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At least 649 records · Page 36Linked to original sources
USGS2000

Impacts of toxic thresholds of sediment-associated contaminants to robust redhorse (Moxostoma robustum) in the Lower Oconee River

The robust redhorse is a ?Species-at-Risk? in the lower Oconee River, GA. The population is composed of aging adults with little natural recruitment. Factors contributing to the loss of early-life stages are unknown, but contaminants associated with fine sediments may play a role. The objectives of this study were to determine toxicities of sediments and pore waters from the Oconee River to early-life stages of robust redhorse and to establish toxic thresholds of metals (Cd, Cu, Mn, Zn) and ammonia, elements potentially threatening this species. Depositional sediments were collected from the only known spawning site and three sites downstream of major tributaries. Sediment pore waters were extracted in the laboratory from all sites and in situ at two sites. Toxicity tests with sediments, pore waters and metal solutions were initiated with eggs, yolk-sac fry and swim-up fry to determine effects on the life stage initially exposed as well as effects manifested in later developmental stages. Survival and growth were test endpoints, and toxicity was observed in both sediments and pore waters. Although the yolk- sac stage was the most sensitive across all tests, sediment toxicity was elicited only in tests initiated with eggs that developed through the yolk-sac stage. Toxicity appeared to be due to Mn in sediment and pore water exposures, but was more prevalent in pore waters. Sediment handling and the associated effects on redox potential contributed to the elevated concentrations of Mn in pore waters. Pore waters extracted in situ had significantly less Mn and were less toxic than laboratory-extracted pore waters. These data suggest that sediment-associated Mn may impact early-life stages of robust redhorse in the Oconee River.

Society of Environmental Toxicology and Chemistry,↗
USGS2024

Snake River Fall Chinook Salmon research and monitoring

In Chapter 1, we report on development and application of an integrated population model (IPM) for the natural-origin fall Chinook salmon population upstream of Lower Granite Dam. This year’s efforts represent the third update to the model. Initial efforts focused on generating juvenile and adult abundance estimates, with estimates of uncertainty, for informing the life-cycle model and estimating the effects of covariates on key demographic parameters. The goals of this year’s report are to 1) describe the modifications and advances made since the previous report, 2) to annually update and report the abundance estimates and other quantities used in the model, 3) to provide annual estimates of population parameters estimated by the IPM, and 4) to outline the next year’s tasks for advancing and/or applying the model. Since our last report on the life-cycle model, we have made a number of changes including: 1) incorporating jack abundance and age-structure data into the observation model, 2) changing smolt-to-adult survival (SAR) for subyearling and yearling to partial SARs that represent the joint probability surviving and entering the ocean at a given juvenile age, 3) combining age categories for rarely observed ages, 4) using scale data from unmarked fish to estimate age structure, and 5) generating composite life-cycle demographic parameters (cumulative capacity and productivity) from stage-specific parameters. We also generated juvenile abundance estimates, extended the model to include three additional brood years (1992– 2021), and ran the model to forecast returns to Lower Granite in 2022. For posterior medians of life stage-specific parameters, we estimated a mean productivity of 438 natural-origin juvenile recruits per female spawner, a capacity of 1.36 million juveniles, and a mean smolt-to-adult survival (SAR) of 1.2%. We detected strong density-dependent regulation, with juvenile recruits per spawner declining to about 50 juvenile recruits per female spawner at high spawner abundance. Across the entire life cycle, these stage-specific parameters resulted in a median cumulative intrinsic productivity of 1.93 adult female recruits per female spawner and a median equilibrium abundance of 2,851 female spawners (7,842 total spawners). Annual juvenile productivity varied from about 250–1,000 juveniles per spawner but displayed no temporal trends or patterns. For the three most recent brood years added to the model, recruits per spawner were higher than average but well within the range of uncertainty observed over the entire time series. In contrast to juvenile recruitment variability, SAR varied considerably among years and exhibited two periods of high survival (1996–2001 and 2007–2012) when SAR ranged from 2% to 6% and cumulative productivity ranged from 2 to 8 recruits per spawner. Partial SARs revealed that yearling outmigrants contributed substantially to the high SARs in the first high-survival period, but the second period was dominated by subyearlings. Yearlings contributed >30% to SAR in most years prior to 2007, and <30% since 2007. Our two-stage IPM provides a wealth of information about population dynamics affecting two key life-stage transitions (spawner to juvenile, and juvenile to spawner) centered on passage at Lower Granite Dam. By summarizing these stage-specific demographic parameters across the entire life cycle, this information will be useful for informing the recovery status of this threatened population. Whereas previous versions introduced hydrosystem and ocean covariates into the model, this phase of model development focused on solidifying the underlying model structure by introducing the concept of partial SARs and developing composite productivity and capacity as a function of underlying stage-specific parameters. Given this advancement, our next steps are to re-incorporate covariates into the model, specifically to understand how different factors affect partial SARs of subyearling and yearlings. Longer term model developments include:1) incorporating hatchery fish to explicitly estimate their survival as an alternative method for estimating natural-origin age composition, 2) expanding the model’s structure to include the three major spawning aggregates, 3) more explicitly modeling hydrosystem effects including transportation, and 4) using the model to assess retrospective and prospective management actions. In 2022, the U.S. Geological Survey (USGS) focused adult salmon survey efforts in the Snake River on deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses. We use used a boat-mounted underwater video camera to count 99 deepwater redds at 16 of the 29 sites surveyed. Redd depths averaged 4.4 m. In conjunction with the Idaho Power Company, we collected genetic samples from 318 live fall Chinook salmon (Oncorhynchus tshawytscha) and 19 carcasses at 40 unique geographic locations that spanned 91 river kilometers. Eighty fish were collected at three sites (High Range [rkm 332.3], Dug Bar [rkm 315.4], and Three Creek [rkm 384.0]), which accounted for 23% of all collected fish in 2022. Most (333 fish) post-spawned salmon were collected from early to mid-November just after the peak of spawning. A summary of 2021 PBT results produced by the Idaho Power Company can be found in Appendix A.2. Beach seining and PIT tagging of subyearling fall Chinook salmon was conducted in Snake and Salmon rivers to obtain information on population metrics and growth as well as to provide data for ongoing life-cycle modeling. In the Snake River, we collected 7,496 subyearlings, tagged 4,139, and recaptured 502 (12.1%). Using 8-mm tags in 45–49-mm fish allowed us to represent an additional 25% of the juvenile population through PIT tagging beyond just using standard 9- and 12-mm tags. In the Salmon River, we captured 206 natural subyearlings with the majority (52%) of fish being captured at two sites: rkm 20 and 26. We tagged 145 subyearlings and recaptured 9 fish. Many of the subyearlings we tagged in the Snake River were detected passing Lower Granite Dam, but only 4 fish tagged in the Salmon River were detected. In total we detected 484 (11.3%) tagged fish at Lower Granite Dam, and detection rates varied by tag size and passage route. More subyearlings were detected passing via the removable spill weir (RSW) earlier in the season while more fish were detected passing through the juvenile fish bypass system (JBS) earlier in the season while more fish were detected passing via the removable spill weir (RSW) later in the season. In general, fish tagged with 12-mm PIT tags had higher detection rates than fish tagged with smaller tags. Survival to Lower Granite Dam was low and ranged from 0.22 to 0.36. Season-wide, growth of subyearlings was higher in the lower reach than in the upper reach of the Snake River.

