Geology ReportsSearch

SEARCH · Geology Reports

Results for “Community Science”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 595 records · Page 33Linked to original sources

Designing a solution to enable agency-academic scientific collaboration for disasters

As large-scale environmental disasters become increasingly frequent and more severe globally, people and organizations that prepare for and respond to these crises need efficient and effective ways to integrate sound science into their decision making. Experience has shown that integrating nongovernmental scientific expertise into disaster decision making can improve the quality of the response, and is most effective if the integration occurs before, during, and after a crisis, not just during a crisis. However, collaboration between academic, government, and industry scientists, decision makers, and responders is frequently difficult because of cultural differences, misaligned incentives, time pressures, and legal constraints. Our study addressed this challenge by using the Deep Change Method, a design methodology developed by Stanford ChangeLabs, which combines human-centered design, systems analysis, and behavioral psychology. We investigated underlying needs and motivations of government agency staff and academic scientists, mapped the root causes underlying the relationship failures between these two communities based on their experiences, and identified leverage points for shifting deeply rooted perceptions that impede collaboration. We found that building trust and creating mutual value between multiple stakeholders before crises occur is likely to increase the effectiveness of problem solving. We propose a solution, the Science Action Network, which is designed to address barriers to scientific collaboration by providing new mechanisms to build and improve trust and communication between government administrators and scientists, industry representatives, and academic scientists. The Science Action Network has the potential to ensure cross-disaster preparedness and science-based decision making through novel partnerships and scientific coordination.

Ecology and Society

Opportunities to improve alignment with the FAIR Principles for U.S. Geological Survey data

In 2016, an interdisciplinary, international group of 53 scientists introduced a framework named “the FAIR Principles” for addressing 21st century scientific data challenges. The FAIR Principles are increasingly used as a guide for producing digital scientific products that are findable, accessible, interoperable, and reusable (FAIR), especially to enable use of such products in automated systems. Data aligned with the FAIR Principles can increase the efficiency of science integration capabilities such as those envisioned for the U.S. Geological Survey (USGS) Earth Monitoring, Analyses, and Projections (EarthMAP) initiative. The FAIR Principles clearly define the characteristics of reusable scientific products, but it is less clear how to facilitate consistency in achieving these characteristics across the Bureau. USGS data are produced by local research projects distributed over more than 100 centers in 7 regions. After data are approved for release, they could be managed in numerous repositories and online data systems. The diversity of USGS data is illustrated by the topical range of the USGS mission areas: Core Science Systems, Ecosystems, Energy and Minerals, Natural Hazards, and Water Resources. In the USGS context, realizing the EarthMAP vision for automated, predictive, integrated science that provides timely and actionable results involves providing knowledge and support services and developing the skills, infrastructure, and culture to enable Bureau-wide implementation of the FAIR Principles. In 2019, the USGS Community for Data Integration funded a project to convene a broadly representative workshop and produce recommendations to enable consistency with the FAIR Principles across the USGS. The workshop, held in Fort Collins, Colorado, in September 2019, brought together 28 participants for 3 days to engage with the FAIR Principles, analyze USGS use cases, and discuss the roles of data producers and managers, data storage and catalogs, value-added services, and policy makers in implementing the FAIR Principles. Workshop participants agreed that scientific reproducibility requires the extension of the FAIR Principles beyond measured data to include physical samples, research methods, software, and tools at the USGS. Workshop discussions focused on how the USGS can implement the FAIR Principles by supporting research teams in creating data, metadata, and other scientific products and also by supporting enterprise systems that maintain and leverage the products’ consistency with the FAIR Principles. The resulting FAIR roadmap of recommendations describes nine proposed interdependent strategies that could be achieved by coordinated actions taken by different parts of the USGS. A proposed early action would be the creation of a coordinating council that includes representatives from the groups engaged in activities consistent with better alignment with the FAIR Principles. The nine proposed strategies, which are presented in more detail in this roadmap report, focus on enabling improvements to individual data products, providing infrastructure, and structuring administrative activities to support an organizational culture that values the FAIR Principles.

