal in the Dirty Devil River basin in 1975 and was much below normal in 1976. Rocks that crop out in the basin range in age from Permian to Quaternary. The Carmel Formation of Jurassic age and various members of the Mancos Shale of Cretaceous age are major contributors of dissolved solids to streams in the basin. Major diversions are made from Muddy Creek for irrigation in the Emery area. Downstream reaches of Muddy Creek commonly receive only seepage and irrigation return flow. Three major irrigation diversions near Fremont commonly remove nearly all the flow from the upper Fremont River. Major flow accretions to the Fremont River in Bicknell Bottoms furnish water for additional diversions along the remaining length of the Fremont River. The most pronounced change in chemical characteristics of water in streams in the Dirty Devil River basin occurs in a 15-mile (24-kilometer) reach of Muddy Creek between the major diversions 5 miles (8 kilometers) north of Emery and the point at which Highway 1-70 crosses Muddy Creek. Dissolved-solids concentrations at the diversions are generally less than 300 milligrams per liter and at the lower end of the reach are commonly greater than 2,000 milligrams per liter. Factors that contribute to the deterioration in the chemical quality of water in the Emery area are the soluble minerals in the rocks of Cretaceous age that crop out in the area, the major or total diversion of flow of Muddy Creek, and the irrigation of and return flow from soils that have commonly developed on material derived from gypsum-bearing marine shale. Dissolved-solids concentrations remain high to the mouth of Muddy Creek near Hanksville. Only one perennial stream--Salt Wash--enters Muddy Creek between Highway 1-70 and the mouth. The discharge of Salt Wash is usually 2.0 to 2.5 cubic feet per second (0.057 to 0.071 cubic meter per second), and the dissolved-solids concentration ranges from about 5,400 to 5,900 milligrams per liter.

Utah↗
USGS1982

Palaeocopid and podocopid Ostracoda from the Lexington Limestone and Clays Ferry Formation (Middle and Upper Ordovician) of central Kentucky

The Middle through lower Upper Ordovician Lexington Limestone and lower part of the Clays Ferry Formation contain an abundant and diversified ostracode fauna. More than 10,000 specimens belonging to 39 genera and 53 species have been found in 73 collections made by members of the U.S. Geological Survey in cooperation with the Kentucky Geological Survey between 1961 and 1970. Five of the genera and 17 of the species are new. New taxa include the genera Gephyropsis, Ningulella, Phelobythocypris, Quasibollia, and Uninodobolba and the following species: Americoncha dubia, Ballardina millersburgia, Brevidorsa strodescreekensis, Ceratopsis asymme , trica C. fimbriata, Ctenobolbina ventrispinifera, Cystomatochilina reticulotiara, Easchmidtella sinuidorsata, Gephyropsis trachyreticulata, Jonesella gonyloba, Laccoprimitia claysferryensis, L. cryptomorphologica, Leperditella? perplexa, Ningulella paupera, Parenthatia sadievillensis, Silenis kentuckyensis, and Uninodobolba franklinensis. In addition, a new species, Quasibollia copelandi, is described from the Middle Ordovician of Ontario. The type specimens of ostracodes previously described from these formations but not represented in the recent collections are redescribed and refigured. The genus Warthinia Spivey, 1939, is reinstated for Ordovician bolliids with two to four nodes, and the genus Ceratopsis Ulrich, 1894, is reviewed with new figures of all known North American species of the genus. Forty-four collections included enough specimens to warrant quantitative analysis. The temporal and spatial distribution of the genera were defined by using Q-mode cluster analysis based on Sorensen's quantified coefficient of association. The resulting phenogram indicated the existence of eight clusters; these clusters were characterized by calculation of constancy and fidelity measures for each of the variables. Generic diversity, compound generic diversity, and lithologic associations were scanned in an attempt to delineate the paleoecologic regime of each cluster. In general, a trend can be seen in which the higher diversity Phelobythocypris-dominated clusters are found in the muddier rocks and less diverse, highly Ceratopsisdominated clusters in the predominantly carbonate members. An exception to this generalization is found in the limestones of the Strodes Creek Member of the Lexington Limestone which has the highest ostracode diversity. However, the Strodes Creek is found entirely within the confines of the muddy Millersburg Member of the Lexington and is believed to represent a similar environment. Diversity differences in these ostracode associations are thought to be controlled mainly by substrate and kinetic energy level. We suggest that the associations may represent ecologically controlled ostracode assemblages.