Idaho, Oregon, Washington↗
USGS2016

Hierarchical animal movement models for population-level inference

New methods for modeling animal movement based on telemetry data are developed regularly. With advances in telemetry capabilities, animal movement models are becoming increasingly sophisticated. Despite a need for population-level inference, animal movement models are still predominantly developed for individual-level inference. Most efforts to upscale the inference to the population level are either post hoc or complicated enough that only the developer can implement the model. Hierarchical Bayesian models provide an ideal platform for the development of population-level animal movement models but can be challenging to fit due to computational limitations or extensive tuning required. We propose a two-stage procedure for fitting hierarchical animal movement models to telemetry data. The two-stage approach is statistically rigorous and allows one to fit individual-level movement models separately, then resample them using a secondary MCMC algorithm. The primary advantages of the two-stage approach are that the first stage is easily parallelizable and the second stage is completely unsupervised, allowing for an automated fitting procedure in many cases. We demonstrate the two-stage procedure with two applications of animal movement models. The first application involves a spatial point process approach to modeling telemetry data, and the second involves a more complicated continuous-time discrete-space animal movement model. We fit these models to simulated data and real telemetry data arising from a population of monitored Canada lynx in Colorado, USA.

Environmetrics↗
USGS2021

Stopover ecology of red knots in southwestern James Bay during southbound migration

Many shorebirds rely on small numbers of staging sites during long annual migrations. Numerous shorebird species are declining and understanding the importance of these staging sites is important for successful conservation. We surveyed endangered rufa red knots ( Calidris canutus rufa ) staging in James Bay, Ontario, Canada, during southbound migration in 2017 and 2018. We used mark‐resight data and count data in an integrated Bayesian analysis to quantify migration phenology, estimate passage population size, and model the age structure of the stopover population. Many adult red knots arrived in James Bay in a single wave in early August in 2017, whereas adult red knots arrived in multiple smaller waves in July and mid‐August in 2018. These waves may correspond with breeding phenology where more red knots bred successfully and arrived in one large event in 2017 and the higher number of earlier arrivals in July 2018 may have been failed breeders. We included a binomial generalized linear model in the integrated analysis to estimate that 20% and 10% of staging red knots were juveniles in 2017 and 2018, respectively. In future applications, this method could provide a metric to assess breeding performance and develop our understanding of its role in population declines. Overall, we estimated that up to 23% of the estimated rufa red knot population staged in southwestern James Bay for an average of 10–12 days. The region is a key staging site for endangered red knots and could be included in conservation planning.