Open-File Report

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2024

A comprehensive understanding of fish populations and their interactions is the cornerstone of modern fishery management and the basis for Lake Erie’s Fish Community Objectives (FCOs) developed in 2020 (Francis et al. 2020). The 2024 U.S. Geological Survey (USGS) Lake Erie Biological Station Annual Report is responsive to these FCOs and the USGS obligations via a Memorandum of Understanding (MOU 2017) with the Great Lakes Fishery Commission (GLFC) Council of Lake Committees (CLC) to provide scientific information in support of fishery management. Goals for the USGS Great Lakes Deepwater Fish Assessment and Ecological Studies were to monitor long-term changes in the fish community and track population dynamics of key fishes of interest to management agencies. Specific to Lake Erie, expectations were sustained investigations of native percids, prey fish populations, and Lake Trout. All work was conducted as part of the Deepwater Science Program under the authority of the Great Lakes Fishery Research Authorization Act of 2019 (16 USC §941h). The USGS 2024 Deepwater Science Program fieldwork began in Lake Erie in March and concluded in December, using trawl, gill net, hydroacoustic, lower trophic sampling devices, and telemetry methods. This work resulted in 44 bottom trawls covering 41 ha of lake bottom and catching 48,936 fish totaling 995 kg in the West Basin of Lake Erie, with detailed results described below. Overnight gill net sets (n=25) for coldwater species were performed in the East Basin of Lake Erie. A total of 8 km of gillnet was deployed during these surveys, which caught 106 fish, 92 of which were native coldwater species: Lake Trout, Burbot, and Lake Whitefish. Results from coldwater species assessments will be reported in the Coldwater Task Group report to the GLFC and the CLC (CTG 2025). These reports are used to inform Lake Trout stocking decisions and direct lamprey control measures (16 USC §939a). USGS hydroacoustic sampling included twenty-six 5-km transects (130 km total) in the Central Basin as part of a collaborative lake-wide survey with details and results reported by the Forage Task Group (FTG 2025). Lower trophic sampling provided data from zooplankton samples (n=12) and water quality profiles (n=12) to populate a database maintained by the Michigan Department of Natural Resources (MDNR), Ontario Ministry of Natural Resources (OMNR), Ohio Department of Natural Resources (ODNR), Pennsylvania Fish and Boat Commission (PFBC), and New York State Department of Environmental Conservation (NYSDEC). USGS also assisted CLC member agencies with deployment and maintenance of Great Lakes Acoustic Telemetry Observation System (GLATOS) infrastructure throughout all three Lake Erie basins and tributaries, supporting multiple coordinated telemetry investigations. This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2024 during June and September. The survey design compliments the August ODNR- OMNRF effort by reinforcing stock assessments with more robust data. Analyses herein evaluated trends in total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity, and community structure. Data from this effort are accessible for download (Keretz et al. 2025)

Lake Erie

USGS science for the Nation's changing coasts: Shoreline change research

The demands of increasing human population in the coastal zone create competition with coastal habitat preservation and with recreational and commercial uses of the coast and nearshore waters. As climate changes over the coming century, these problems facing coastal communities will likely worsen. Good management and policy decision-making require baseline information on the rates, trends, and scientific understanding of the processes of coastal change on a regional to national scale. To address this need, the U.S. Geological Survey (USGS) is engaged in a research project of national scope to measure, report, and interpret historical shoreline change along open-ocean coasts of the United States. One of the primary goals of this project is to understand shoreline change hazards using methods that are comparable from one area of the country to another and that will allow for future, repeatable analyses of shoreline movement, coastal erosion, and land loss.

Fact Sheet

Behaviorally-mediated trophic cascade attenuated by prey use of risky places at safe times