Professional Paper↗
USGS2016

Hydrogeological framework, numerical simulation of groundwater flow, and effects of projected water use and drought for the Beaver-North Canadian River alluvial aquifer, northwestern Oklahoma

This report describes a study of the hydrology, hydrogeological framework, numerical groundwater-flow models, and results of simulations of the effects of water use and drought for the Beaver-North Canadian River alluvial aquifer, northwestern Oklahoma. The purpose of the study was to provide analyses, including estimating equal-proportionate-share (EPS) groundwater-pumping rates and the effects of projected water use and droughts, pertinent to water management of the Beaver-North Canadian River alluvial aquifer for the Oklahoma Water Resources Board. The Beaver-North Canadian River alluvial aquifer consists of unconsolidated sand, gravel, silt, and clay in varying proportions that underlies the Beaver and North Canadian River Valleys for approximately 175 miles (mi) from the Oklahoma Panhandle to the western edge of Oklahoma City in central Oklahoma. The aquifer as delineated for this study varies from 4 to 12 mi wide and is as thick as 308 feet (ft) in the northwest where the aquifer includes the Ogallala Formation. There are two distinct but in most areas hydraulically connected alluvial units that compose the Beaver-North Canadian River alluvial aquifer: a Quaternary-age topographically higher terrace deposit and a topographically lower, younger alluvium along the active river channel that includes active and Quaternary-age alluvium. The Beaver River composes the headwaters of the North Canadian River, which begins at the confluence of the Beaver River and Wolf Creek. The aquifer is divided for water management into two geographic areas: Reach I upstream from Canton Dam and Reach II downstream from Canton Dam. Reach I covers an area of approximately 874 square miles (mi 2 ), and Reach II covers an area of approximately 371 mi 2 . The Beaver-North Canadian River alluvial aquifer crosses several climatic zones, from semiarid in the west to continental subhumid in the east. Mean annual precipitation varies from 23.5 inches (in.) in the western part of this aquifer to 35.7 in. in the east. Surface-water demands were met through numerous temporary and permanent surface-water diversions from the Beaver and North Canadian Rivers during the period of study. During the study period, seven diversions removed a mean annual 2,000 acre-feet (acre-ft) of water from Reach I. There were 14 diversions from Reach II with a mean annual permitted volume of approximately 81,000 acre-ft, including diversion into the Lake Hefner Canal for the Oklahoma City public water supply. During the period of this study, 17 temporary surface-water diversion permits were active in Reach I, with total permitted volumes of 2,000 acre-ft, and 41 diversions were active in Reach II, with total permitted volumes of 38,000 acre-ft. The total water use for each temporary permit was assumed to be taken over the 3-month period allotted to temporary withdrawal permits. The groundwater-use analysis full period of record, 1967–2011, was divided into two sub-intervals because of varying water use, 1970–80 and 1981–2011. Groundwater use in Reach I and Reach II was substantially greater from 1970 to 1980 compared to the rest of the period, and the sub-period 1981–2011 was used because this period includes recent population growth and modern irrigation methods. The total mean annual groundwater use in Reach I was 15,309 acre-feet per year (acre-ft/yr) during 1967–2011; 20,724 acre-ft/yr during 1970–80, and 13,739 acre-ft/yr during 1981–2011. Total mean annual groundwater use in Reach II was similar but slightly less than in Reach I, with 14,098 acre-ft/yr during 1967–2011; 19,963 acre-ft/yr during 1970–80; and 12,285 acre-ft/yr during 1981–2011. Irrigation composed 72 percent of groundwater use in Reach I and 48 percent of groundwater use in Reach II during the 1967–2011 