James Bay↗
USGS2011

Changes in nutrient dynamics of midcontinent greater white-fronted geese during spring migration

Waterfowl and other migratory birds commonly store nutrients at traditional staging areas during spring for later use during migration and reproduction. We investigated nutrient‐storage dynamics in the midcontinent population of greater white‐fronted geese ( Anser albifrons ; hereafter white‐fronted geese) at spring staging sites in the Rainwater Basin of Nebraska during February–April and in southern Saskatchewan during April–May, 1998 and 1999. In Nebraska, lipid content of white‐fronted geese did not increase, and protein content changed little over time for most age and sex categories. In Saskatchewan, lipids increased 11.4 g/day (SE = 1.7) and protein content increased 1.6 g/day (SE = 0.6) in the sample of adult geese collected over a 3‐week period. A study conducted during 1979–1980 in the Rainwater Basin reported that white‐fronted geese gained 8.8–17.7 g of lipids per day during spring, differing greatly from our results 2 decades later. In addition, lipid levels were less in the 1990s compared to spring 1980 for adult geese nearing departure from staging sites in Saskatchewan. This shift in where geese acquired nutrient stores from Nebraska to more northern staging sites coincided with a decrease in availability of waste corn in Nebraska, their primary food source while staging at that stopover site, and an increase in cultivation of high‐energy pulse crops in Saskatchewan. White‐fronted geese exhibited flexibility in nutrient dynamics during spring migration, likely in response to landscape‐level variation in food availability caused by changes in agricultural trends and practices. Maintaining a wide distribution of wetlands in the Great Plains may allow spring‐staging waterfowl to disperse across the region and facilitate access to high‐energy foods over a larger cropland base.

Nebraska, Saskatchewan↗
USGS2020

Comparison of machine learning approaches used to identify the drivers of Bakken oil well productivity

Geologists and petroleum engineers have struggled to identify the mechanisms that drive productivity in horizontal hydraulically fractured oil wells. The machine learning algorithms of Random Forest (RF), gradient boosting trees (GBT) and extreme gradient boosting (XGBoost) were applied to a dataset containing 7311 horizontal hydraulically fractured wells drilled into the middle member of the Bakken Formation from 2010 through 2017. The initial goal is to use these data‐driven machine learning algorithms to identify the most important explanatory predictors of well productivity within nine subareas and the composite area. Predictor variables representing initial gas production, the initial 180‐day water cut, and vertical depth vary spatially and are identified with geologically favorable areas. Well‐completion predictors include the well lateral length, number of fracture stages, volume of proppant per stage, and the volume of injected fluids per stage. The performance of methods is compared based on a common test sample. The analysis then examines the comparative predictive performance of the three algorithms for 1330 wells that had initiated production after the initial 7311 well sample had been producing. The computations of predictor importance identified the initial 180‐day water cut and the 30‐day initial gas production predictors as having a dominant influence in most subareas and for the composite area. The relative importance of well completion predictor variables, that is, the number of fracture stages per well, volume of injected proppant per stage, volume of injected fluids per stage, and lateral length, varied considerably across the subareas. For the common test or holdout sample, the models calibrated with the XGBoost algorithm had superior predictive power. The predictive power of all the algorithms trained on the data from the original sample suffered some loss when tested with a sample of wells that had started production after the end of that period. Implications of the empirical findings and strategies to mitigate loss of predictive power are discussed in the concluding section.

Statistical Analysis and Data Mining↗
USGS1992

Ages, rare-earth element enrichment, and petrogenesis of tholeiitic and alkalic basalts from Kahoolawe Island, Hawaii