The mere threat of predation may incite behavioral changes in prey that lead to community-wide impacts on productivity, biodiversity, and nutrient cycling. The paucity of experimental manipulations, however, has contributed to controversy over the strength of this pathway in wide-ranging vertebrate systems. We investigated whether simulated gray wolf ( Canis lupus ) presence can induce behaviorally-mediated trophic cascades, specifically, whether the ‘fear’ of wolf olfactory cues alone can change deer foraging behavior in ways that affect plants and soils. Wolves were recently removed from the Cedar Creek Ecosystem Science Reserve (Minnesota, USA), such that consumptively mediated predator effects were negligible. At 32 experimental plots, we crossed two nested treatments: wolf urine application and herbivore exclosures. We deployed camera traps to quantify how white-tailed deer ( Odocoileus virginianus ) adjusted their spatiotemporal habitat use, foraging, and vigilance in response to wolf cues and how these behavioral changes affected plant productivity, plant communities, and soil nutrients. Weekly applications of wolf urine significantly altered deer behavior, but deer responses did not cascade to affect plant or soil properties. Deer substantially reduced crepuscular activity at wolf-simulated sites compared to control locations. As wolves in this area predominantly hunted during mornings and evenings, this response potentially allows deer to maximize landscape use by accessing dangerous areas when temporal threat is low. Our experiment suggests that prey may be sensitive to ‘dynamic’ predation risk that is structured across both space and time and, consequentially, prey use of risky areas during safe times may attenuate behaviorally-mediated trophic cascades at the predator–prey interface.

Minnesota

Final Report fr critical thresholds and ecosystem services for coastal ecological and human climate adaptation

Understanding how climate change will impact natural and human communities is a crucial part of decision making and management related to the protection of our coasts. As the effects of climate change on ecological communities grow, the possibility of crossing tipping points or thresholds of viability increases the potential for rapid and possibly irreversible changes in ecosystems. Therefore, understanding thresholds related to climate change is critical for facilitating conservation and management actions, which could help to prevent more costly and possibly catastrophic effects in the future. As part of a broad effort to synthesize and deliver coastal resilience information through the Landscape Conservation Cooperatives (LCCs), Climate Science Centers, states, and other partners along the Atlantic and Gulf Coasts, we synthesized existing quantitative threshold information for 45 priority coastal fish, wildlife, and plant species and habitats in response to sea level rise and storm projections. Additional information was synthesized on climate change adaptation actions that can increase the persistence and resilience of species and their habitats and how these actions relate to human community resilience. In addition to two peer-reviewed manuscripts, results from these synthesis efforts were disseminated online through easily accessible, topic-specific web pages in the Massachusetts Wildlife Climate Action Tool (climateactiontool.org) to make this information more easily accessible to stakeholders across the region. The compilation and dissemination of species and habitat threshold information will help to develop a more comprehensive understanding of how natural systems will respond to climate change and how land and resource management decisions could potentially help these species.

Report

Wastewater-based epidemiology pilot study to examine drug use in the Western United States

The extent of prescription and illicit drug abuse in geographically isolated rural and micropolitan communities in the intermountain western United States (US) has not been well tracked. The goal of this pilot study was to accurately measure drug dose consumption rates (DCR) between two select populations, normalize the data and compare the DCRs to similar communities. To learn about patterns of drug abuse between the two disparate communities, we used the emergent field of wastewater-based epidemiology (WBE). A rapid, quantitative and systematic process for the determination of multiple classes of prescribed and illicit drugs was applied to influent wastewater samples. Influent samples were collected over the course of three months (April to June 2019) at two wastewater treatment plants representing a small urban and a rural community. Collection of sewage influent included 24-h composite samples and the use of polar organic chemical integrative samplers (POCIS), time-weighted samplers. Using the results from the composite sampling data, DCRs per 1000 population could be calculated from the concentration data and the use of excretion correction factors. The following 18 compounds: amphetamine, methamphetamine, MDA, MDMA, morphine, 6-acetylmorphine, methadone, EDDP, codeine, benzoylecgonine, hydrocodone, hydromorphone, oxycodone, noroxycodone, ketamine, fluoxetine, tramadol, and ritalinic acid; represent a subset of the targeted analytes that were consistently measured at detectable concentration levels, and present at both sites. Following normalization of the drug measurements to influent flow rates and per capita, the small urban community demonstrated greater collective excretion rates (CER) than the rural community, with the exceptions of amphetamine and methamphetamine.