period. Public water supply was a much smaller proportion of total groundwater use in Reach I (15 percent) than in Reach II (39 percent). The proportion of groundwater use for power was 10 percent in Reach I and 5.2 percent in Reach II. All other water-use categories in Reach I only composed 2.2 percent of groundwater use in Reach I. In Reach II, industrial, mining, and commercial categories combined accounted for 4.4 percent of groundwater use; recreation, fish, and wildlife groundwater use accounted for 2.3 percent; and nonirrigated agriculture accounted for 1.5 percent of groundwater use. Permian-age bedrock underlies the Beaver-North Canadian River alluvial aquifer. In the east, the Dog Creek Shale, the Duncan Sandstone, and the Blaine and Chickasha Formations, none of which are notable sources of groundwater in the study area, underlie the Beaver-North Canadian River alluvial aquifer. In the northwestern part of Reach I, bedrock is composed of the Rush Springs and Marlow Formations, which are productive aquifers in some areas. The Cloud Chief Formation is not a source of groundwater. One hydrogeological unit was delineated in the Beaver-North Canadian River alluvial aquifer, composed of the terrace deposits and alluvium, with limited flow between this unit and bedrock units. Groundwater in this aquifer generally flows from northwest to southeast and across the aquifer toward the Beaver and North Canadian Rivers. Groundwater recharge from precipitation was estimated for the entire Beaver-North Canadian River alluvial aquifer and then itemized for both reaches by using a soil-water-balance (SWB) model. At two locations in Reach I, a water-table fluctuation method was used to estimate local recharge. Total mean annual groundwater recharge from the soil-water-balance method was estimated to be approximately 136,400 acre-ft in Reach I and 82,400 acre-ft in Reach II; the mean annual recharge for both reaches combined was approximately 218,800 acre-ft. Two sites in Reach I located at observation wells with continuous water-level measurements and nearby streamflow-gaging stations with precipitation gages were used to estimate the percentage of precipitation that becomes groundwater recharge. The Woodward site was located at observation well OW-4 near the Woodward, Okla. (07237500), streamflow-gaging station. Total precipitation and recharge for the Woodward and Seiling sites were calculated for the water year 2013. The Woodward site had a total of 14.18 in. of precipitation and 6.3 in. of recharge was calculated, equaling 44 percent of precipitation. The mean percentage of precipitation that was estimated to become recharge in the SWB model for the period 1980–2011 at that location was 9.2 percent, although adjacent SWB-model cells were as high as 20 percent of precipitation. The Seiling site had a total of 26.84 in. of precipitation during the water year 2013, and a total of 6.9 in. of recharge was estimated, equaling 25.9 percent of precipitation. At the Seiling site, the mean percentage of precipitation that became recharge in the SWB model for the period 1980–2011 was 23.0 percent. The principal inflow to the Beaver-North Canadian River alluvial aquifer was estimated to be surface recharge from precipitation, and plant evapotranspiration was estimated to be the greatest discharge, followed by stream and lake base flow, groundwater pumping, and flow to seeps and springs along the eastern margin of the aquifer. Reach I also included inflow from the High Plains aquifer as lateral inflow of groundwater, though this flow was estimated to be a very minor component of the total water budget. Most of the Beaver and North Canadian Rivers were determined to be gaining streamflow from groundwater, but several reaches in Reach I upstream from Wolf Creek were determined to be losing streamflow through infiltration to the aquifer. Aquifer hydrogeologic characteristics were estimated from borehole lithologic logs, well-construction information, and published aquifer