Kahoolawe Island, Hawaii (18×11 km), is a basaltic shield volcano with caldera-filling lavas, seven identified postshield vents, and at least two occurrences of apparent rejuvenated-stage eruptive. We examined 42 samples that represent all stages of Kahoolawe volcano stratigraphy for their petrography, whole-rock major-and trace-element contents, mineral compositions, and K−Ar ages. The two oldest shield samples have an average age of 1.34±0.08 Ma, and four postshield samples (3 are alkalic) average 1.15±0.03 Ma; ages of 1.08 and 0.99 Ma for two additional tholeiitic samples probably are minimum ages. Whole-rock major- and trace-element and mineral compositions of Kahoolawe shield and caldera-fill laves are generally similar to the lavas forming Kilauea and Mauna Loa tholeiitic shields, but in detail, Kahoolawe shield lavas have distinctive compositions. An unusual aspect of many postshield Ka-hoolawe lavas is anomalously high REE and Y abundances (up to 200 ppm La and 175 ppm Y) and negative Ce anomalies. These enrichments reflect surficial processes, where weathering and soil development promoted REE-Y transport at the weathering front. Major element abundances (MgO, 10–6 wt.%) for shield and caldera-fill basalts are consistent with fractionation of ol+px+pl in frequently replenished magma reservoirs. In general, tholeiitic basalts erupted from late vents are higher in SiO 2 than the shield lavas, and temporal differences in parental magma compositions are the likely explanation. Alkalic basalts that erupted from vents are comparable in composition to those at other Hawaiian volcanoes. Trace-element abundance ratios indicate that alkalic basalts represent either relatively lower degrees of melting of the shield source or a distinct source. Apparent rejuvenated-stage basalts (i.e., emplaced after substantial Kahoolawe erosion) are tholeiitic, unlike the rejuvenated-stages at other Hawaiian volcanoes (alkalic). Kahoolawe, like several other Hawaiian volcanoes, has intercalated tholeiitic and alkalic basalts in the postshield stage, but it is the only volcano that appears to have produced tholeiitic rejuvenated-stage lavas.

Hawaii↗
USGS2006

Geology and geochemistry of jasperoids from the Gold Bar district, Nevada

Gold Bar is one of several Carlin-type gold mining districts located in the Battle Mountain-Eureka trend, Nevada. It is composed of one main deposit, Gold Bar; five satellite deposits; and four resources that contain 1.6 Moz (50 t) of gold. All of the deposits and resources occur at the intersection of north-northwest- and northeast-trending high-angle faults in slope facies limestones of the Devonian Nevada Group exposed in windows through Ordovician basin facies siliciclastic rocks of the Roberts Mountains allochthon. Igneous intrusions and magnetic anomalies are notably absent. The Gold Bar district contains a variety of discordant and stratabound jasperoid bodies, especially along the Wall Fault zone, that were mapped and studied in some detail to identify the attributes of those most closely associated with gold ore and to constrain genetic models. Four types of jasperoids, J0, J1, J2, and J3, were distinguished on the basis of their geologic and structural settings and appearance. Field relations suggest that J0 formed during an early event. Petrographic observations, geochemistry, and ??18O values of quartz suggest it was overprinted by the hydrothermal event that produced ore-related J1, J2, and J3 jasperoids and associated gold deposits. The greater amount of siliciclastic detritus present in J0 jasperoids caused them to have higher ??18O values than J1,2,3 jasperoids hosted in underlying limestones. Ore-related jasperoids are composed of main-ore-stage replacements and late-ore-stage open-space filling quartz with variable geochemistry and an enormous range of ??18O values (24.5 and -3.7???). Jasperoids hosted in limestones with the most anomalous Au, Ag, Hg, ??(As, Sb, Tl) concentrations and the highest ??18O values are associated with the largest deposits. The 28??? range of jasperoid ??18O values is best explained by mixing between an 18O-enriched fluid and an 18O-depleted fluid. The positive correlation between the sizes of gold deposits and the ??18O composition of jasperoids indicates that gold was introduced by the 18O-enriched fluid. The lowest calculated ??18O value for water in equilibrium with late-ore-stage quartz at 200??C (-15???) and the measured ??D value of fluid inclusion water extracted from late-ore-stage orpiment and realgar (-116???) indicate that the 18O-depleted fluid was composed of relatively unexchanged meteoric water. The source of the 18O-enriched ore fluid is not constrained. The ??34S values of late-ore-stage realgar, orpiment, and stibnite (5.7-15.5???) and barite (31.5-40.9???) suggest that H2S and sulfate were derived from sedimentary sources. Likewise, the ??13C and ??18O values of late-stage calcite (-4.8 to 1.5??? and 11.5 to 17.4???, respectively) suggest that CO2 was derived from marine limestones. Based on these data and the apparent absence of any Eocene intrusions in the district, Gold Bar may be the product of a nonmagmatic hydrothermal system. ?? Springer-Verlag 2006.

Mineralium Deposita↗
USGS2019

The 2016 Lamplugh rock avalanche, Alaska: Deposit structures and emplacement dynamics

Supraglacial landslides result from the catastrophic failure of periglacial rock slopes and deposit large volumes of rock and ice onto the glacier surface. The most remarkable features of these landslides are their prominent long flowbands and a high mobility that exceeds that of their counterparts in other environments. Based on field surveys, high-resolution digital elevation models, and continuous seismic data, we show that the emplacement dynamics of the 2016 rock avalanche on Lamplugh Glacier were characterized by two distinct stages. During the first stage, the debris traveled about 5 km from the base of the slope. Clear long-period seismic signals during this stage record strong interactions of the rock avalanche debris with the ground, suggesting dynamic processes such as grain collisions and fragmentation. The second stage was essentially aseismic at long periods and dominated by low-friction sliding at slow deceleration rates. A higher density of flowbands and increased entrainment of snow from the runout path characterize the morphology of this second-stage distal deposition. Around the margins, lobes are offset by up to 400 m along major strike-slip faults, whereas within individual lobes, offsets between flowbands are much less pronounced (0 to < 10 m). The two-stage emplacement model may explain the higher apparent mobility of supraglacial landslides.