Science of the Total Environment

Energy-related wastewater contamination alters microbial communities of sediment, water, and amphibian skin

To inform responsible energy development, it is important to understand the ecological effects of contamination events. Wastewaters, a common byproduct of oil and gas extraction, often contain high concentrations of sodium chloride (NaCl) and heavy metals (e.g., strontium and vanadium). These constituents can negatively affect aquatic organisms, but there is scarce information for how wastewaters influence potentially distinct microbiomes in wetland ecosystems . Additionally, few studies have concomitantly investigated effects of wastewaters on the habitat (water and sediment) and skin microbiomes of amphibians or relationships among these microbial communities. We sampled microbiomes of water, sediment, and skin of four larval amphibian species across a gradient of chloride contamination (0.04–17,500 mg/L Cl) in the Prairie Pothole Region of North America. We detected 3129 genetic phylotypes and 68 % of those phylotypes were shared among the three sample types. The most common shared phylotypes were Proteobacteria, Firmicutes, and Bacteroidetes. Salinity of wastewaters increased dissimilarity within all three microbial communities, but not the diversity or richness of water and skin microbial communities. Strontium was associated with lower diversity and richness of sediment microbial communities, but not those of water or amphibian skin, likely because metal deposition occurs in sediment when wetlands dry. Based on Bray Curtis distance matrices, sediment microbiomes were similar to those of water, but neither had substantial overlap with amphibian microbiomes. Species identity was the strongest predictor of amphibian microbiomes; frog microbiomes were similar but differed from that of the salamander, whose microbiome had the lowest richness and diversity. Understanding how effects of wastewaters on the dissimilarity, richness, and diversity of microbial communities also influence the ecosystem function of communities will be an important next step. However, our study provides novel insight into the characteristics of, and associations among, different wetland microbial communities and effects of wastewaters from energy production.

Montana, North Dakota

Evaluating behavior of oxygen, nitrate, and sulfate during recharge and quantifying reduction rates in a contaminated aquifer

This study evaluates the biogeochemical changes that occur when recharge water comes in contact with a reduced aquifer. It specifically addresses (1) which reactions occur in situ, (2) the order in which these reactions will occur if terminal electron acceptors (TEAs) are introduced simultaneously, (3) the rates of these reactions, and (4) the roles of the aqueous and solid-phase portions of the aquifer. Recharge events of waters containing various combinations of O 2 , NO 3 , and SO 4 were simulated at a shallow sandy aquifer contaminated with waste fuels and chlorinated solvents using modified push−pull tests to quantify rates. In situ rate constants for aerobic respiration (14.4 day - 1 ), denitrification (5.04−7.44 day - 1 ), and sulfate reduction (4.32−6.48 day - 1 ) were estimated. Results show that when introduced together, NO 3 and SO 4 can be consumed simultaneously at similar rates. To distinguish the role of aqueous phase from that of the solid phase of the aquifer, groundwater was extracted, amended with NO 3 and SO 4 , and monitored over time. Results indicate that neither NO 3 nor SO 4 was reduced during the course of the aqueous-phase study, suggesting that NO 3 and SO 4 can behave conservatively in highly reduced water. It is clear that sediments and their associated microbial communities are important in driving redox reactions.

Environmental Science & Technology

Grazing effects on plant community succession of early- and mid-seral seeded grassland compared to shortgrass steppe

Questions: Grazing may speed or slow secondary succession, and the direction may depend on seral stage and relative tolerance of native perennial grasses compared with annual invasive species. How does grazing affect succession where undisturbed communities have a long evolutionary history of grazing by native herbivores and are tolerant to livestock grazing? Location: Shortgrass steppe, North American Great Plains, Colorado (40°49′N, 104°46′W), USA. Methods: Ungrazed and grazed early-seral (4–6 yr) and mid-seral (18–20 yr) seeded fields (Conservation Reserve Program) and traditionally grazed native steppe were compared for effects on plant composition in relation to changes expected from regional succession models. Results: Recovery towards undisturbed native shortgrass steppe for early- and mid-seral communities, respectively, was 19% and 36% for total vegetation cover, 5% and 21% for planted native species, 10% and 88% for non-planted native perennial grasses, only 0.2% and 13% for short grasses, and overall dissimilarity in community species compositions was 97% and 68%. In general, grazing effects were neutral or most often not significant in all years and/or were small in overall community magnitude. The early-seral community displayed more changes indicative of a slowing of succession with grazing (total vegetative and grass basal cover) rather than reducing invasive species (species targeted by timing of grazing), although drought had limited the establishment of grazing-tolerant short grasses. The mid-seral community showed more changes consistent with advancing successional recovery with grazing (overall community dissimilarity, forbs, planted native perennial grasses, tall grasses and target species). However, non-planted native perennial grasses responded negatively to grazing in the mid-seral community and positively in native shortgrass steppe where outside seed would originate. Conclusions: Grazing effects on particular functional groups and species were not the same across seral stages, were mixed in terms of speeding or slowing succession, and were generally not large at the community level. Evolutionary history of grazing may serve as a general guide but decisions on whether to graze successional grasslands may best be made after assessing whether tolerant perennial short grass species are significant components. Monitoring may then be necessary to determine species responses in particular community matrixes and effects on subsequent immigration of non-seeded native perennial species.