tests and during numerical model calibration. The maximum saturated aquifer thickness in Reach I was estimated to be 308 ft, and the mean thickness was estimated to be 36 ft. The maximum saturated thickness in Reach II was estimated to be 86 ft, and the mean thickness was estimated to be 29 ft. Mean hydraulic conductivity of Reach I was estimated to be 70 feet per day (ft/d) with a range of 7–279 ft/d. Mean hydraulic conductivity in Reach II was estimated to be 92 ft/d with a range of 4–279 ft/d. Both reach models were calibrated manually by using trial-and-error adjustment of recharge, hydraulic conductivity, specific yield, and conductance of boundary conditions. The Reach I model used 28 head observations during the steady-state period of 1980 and 487 head observations during the transient period of 1981–2011. The root-mean-square error of head residuals (observed minus simulated head) was 3.86 ft, and 83 percent of head residuals were between -5 and 5 ft. The Reach II model was calibrated to 75 steady-state head observations and 134 head observations during the transient period. The root-mean-square error of head residuals for that reach was 3.58 ft, and similar to Reach I, 85 percent of residuals were between -5 and 5 ft. Several analyses were performed by using the numeric groundwater-flow models as predictive tools, including estimating the EPS pumping rate for both reaches. The EPS is defined by the Oklahoma Water Resources Board as an annual per-acre groundwater-pumping rate that will reduce saturated thickness in half of the aquifer to 5 ft or less over a period of 20 years; additional estimates were made for periods of 40 and 50 years. Other analyses included using models to estimate the effects of groundwater pumping and a prolonged drought on groundwater in storage and streamflow and lake storage of water. The EPS pumping rate was found to be approximately 0.57 acre-feet per acre per year ([acre-ft/acre]/yr) in Reach I and 0.73 (acre-ft/acre)/yr in Reach II for a 20-year period. For a 40-year period, the annual EPS pumping rate was determined to be 0.54 (acre-ft/acre)/yr in Reach I and 0.61 (acre-ft/acre)/yr in Reach II. For a 50-year period, the EPS pumping rate was determined to be 0.53 (acre-ft/acre)/yr in Reach I and 0.61 (acre-ft/acre)/yr in Reach II. Groundwater pumping at the 2011 rate for 50 years resulted in a 3.6-percent decrease in the amount of water in groundwater storage in Reach I and a decrease of 2.5 percent in the amount of groundwater in storage in Reach II. A cumulative 32-percent increase in pumping greater than the 2011 rate over a period of 50 years caused a decrease in groundwater storage of 4.0 percent in Reach I and 3.3 percent in Reach II. A hypothetical severe drought was simulated by using aquifer recharge flow rates during the drought year of 2011 for a period of 10 years. All other flows including evapotranspiration and groundwater pumping were set at estimated 2011 rates. The hypothetical drought caused a decrease in water in aquifer storage by about 7 percent in Reach I and 7 percent in Reach II. Another analysis of the effects of hypothetical drought estimated the effects of drought on streamflow and lake storage. The hypothetical drought was simulated by decreasing recharge by 75 percent for a selected 10-year period (1994–2004) during the 1980–2011 simulation. In Reach I, the amounts of water stored in Canton Lake and streamflow at the Seiling, Okla., streamflow-gaging station were analyzed. Streamflow at the Seiling station decreased by a mean of 75 percent and was still diminished by 10 percent after 2011. In Reach II, the effect of drought on the streamflow at the Yukon, Okla., streamflow-gaging station was examined. The greatest mean streamflow decrease was approximately 60 percent during the simulated drought, and after 2011, the mean decrease in streamflow was still about 5 percent. Canton Lake storage decreased by as much as 83 percent during the simulated drought and did not recover by 2011.