Alaska↗
USGS1990

Modeling the effects of serial off-gas reuse on the performance of a hooded surface oxygen obsorption system

A numerical model was used to evaluate the performance of a surface agitation system designed to contact commercial oxygen with water. The modeled system was unique in that oxygen-rich off-gas, normally discharged to the atmosphere, was directed in serial reuse through additional contact stages receiving untreated water. A correlation between the agitator mass-transfer coefficient and power demand, needed to calibrate the model, was established using a single-stage (37 W) contactor of 1·18 m 3 capacity. Additional tests, conducted with both single and three-stage equipment, verified model assumptions and performance predictions. Simulation runs indicated oxygen flow or power input required to meet a given effluent dissolved gas criterion can be substantially reduced by the off-gas reuse step; for example, to achieve an effluent dissolved oxygen of 24·1 mg/litre with a single stage agitator the oxygen feed rate needed was 61·5% greater than that required by a six-stage system receiving the same total power input (standard aeration efficiency, 0·5 kg/kW h; water flow rate, 100 litre/min; influent dissolved oxygen, 9·08 mg/litre at 15°C). The savings achieved increased with (1) greater target effluent dissolved oxygen concentrations, (2) lower oxygen feed rates, (3) higher input power levels, and (4) number of contact stages.

Aquacultural Engineering↗
USGS2009

Predator avoidance performance of larval fathead minnows (Pimephales promelas) following short-term exposure to estrogen mixtures

Aquatic organisms exposed to endocrine disrupting compounds (EDCs) at early life-stages may have reduced reproductive fitness via disruption of reproductive and non-reproductive behavioral and physiological pathways. Survival to reproductive age relies upon optimal non-reproductive trait expression, such as adequate predator avoidance responses, which may be impacted through EDC exposure. During a predator–prey confrontation, larval fish use an innate C-start escape behavior to rapidly move away from an approaching threat. We tested the hypotheses that (1) larval fathead minnows exposed to estro gens, a primary class of EDCs, singularly or in mixture, suffer a reduced ability to perform an innate C-start behavior when faced with a threat stimulus; (2) additive effects will cause greater reductions in C-start behavior; and (3) effects will differ among developmental stages. In this study, embryos (post-fertilization until hatching) were exposed for 5 days to environmentally relevant concentrations of estrone (E1), 17-estradiol (E2), and 17-ethinylestradiol (EE2) singularly and in mixture. Exposed embryos were allowed to hatch and grow in control well water until 12 days old. Similarly, post-hatch fathead minnows were exposed for 12 days to these compounds. High-speed (1000 frames/s) video recordings of escape behavior were collected and transferred to National Institutes of Health Image for frame-by-frame anal- ysis of latency period, escape velocity, and total escape response (combination of latency period and escape velocity). When tested 12 days post-hatch, only E1 adversely affected C-start performance of larvae exposed as embryos. Conversely, larvae exposed for 12 days post-hatch did not exhibit altered escape responses when exposed to E1, while adverse responses were seen in E2 and the estrogen mixture. Ethinylestradiol exposure did not elicit changes in escape behaviors at either developmental stage. The direct impact of reduced C-start performance on survival, and ultimately, reproductive fitness provides an avenue to assess the ecological relevance of exposure in an assay of relatively short duration.

Aquatic Toxicology↗
USGS2022

Vertical movement of soluble carbon and nutrients from biocrusts to subsurface mineral soils

Dryland ecosystems can be constrained by low soil fertility. Within drylands, the soil nutrient and organic carbon (C) cycling that does occur is often mediated by soil surface communities known as biological soil crusts (biocrusts), which cycle C and nutrients in the top ca. 0–2 cm of soil. However, the degree to which biocrusts are influencing soil fertility and biogeochemical cycling in deeper, subsurface mineral soils is unclear. The movement of dissolved resources from biocrusts to deeper soil layers in leachate may be one of the main mechanisms through which biocrust fertility is transferred downward towards deeper microbial communities and plant roots occurring within mineral soil. Here we examined the role of biocrust leachate in contributing to subsurface nutrient and soluble C pools and subsurface microbial cycling. We collected biocrusts from three biocrust successional stages and explored resource pools in situ at multiple soil depths, while collecting leachate and measuring nutrient and organic C concentrations and metabolite composition from each successional stage in the laboratory. After four leachate collections, we conducted an incubation of mineral soil collected from below each biocrust successional stage to measure heterotrophic microbial CO 2 flux and biomass. Overall, our findings observed that the degree of nutrient and C connectivity between biocrusts and the sub-crust mineral soil depended on the biocrust successional stage and the element being considered, and the influence of biocrust successional stage on mineral soil CO 2 flux is likely related to long-term resource build up. Together, our results suggest that the influence of biocrust leachate on subsurface mineral soil is complex and context dependent, but, over longer time periods and at later successional stages, can have measurable effects on dryland soil biogeochemical cycling with feedbacks to resource availability and CO 2 flux.