Colorado

Stress-gradient hypothesis explains susceptibility to Bromus tectorum invasion and community stability in North America's semi-arid Artemisia tridentata wyomingensis ecosystems

Questions: (1) What combinations of overlapping water and heat stress and herbivory disturbance gradients are associated with shifts in interactions between Artemisia tridentata subsp. wyomingensis (Artemisia) and herbaceous beneficiary species? (2) Do interactions between Artemisia and beneficiaries shift from competition to facilitation with increasing stress-disturbance where facilitation and competition are most frequent and strongest at the highest and lowest levels, respectively? (3) Do such relationships differ for native and non-native beneficiaries? (4) What are the implications of any observed shifts in interactions between community compositional stability in space and susceptibility to invasion? Location: North American Artemisia communities. Methods: We tested the stress-gradient hypothesis (SGH) in an observational study consisting of 75 sites located along overlapping water and heat stress and disturbance gradients. We used spatial patterns of association among Artemisia and six native and two non-native beneficiary species; including the invasive annual grass Bromus tectorum, representing a diverse array of life history strategies, to infer whether the net outcome of interactions was facilitation or competition. We assessed implications for community stability by examining shifts in community composition in space and resistance to invasion. Results/Conclusions: Cattle herbivory, a novel disturbance and selective force, was a significant component of two overlapping stress gradients most strongly associated with observed shifts in interactions. Facilitation and competition were strongest and most frequent at the highest and lowest stress levels along both gradients, respectively. Contrasting ecological optima among native and non-native beneficiaries led to strikingly different patterns of interactions. The four native bunchgrasses with the strongest competitive response abilities exhibited the strongest facilitation at their upper limits of stress tolerance, while the two non-natives exhibited the strongest competition at the highest stress levels, which coincided with their maximum abundance. Artemisia facilitation enhanced stability at intermediate stress levels by providing a refuge for native bunchgrasses, which in turn reduced the magnitude of B. tectorum invasion. However, facilitation was a destabilizing force at the highest stress levels when native bunchgrasses became obligate beneficiaries dependent on facilitation for their persistence. B. tectorum dominated these communities, and the next fire may convert them to annual grasslands.

Oregon

Comparison of preservation and extraction methods on five taxonomically disparate coral microbiomes

All animals are host to a multitude of microorganisms that are essential to the animal’s health. Host-associated microbes have been shown to defend against potential pathogens, provide essential nutrients, interact with the host’s immune system, and even regulate mood. However, it can be difficult to preserve and obtain nucleic acids from some host-associated microbiomes, making studying their microbial communities challenging. Corals are an example of this, in part due to their potentially remote, underwater locations, their thick surface mucopolysaccharide layer, and various inherent molecular inhibitors. This study examined three different preservatives (RNAlater, DNA/RNA Shield, and liquid nitrogen) and two extraction methods (the Qiagen PowerBiofilm kit and the Promega Maxwell RBC kit with modifications) to determine if there was an optimum combination for examining the coral microbiome. These methods were employed across taxonomically diverse coral species, including deep-sea/shallow, stony/soft, and zooxanthellate/azooxanthellate: Lophelia pertusa , Paragorgia johnsoni , Montastraea cavernosa , Porites astreoides , and Stephanocoenia intersepta . Although significant differences were found between preservative types and extraction methods, these differences were subtle, and varied in nature from coral species to coral species. Significant differences between coral species were far more profound than those detected between preservative or extraction method. We suggest that the preservative types presented here and extraction methods using a bead-beating step provide enough consistency to compare coral microbiomes across various studies, as long as subtle differences in microbial communities are attributed to dissimilar methodologies. Additionally, the inclusion of internal controls such as a mock community and extraction blanks can help provide context regarding data quality, improving downstream analyses.