Oklahoma↗
USGS2017

Comparison of benthos and plankton for Waukegan Harbor Area of Concern, Illinois, and Burns Harbor-Port of Indiana non-Area of Concern, Indiana, in 2015

During two seasonal sampling events in spring (June) and fall (August) of 2015, the U.S. Geological Survey collected benthos (benthic invertebrates) and plankton (zooplankton and phytoplankton) at three sites each in the Waukegan Harbor Area of Concern (AOC) in Illinois and in Burns Harbor-Port of Indiana, a non-AOC comparison site in Indiana. The study was done in cooperation with the U.S. Environmental Protection Agency and the Illinois Department of Natural Resources. Samples were collected concurrently for physical and chemical parameters (specific conductance, temperature, pH, dissolved oxygen, chlorophyll- a , total and volatile suspended solids in water samples; particle size and volatile-on-ignition solids of sediment in dredge samples). The purpose of the study was to assess whether or not aquatic communities at the AOC were degraded in comparison to communities at the non-AOC, which was presumed to be less impaired than the AOC. Benthos were collected by using Hester-Dendy artificial substrate samplers and a Ponar® dredge sampler to collect composited grabs of bottom sediment; zooplankton were collected by using tows from depth to the surface with a 63-micrometer mesh plankton net; phytoplankton were collected by using whole water samples composited from set depth intervals. Aquatic communities at the AOC and the non-AOC were compared by use of univariate statistical analyses with metrics such as taxa richness (number of unique taxa), diversity, and a multimetric Index of Biotic Integrity (IBI, for artificial-substrate samples only) as well as by use of multivariate statistical analyses of taxa relative abundances. Although benthos communities at Waukegan Harbor AOC were not rated as degraded in comparison to the non-AOC, metrics for zooplankton and phytoplankton communities did show some impairment for the 2015 sampling. Across seasons, benthos richness and diversity were significantly higher and rated as less degraded at the AOC compared to the non-AOC; however, benthos IBIs were not significantly different. Multivariate comparisons revealed that the benthos communities in the AOC and non-AOC were significantly different, but these comparisons do not address current degradation in either harbor. The dominant taxa in dredge samples were oligochaete worms in both harbors, but there were differences in the relative abundances of Dreissena as well as oligochaete and midge taxa. Although zooplankton richness and diversity in the AOC were lower and rated as more degraded in spring, these metrics were rated as less degraded in fall compared to the non-AOC, effectively balancing out so that there was no difference across seasons. Multivariate comparisons also indicated that zooplankton communities in the AOC were significantly different from those in the non-AOC for spring only but not across seasons, possibly because of lower water temperatures in spring at Waukegan Harbor than at the non-AOC site. The spring zooplankton community in Waukegan Harbor was dominated in density and biomass by the rotifer Synchaeta . Across seasons, diatom richness was significantly higher and rated as less degraded in the AOC than the non-AOC because of spring values, whereas soft algae richness was significantly lower and rated as more degraded in the AOC because of fall values. Spring richness of combined phytoplankton (soft algae and diatoms) was significantly higher in the AOC than in the non-AOC. Neither diatom diversity nor soft algae diversity differed significantly between the harbors, but combined phytoplankton diversity across seasons, if replicates were included, was significantly lower and rated as more degraded in the AOC than in the non-AOC. Multivariate tests indicated that the combined phytoplankton communities in the harbors were not significantly different across seasons. Significant differences were not found between harbors for chlorophyll- a , suspended solids, algal densities, or biomass.

Illinois, Indiana↗
USGS2018

Nutrient loads in the Lost River and Klamath River Basins, south-central Oregon and northern California, March 2012–March 2015