Geoderma↗
USGS2014

The Early Jurassic Bokan Mountain peralkaline granitic complex (southeastern Alaska): geochemistry, petrogenesis and rare-metal mineralization

The Early Jurassic (ca. 177 Ma) Bokan Mountain granitic complex, located on southern Prince of Wales Island, southernmost Alaska, cross-cuts Paleozoic igneous and metasedimentary rocks of the Alexander terrane of the North American Cordillera and was emplaced during a rifting event. The complex is a circular body (~3 km in diameter) of peralkaline granitic composition that has a core of arfvedsonite granite surrounded by aegirine granite. All the rock-forming minerals typically record a two-stage growth history and aegirine and arfvedsonite were the last major phases to crystalize from the magma. The Bokan granites and related dikes have SiO 2 from 72 to 78 wt. %, high iron (FeO (tot) ~3-4.5 wt. %) and alkali (8-10 wt.%) concentrations with high FeO (tot) /(FeO (tot) +MgO) ratios (typically >0.95) and the molar Al 2 O 3 /(Na 2 O+K 2 O) ratio <1. The granitic rocks are characterized by elevated contents of rare earth elements (REE), Th, U and high field strength elements (HFSE) and low contents of Ca, Sr, Ba and Eu, typical of peralkaline granites. The granites have high positive ε Nd values which are indicative of a mantle signature. The parent magma is inferred to be derived from an earlier metasomatized lithospheric mantle by low degrees of partial melting and generated the Bokan granitic melt through extensive fractional crystallization. The Bokan complex hosts significant rare-metal (REE, Y, U, Th, Nb) mineralization that is related to the late-stage crystallization history of the complex which involved the overlap of emplacement of felsic dikes, including pegmatite bodies, and generation of orthomagmatic fluids. The abundances of REE, HFSE, U and Th as well as Pb and Nd isotopic values of the pluton and dikes were modified by orthomagmatic hydrothermal fluids highly enriched in the strongly incompatible trace elements, which also escaped along zones of structural weakness to generate rare-metal mineralization. The latter was deposited in two stages: the first relates to the latest stage of magma emplacement and is associated with felsic dikes that intruded along the faults and shear deformations, whereas the second stage involved ingress of hydrothermal fluids that both remobilized and enriched the initial magmatic mineralization. Mineralization is mostly composed of new minerals. Fluorine complexing played a role during the transportation of REE and HFSE in hydrothermal fluids and oxygen isotopes in the granites and quartz veins negate the significant incursion of an external fluid and support a dominantly orthomagmatic hydrothermal system. Many other REE-HFSE deposits hosted by peralkaline felsic rocks (nepheline syenites, peralkaline granites and peralkaline trachytes) were formed by a similar two stage process.

Alaska↗
USGS2011

Magmatic-vapor expansion and the formation of high-sulfidation gold deposits: Structural controls on hydrothermal alteration and ore mineralization

High-sulfidation copper–gold lode deposits such as Chinkuashih, Taiwan, Lepanto, Philippines, and Goldfield, Nevada, formed within 1500 m of the paleosurface in volcanic terranes. All underwent an early stage of extensive advanced argillic silica–alunite alteration followed by an abrupt change to spatially much more restricted stages of fracture-controlled sulfide–sulfosalt mineral assemblages and gold–silver mineralization. The alteration as well as ore mineralization stages of these deposits were controlled by the dynamics and history of syn-hydrothermal faulting. At the Sulfate Stage, aggressive advanced argillic alteration and silicification were consequent on the in situ formation of acidic condensate from magmatic vapor as it expanded through secondary fracture networks alongside active faults. The reduction of permeability at this stage due to alteration decreased fluid flow to the surface, and progressively developed a barrier between magmatic-vapor expansion constrained by the active faults and peripheral hydrothermal activity dominated by hot-water flow. In conjunction with the increased rock strength resulting from alteration, subsequent fault-slip inversion in response to an increase in compressional stress generated new, highly permeable fractures localized by the embrittled, altered rock. The new fractures focused magmatic-vapor expansion with much lower heat loss so that condensation occurred. Sulfide Stage sulfosalt, sulfide, and gold–silver deposition then resulted from destabilization of vapor phase metal species due to vapor decompression through the new fracture array. The switch from sulfate to sulfide assemblages is, therefore, a logical consequence of changes in structural permeability due to the coupling of alteration and fracture dynamics rather than to changes in the chemistry of the fluid phase at its magmatic source.