Frontiers in Marine Science

Resilience by Design: Bringing Science to Policy Makers

No one questions that Los Angeles has an earthquake problem. The “Big Bend” of the San Andreas fault in southern California complicates the plate boundary between the North American and Pacific plates, creating a convergent component to the primarily transform boundary. The Southern California Earthquake Center Community Fault Model has over 150 fault segments, each capable of generating a damaging earthquake, in an area with more than 23 million residents (Fig. 1). A Federal Emergency Management Agency (FEMA) analysis of the expected losses from all future earthquakes in the National Seismic Hazard Maps (Petersen et al., 2014) predicts an annual average of more than $3 billion per year in the eight counties of southern California, with half of those losses in Los Angeles County alone (Federal Emergency Management Agency [FEMA], 2008). According to Swiss Re, one of the world’s largest reinsurance companies, Los Angeles faces one of the greatest risks of catastrophic losses from earthquakes of any city in the world, eclipsed only by Tokyo, Jakarta, and Manila (Swiss Re, 2013).

California

Geospatial Information Response Team

Extreme emergency events of national significance that include manmade and natural disasters seem to have become more frequent during the past two decades. The Nation is becoming more resilient to these emergencies through better preparedness, reduced duplication, and establishing better communications so every response and recovery effort saves lives and mitigates the long-term social and economic impacts on the Nation. The National Response Framework (NRF) (http://www.fema.gov/NRF) was developed to provide the guiding principles that enable all response partners to prepare for and provide a unified national response to disasters and emergencies. The NRF provides five key principles for better preparation, coordination, and response: 1) engaged partnerships, 2) a tiered response, 3) scalable, flexible, and adaptable operations, 4) unity of effort, and 5) readiness to act. The NRF also describes how communities, tribes, States, Federal Government, privatesector, and non-governmental partners apply these principles for a coordinated, effective national response. The U.S. Geological Survey (USGS) has adopted the NRF doctrine by establishing several earth-sciences, discipline-level teams to ensure that USGS science, data, and individual expertise are readily available during emergencies. The Geospatial Information Response Team (GIRT) is one of these teams. The USGS established the GIRT to facilitate the effective collection, storage, and dissemination of geospatial data information and products during an emergency. The GIRT ensures that timely geospatial data are available for use by emergency responders, land and resource managers, and for scientific analysis. In an emergency and response capacity, the GIRT is responsible for establishing procedures for geospatial data acquisition, processing, and archiving; discovery, access, and delivery of data; anticipating geospatial needs; and providing coordinated products and services utilizing the USGS' exceptional pool of geospatial experts and equipment.