The U.S. Geological Survey and Bureau of Reclamation collected water-quality data from March 2012 to March 2015 at locations in the Lost River and Klamath River Basins, Oregon, in an effort to characterize water quality and compute a nutrient budget for the Bureau of Reclamation Klamath Reclamation Project. The study described in this report resulted in the following significant findings: Total phosphorus (TP), total nitrogen (TN), 5-day biochemical oxygen demand (BOD5), and 5-day carbonaceous biochemical oxygen demand (CBOD5) loads, calculated using the U.S. Geological Survey LOADEST software package at the upper and lower boundaries of the Klamath Reclamation Project, indicated higher loads at the upper boundary on the southern end of Upper Klamath Lake upstream of the Bureau of Reclamation A Canal diversion compared to the lower boundary on the Klamath River downstream of Keno Dam. Accounting for the diversion of loads down A Canal, BOD5 and CBOD5 loads decreased between these two sites during irrigation season, indicating that the Klamath Reclamation Project is not a large source of oxygen-demanding material and that much of the oxygen demand at study site FMT, the northern boundary of the study area, has been expressed by the time the same water passes through site KRK, the southern boundary of the study area. An evaluation of the nutrient balance along the Klamath River flowpath from sites FMT to KRK indicated that, during irrigation season in the 3 years of the study period (March 2012–March 2015), more loads of TP, TN, BOD5, and CBOD5 were being diverted from the Klamath River than were being added to the Klamath River from the combination of Klamath Straits Drain, regulated point sources along the Klamath River, and internal loading from the bottom sediments in the river. By contrast, during non-irrigation seasons, more loads were added to the Klamath River than were diverted through Ady and North Canals, and this difference primarily was due to additional loads to the river from the Lost River Diversion Channel. At the Lost River Diversion Channel, BOD5 loads were higher during irrigation season than non-irrigation season in all three study years owing to the high concentrations of oxygen-demanding cyanobacterial biomass from the seasonal blooms of Aphanizomenon flos-aquae in the Klamath River and Upper Klamath Lake. The difference between the two seasons was particularly large in years 2 and 3, when the low flows of these two drought years resulted in smaller nonirrigation period loads than in year 1. CBOD5 loads also were higher during irrigation season in years 2 and 3 than during non-irrigation season, indicating that the largest oxygen demand was coming from senescence of Aphanizomenon flos-aquae cells that are present in the Klamath River during the summer. However, during irrigation season in year 1, CBOD5 loads were lower than in the non-irrigation season, which may indicate that at times high concentrations of ammonia or cellular organic nitrogen leaving Upper Klamath Lake contribute a large nitrogenous oxygen demand as well. The smallest loads were computed for the farthest upstream sites in the Lost River Basin, suggesting that the upper Lost River Basin does not contribute substantial loads of TP, TN, BOD5, and CBOD5 to the Klamath Reclamation Project. Median concentrations of BOD5 and CBOD5 were lowest among the upper Lost River Basin sites and highest at site PPD (however, this comparison is based on only four samples collected at site PPD over the 3-year study). Median concentrations of BOD5 and CBOD5 also were elevated at sites KSDH (6.60 and 4.70 milligrams per liter [mg/L], respectively) and KSD97 (4.47 and 3.45 mg/L, respectively). The highest maximum BOD5 and CBOD5 concentrations were reported at the Lost River Diversion Channel (39.0 and 26.5 mg/L, respectively) when water was flowing from the Klamath River toward the Klamath Reclamation Project, and site FMT (25.0 and 23.9 mg/L, respectively), the study site at the southern end of Upper Klamath Lake. Carbonaceous oxygen demand, as represented by CBOD5, typically dominated the composition of the samples at all sites. The highest concentrations of dissolved organic carbon were present at sites KSDH (the headworks of Klamath Straits Drain) and KSD97 (Klamath Straits drain before it enters the Klamath River), and PPD (outlet of Tule Lake). Median concentrations of TN and TP at the upper Lost River Basin sites in years 1 and 2 were variable, but site MCRV showed a smaller range of values in those years compared to the other upper Lost River Basins sites, and an overall lower median concentration during irrigation seasons in years 1 and 2, suggesting that Gerber Reservoir does not contribute high concentrations of nutrients to the Lost River during irrigation season. Total Maximum Daily Load (TMDL) load allocations for TP and TN in Klamath Straits Drain were exceeded in all three study years. BOD5 load allocations were exceeded in years 1 and 2, but not year 3. TMDL load allocations for TP were exceeded in the Lost River Diversion Channel for all 3 years. Load allocations for TN were exceeded in year 1, but not in years 2 and 3. BOD5 loads were less than the TMDL load allocation for all three study years. The dearth of samples collected at the Klamath Straits Drain just downstream of the Lower Klamath National Wildlife Refuge did not allow for direct assessment of the Klamath Straits Drain acting as a nutrient source or sink. TP, TN, BOD5, and CBOD5 loads estimated during the study period likely were smaller than long-term average conditions because of persistent drought conditions in the Upper Klamath Basin. The study results, therefore, fail to characterize loads from the Klamath Reclamation Project to the Klamath River that could be present in typical years, and suggest the need for load assessments during average or aboveaverage streamflow years.

California, Oregon↗
USGS2003

Availability and distribution of base flow in lower Honokohau Stream, Island of Maui