Ore Geology Reviews↗
USGS2014

Toxicity and accumulation of silver nanoparticles during development of the marine polychaete Platynereis dumerilii

Pollutants affecting species at the population level generate ecological instability in natural systems. The success of early life stages, such as those of aquatic invertebrates, is highly affected by adverse environmental conditions. Silver released into the environment from emerging nanotechnology represents such a threat. Sediments are sinks for numerous pollutants, which aggregate and/or associate with depositing suspended particles. Deposit feeder such as the annelid Platynereis dumerilii, which has a large associated literature on its development, is an excellent model organism for exposure studies in coastal environments. We exposed eggs, larvae, juveniles and adults of P. dumerilii to various concentrations of citrate (cit-Ag NPs) or humic acid (HA-Ag NPs) capped silver nanoparticles (Ag NPs) as well to dissolved Ag (added as AgNO3). We showed that mortality and abnormal development rate increased with younger life stages. While adults and juvenile were the most tolerant life stages, fertilized eggs were highly sensitive to AgNO3, cit-Ag NPs and HA-Ag NPs. Exposures to HA-Ag NPs triggered the highest cute toxicity responses in P. dumerilii and in most cases both Ag NPs were more toxic than AgNO3. Uptake rate of HA-Ag NPs in adult worms was also higher than from other Ag forms, consistent with toxicity to other life stages. The early stages of the life cycle of marine coastal organisms are more affected by Ag NPs than the juvenile or adult life stages, indicating that exposure experiments at the larval level contribute to realistic eco-toxicological studies in aquatic environments.

Science of the Total Environment↗
USGS2003

Changes in homologous and heterologous gap junction contacts during maturation-inducing hormone-dependent meiotic resumption in ovarian follicles of Atlantic croaker

Homologous (granulosa cell-granulosa cell) gap junction (GJ) contacts increase in ovarian follicles of Atlantic croaker (Micropogonias undulatus) during the early (first) stage of maturation, but their profile during the second stage [i.e., during maturation-inducing hormone (MIH)-mediated meiotic resumption] is unknown. The profile of homologous GJ contacts during the second stage of maturation in croaker follicles was examined in this study and compared to that of heterologous (granulosa cell-oocyte) GJ, for which changes have been previously documented. Follicles were incubated with human chorionic gonadotropin to induce maturational competence (first stage), and then with MIH to induce meiotic resumption. The follicles were collected for examination immediately before and after different durations of MIH exposure until the oocyte had reached the stage of germinal vesicle breakdown (GVBD; index of meiotic resumption). Ultrathin sections were observed by transmission electron microscopy, and homologous and heterologous GJ contacts were quantified along a 100-??m segment of granulosa cell-zona radiata complex per follicle (three follicles/time/fish, n=3 fish). Relatively high numbers of both types of GJ were observed before and after the first few hours of MIH exposure (up to the stage of oil droplet coalescence). GJ numbers declined during partial yolk globule coalescence (at or near GVBD) and were just under 50% of starting values after the completion of GVBD (P<0.05). These results confirm earlier observations that GVBD temporally correlates with declining heterologous GJ contacts, and for the first time in teleosts show that there is a parallel decline in homologous GJ. The significance of the changes in homologous and heterologous GJ is uncertain and deserves further study. ?? 2003 Elsevier Science (USA). All rights reserved.

General and Comparative Endocrinology↗
USGS1998

Developmental geology of coalbed methane from shallow to deep in Rocky Mountain basins and in Cook Inlet-Matanuska Basin, Alaska, USA and Canada