Honokohau Stream is one of the few perennial streams in the Lahaina District of West Maui. Current Honokohau water-use practices often lead to conflicts among water users, which are most evident during periods of base flow. To better manage the resource, data are needed that describe the availability and distribution of base flow in lower Honokohau Stream and how base flow is affected by streamflow diversion and return-flow practices. Flow-duration discharges for percentiles ranging from 50 to 95 percent were estimated at 13 locations on lower Honokohau Stream using data from a variety of sources. These sources included (1) available U.S. Geological Survey discharge data, (2) published summaries of Maui Land & Pineapple Company, Inc. diversion and water development-tunnel data, (3) seepage run and low-flow partial-record discharge measurements made for this study, and (4) current (2003) water diversion and return-flow practices. These flow-duration estimates provide a detailed characterization of the distribution and availability of base flow in lower Honokohau Stream. Estimates of base-flow statistics indicate the significant effect of Honokohau Ditch diversions on flow in the stream. Eighty-six percent of the total flow upstream from the ditch is diverted from the stream. Immediately downstream from the diversion dam there is no flow in the stream 91.2 percent of the time, except for minor leakage through the dam. Flow releases at the Taro Gate, from Honokohau Ditch back into the stream, are inconsistent and were found to be less than the target release of 1.55 cubic feet per second on 9 of the 10 days on which measurements were made. Previous estimates of base-flow availability downstream from the Taro Gate release range from 2.32 to 4.6 cubic feet per second (1.5 to 3.0 million gallons per day). At the two principal sites where water is currently being diverted for agricultural use in the valley (MacDonald's and Chun's Dams), base flows of 2.32 cubic feet per second (1.5 million gallons per day) are available more than 95 percent of the time at MacDonald's Dam and 80 percent of the time at Chun's Dam. Base flows of 4.6 cubic feet per second (3.0 million gallons per day) are available 65 and 56 percent of the time, respectively. A base-flow water-accounting model was developed to estimate how flow-duration discharges for 13 sites on Honokohau Stream would change in response to a variety of flow release and diversion practices. A sample application of the model indicates that there is a 1 to 1 relation between changes in flow release rates at the Taro Gate and base flow upstream from MacDonald's Dam. At Chun's Dam the relation between Taro Gate releases and base flow varies with flow-duration percentiles. At the 95th and 60th percentiles, differences in base flow at Chun's Dam would equal about 50 and 90 percent of the change at the Taro Gate.

Hawaii↗
USGS2021

Vegetation community monitoring: Species composition and biophysical gradients in Klamath Network parks

The Klamath Network of the National Park Service consists of six park units located in northern California and southern Oregon. The Network began implementing a vegetation monitoring protocol in 2011 to identify ecologically significant vegetation trends in the parks. The premise of the protocol is that multivariate analyses of species composition data is the most robust early detection means for identifying vegetation change over time. Here we present these community metrics, based on our initial sampling efforts. We use these metrics to establish a baseline for comparison in future trend analysis, and to evaluate the adequacy of the protocol for meeting the Network’s objectives of detecting temporal changes across contrasting vegetation types. The park landscapes were subdivided into three strata: Matrix (low- to mid-elevation upland habitats), Riparian (within 10 meters of a perennial stream), and High-Elevation (above a predefined elevation, park specific). Across the three strata, we established a total of 241 permanent plots at random locations to measure complete species composition and cover. We describe baseline biophysical conditions and relate them to the data obtained from all 241 plots using ordination analyses. The unconstrained gradient analyses were moderately robust at illustrating the relationships among plots and correlating them to environmental gradients. We also prepared species accumulation curves representing gamma diversity, which showed overall species richness, and also illustrated how well the observed vs. expected richness values of each stratum were captured by the sampling. Most park/strata were well sampled; for others, we found that additional samples would improve how well the protocol captures the vegetation composition within park/strata. Specifically, all sample frames at Whiskeytown and the High-Elevation sample frames at Lassen were not well sampled. Comparisons of alpha diversity values showed High-Elevations had the lowest diversity, while Riparian areas were by far the most diverse across all parks. The Matrix stratum at Oregon Caves National Monument was also especially diverse and had the highest Matrix alpha diversity we observed in all parks We suggest that after three rounds of sampling, the Network perform analyses to identify possible ways to improve statistical power. These options include adding sites or lengthening the sampling interval. Results of these analyses could support protocol modifications. This report on vegetation composition is the first in a series of analysis and synthesis reports. Future analysis and synthesis reports will analyze structure and function.