The Rocky Mountain basins of western North America contain vast deposits of coal of Cretaceous through early Tertiary age. Coalbed methane is produced in Rocky Mountain basins at depths ranging from 45 m (150 ft) to 1981 m (6500 ft) from coal of lignite to low-volatile bituminous rank. Although some production has been established in almost all Rocky Mountain basins, commercial production occurs in only a few. despite more than two decades of exploration for coalbed methane in the Rocky Mountain region, it is still difficult to predict production characteristics of coalbed methane wells prior to drilling. Commonly cited problems include low permeabilities, high water production, and coals that are significantly undersaturated with respect to methane. Sources of coalbed gases can be early biogenic, formed during the early stages of coalification, thermogenic, formed during the main stages of coalification, or late stage biogenic, formed as a result of the reintroduction of methane-gnerating bacteria by groundwater after uplift and erosion. Examples of all three types of coalbed gases, and combinations of more than one type, can be found in the Rocky Mountain region. Coals in the Rocky Mountain region achieved their present ranks largely as a result of burial beneath sediments that accumulated during the Laramide orogeny (Late Cretaceous through the end of the eocene) or shortly after. Thermal events since the end of the orogeny have also locally elevated coal ranks. Coal beds in the upper part of high-volatile A bituminous rank or greater commonly occur within much more extensive basin-centered gas deposits which cover large areas of the deeper parts of most Rocky Mountain basins. Within these basin-centered deposits all lithologies, including coals, sandstones, and shales, are gas saturated, and very little water is produced. The interbedded coals and carbonaceous shales are probably the source of much of this gas. Basin-centered gas deposits become overpressured from hydrocarbon generation as they form, and this overpressuring is probably responsible for driving out most of the water. Sandstone permeabilities are low, in part because of diagenesis caused by highly reactive water given off during the early stages of coalification. Coals within these basin-centered deposits commonly have high gas contents and produce little water, but they generally occur at depths greater than 5000 ft and have low permeabilities. Significant uplift and removal of overburden has occurred throughout the Rocky Mountain region since the end of the Eocene, and much of this erosion occurred after regional uplift began about 10 Ma. The removal of overburden generally causes methane saturation levels in coals to decrease, and thus a significant drop in pressure is required to initiate methane production. The most successful coalbed methane production in the Rocky Mountain region occurs in areas where gas contents were increased by post-Eocene thermal events and/or the generation of late-stage biogenic gas. Methane-generating bacteria were apparently reintroduced into the coals in some areas after uplift and erosion, and subsequent changes in pressure and temperature, allowed surface waters to rewater the coals. Groundwater may also help open up cleat systems making coals more permeable to methane. If water production is excessive, however, the economics of producing methane are impacted by the cost of water disposal.The Rocky Mountain basins of western North America contain vast deposits of coal of Cretaceous through early Tertiary age. Coalbed methane is produced in Rocky Mountain basins at depths ranging from 45 to 1981 m from coal of lignite to low volatile bituminous rank. Despite more than two decades of exploration for coalbed methane in Rocky Mountain region, it is still difficult to predict production characteristics of coalbed methane wells prior to drilling. Sources of coalbed gases can be early biogenic, formed during the main stages of coa

International Journal of Coal Geology↗
USGS2001

Developing a geomorphic approach for ranking watersheds for rehabilitation, Zuni Indian Reservation, New Mexico

As a result of past erosion problems on the Zuni Indian Reservation in western New Mexico, the US Congress in 1990 authorized the Zuni Tribe to begin a program for watershed rehabilitation. This paper describes an approach to rank the most appropriate watersheds for rehabilitation for the Zuni Reservation. The approach was based on data collected during a 3-year study on geomorphic and anthropogenic characteristics of the Rio Nutria Watershed, including data on (i) arroyo cross-sectional changes, (ii) erosion-control structures, and (iii) sheetwash erosion. Results of this 3-year study indicated that 61 of 85 channel cross-sections aggraded and channels with lower width-to-depth ratios eroded. Results on assessment of erosion-control structures, some dating back to the 1930's, indicated that 60% of earthen dams and 22% of rock-and-brush structures were breached or flanked in the Rio Nutria Watershed. Sheetwash erosion measured on five land-cover sites (sagebrush, pasture, chained pin??on and juniper, unchained pin??on and juniper, and ponderosa pine) indicated chained pin??on and juniper sites and pasture sites had the highest volume-weighted sediment concentrations of 13,000 and 9970 ppm, respectively. Based on interpretations of the 3-year study in the Rio Nutria Watershed, a two-stage approach was developed to rank the most appropriate watersheds for rehabilitation on the Zuni Reservation. In the first stage, the reservation was divided into eight major watersheds, which were ranked according to the most potential for erosion. In the second stage, the watershed with the most potential for erosion was divided into sub-basins, which were ranked according to the most potential for erosion. Quantitative and qualitative information on physical and anthropogenic factors were used at each stage to rank the watersheds. Quantitative physical data included headcut density, percentage of bare ground, percentage of chained area, channel width-to-depth ratio, change in channel density from 1934 to 1988, and sheetwash erosion rates. Qualitative physical data included erosion rankings on the main channels, tributaries, and entire basins. Anthropogenic data included density of dirt roads and condition of erosion-control structures. A community survey and agricultural acreage were also used in the selection process. The first stage analysis resulted in the selection of the Rio Nutria Watershed as the most appropriate major watershed for rehabilitation. In the second stage, the Rio Nutria Watershed was divided into 15 sub-basins; the analysis indicated the highest priority sub-basins for rehabilitation were Benny Draw, Coal Mine Canyon Draw, and Garcia Draw.

Geomorphology↗