California, Oregon↗
USGS2012

Spatial and temporal trends of freshwater mussel assemblages in the Meramec River Basin, Missouri, USA

The Meramec River basin in east-central Missouri has one of the most diverse unionoid mussel faunas in the central United States with >40 species identified. Data were analyzed from historical surveys to test whether diversity and abundance of mussels in the Meramec River basin (Big, Bourbeuse, and Meramec rivers, representing >400 river miles) decreased between 1978 and 1997. We found that over 20y, species richness and diversity decreased significantly in the Bourbeuse and Meramec rivers but not in the Big River. Most species were found at fewer sites and in lower numbers in 1997 than in 1978. Federally endangered species and Missouri Species of Conservation Concern with the most severe temporal declines were Alasmidonta viridis, Arcidens confragosus, Elliptio crassidens, Epioblasma triquetra, Fusconaia ebena, Lampsilis abrupta, Lampsilis brittsi , and Simpsonaias ambigua . Averaged across all species, mussels were generally being extirpated from historical sampling sites more rapidly than colonization was occurring. An exception was one reach of the Meramec River between river miles 28.4 and 59.5, where mussel abundance and diversity were greater than in other reaches and where colonization of Margaritiferidae, Lampsilini, and Quadrulini exceeded extirpation. The exact reasons mussel diversity and abundance have remained robust in this 30- mile reach is uncertain, but the reach is associated with increased gradients, few long pools, and vertical rock faces, all of which are preferable for mussels. Complete loss of mussel communities at eight sites (16%) with relatively diverse historical assemblages was attributed to physical habitat changes including bank erosion, unstable substrate, and sedimentation. Mussel conservation efforts, including restoring and protecting riparian habitats, limiting the effects of in-stream sand and gravel mining, monitoring and controlling invasive species, and protecting water quality, may be warranted in the Meramec River basin.

Missouri↗
USGS1989

A comparison of aquatic macrophyte communities in regulated and non-regulated lakes, Voyageurs National Park and Boundary Waters Canoe Area, Minnesota

The effects of water-level regulation on aquatic macrophyte communities, individual plant species, and potential faunal habitat were investigated in a study of two regulated lakes and an unregulated lake in northern Minnesota. Water levels in Rainy Lake and Namakan Reservoir in Voyageurs National Park are regulated by dams. Natural annual fluctuations of 1.8 m are replaced with fluctuations of 1.1 m in Rainy Lake and 2.7 m in the five lakes that comprise Namakan Reservoir. In addition, springtime peaking of water levels in Namakan Reservoir is delayed by one month. After reaching the peak, water levels in the regulated lakes are held at that level through the summer and allowed to gradually decline through autumn and winter. This study was conducted by estimating the cover of each plant species in randomly placed quadrats along transects that followed depth contours in the lakes. These contours were selected to represent different plant habitats, as defined by the timing and duration of flooding and dewatering in unregulated Lac La Croix. Detrended correspondence analysis showed that the macrophyte communities at all depths of the regulated lakes differed from those in the unregulated lake. The differences were more profound in deeper parts of the littoral zone. Lac La Croix contained taxonomically and structurally diverse plant communities at all depths, maximizing faunal habitat. The greatest effect of the regulation on Rainy Lake was along transects at the depth that is never dewatered. There were only four taxa present; they were all erect aquatics that extended through the entire water column and offered little structurally diverse faunal habitat. The greatest effect of regulation on Namakan Lake was along transects at the depth where drawdown occurs in early winter and disturbance results from ice formation in the sediments. Rosette and mat-forming species were dominant, providing minimal faunal habitat. The hydrologic regime at Lac La Croix results in intermediate disturbance that maintains high diversity. There is too little disturbance from water-level fluctuations in Rainy Lake and too much disturbance in Namakan Reservoir, resulting in reduced diversity in both cases. The macrophyte communities of the regulated lake systems would benefit from a return to more natural hydrologic regimes. Namakan Reservoir should be regulated to reach its peak water level at the beginning of June, summer drawdowns should occur at both Rainy Lake and Namakan Reservoir, and the amplitude of annual drawdowns should vary between years but approximate 1.8 m. These hydrologic conditions should, over time, result in more diverse macrophyte communities and more diverse faunal habitat throughout the littoral zone of the regulated lakes.

Research/Resources Management↗