Fact Sheet

Strategic plan for the Coordinated Intermountain Restoration Project

In 1982, the Bureau of Land Management’s (BLM) Idaho State Office began the Intermountain Greenstripping and Rehabilitation Research Project (IGRRP), or the “Greenstripping Program,” to investigate plant materials and technologies that can reduce wildfire incidence and improve rehabilitation practices. Rehabilitation is normally applied as a reactive process to wildfires, yet land managers in the Great Basin wish to become proactive by replacing fire-prone invasive annual grasses with native plants. The Coordinated Intermountain Restoration Project (CIRP) evolved from the Greenstripping Program to conduct research studies and provide technical assistance on restoration of native ecosystems on rangelands that are infested with invasive annual grasses or other invasive or noxious weeds. To accomplish this objective, the CIRP will promote the understanding of ecosystem disturbance dynamics as well as evaluate plant materials, site preparation techniques, weed control methods, seeding equipment, management methods, and monitoring techniques for restoration projects. The CIRP will not address the restoration of forested or woodland (juniper [Juniperus]) ecosystems. It will include a component on fuel management to reduce the impacts of wildfires on semiarid rangeland ecosystems where exotic annual grasses provide the fuel. The people who will benefit directly from this research include land managers and users of public and private lands in the northern Great Basin, the Columbia Plateau, and the Snake River Plain. The CIRP will provide an integration framework for a multidisciplinary approach to research with numerous opportunities for input and collaboration. The U.S. Geological Survey will initially dedicate approximately \$1 million over 5 years (about \$200,000 per year) to jump-start this effort. U.S. Geological Survey funds will establish a science advisory board to oversee the project. This board will contain members of Federal research and management agencies within the region. U.S. Geological Survey funds will support (1) continued development of VegSpec, a computer program that is a restoration expert system, (2) research to examine changes in ecosystem processes when native plant-dominated communities shift to communities dominated by exotic annual grasses, and (3) research to address mechanisms for establishing native plants in locations dominated by exotic annual grasses. Through these initial funds, USGS hopes to leverage additional research with other agencies (e.g., BLM’s Great Basin Restoration Initiative or the Native Plant Materials Development Project, which is an interagency program to supply and manage native plant materials for restoration and rehabilitation on Federal lands) or funding organizations (e.g., the U.S. Department of Agriculture’s [USDA] National Research Initiative Competitive Grants Program, or the USDA’s and U.S. Department of the Interior’s [USDOI] Joint Fire Science Program), and to obtain additional research partners (e.g., university or Federal scientists) willing to expand this effort to address all aspects of this strategic plan.

Information and Technology Report

Diatoms.org: Supporting taxonomists, connecting communities

Consistent identification of diatoms is a prerequisite for studying their ecology, biogeography, and successful application as environmental indicators. However, taxonomic consistency among observers has been difficult to achieve because taxonomic information is scattered across numerous literature sources, presenting challenges to the diatomist. Firstly, literature is often inaccessible because of cost or its location in journals that are not widely circulated. Secondly, taxonomic revisions of diatoms are taking place faster than floras can be updated. Finally, taxonomic information is often contradictory across literature sources. These issues can be addressed by developing a content creation community dedicated to making taxonomic, ecological, and image-based data freely available for diatom researchers. Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology. The content curation community aggregates existing taxonomic information, creates new content, and provides feedback in the form of corrections and notices of literature with nomenclatural changes. The website not only addresses the needs of experienced diatom scientists for consistent identification but is also designed to meet users at their level of expertise, including engaging the lay public in the importance of diatom science. The website now contains over 1000 species pages contributed by over 100 content contributors, from students to established scientists. The project began with the intent to provide accurate information on diatom identification, ecology, and distribution using an approach that incorporates engaging design, user feedback, and advanced data access technology. In retrospect, the project that began as an ‘extended electronic book’ has emerged not only as a means to support taxonomists, but for practitioners to communicate and collaborate, expanding the size of and benefits to the content curation community. In this paper, we outline the development of diatoms.org , document key elements of the project, examine ongoing challenges and consider the unexpected emergent properties, including the value of diatoms.org as a source of data. Ultimately, if the field of diatom taxonomy, ecology, and biodiversity is to be relevant, a new generation of taxonomists needs to be trained and employed using new tools. We propose that diatoms.org is in a key position to serve as a hub of training and continuity for the study of diatom biodiversity and aquatic conditions.

Diatom Research

Monitoring for the management of disease risk in animal translocation programmes

Monitoring is best viewed as a component of some larger programme focused on science or conservation. The value of monitoring is determined by the extent to which it informs the parent process. Animal translocation programmes are typically designed to augment or establish viable animal populations without changing the local community in any detrimental way. Such programmes seek to minimize disease risk to local wild animals, to translocated animals, and in some cases to humans. Disease monitoring can inform translocation decisions by (1) providing information for state-dependent decisions, (2) assessing progress towards programme objectives, and (3) permitting learning in order to make better decisions in the future. Here we discuss specific decisions that can be informed by both pre-release and post-release disease monitoring programmes. We specify state variables and vital rates needed to inform these decisions. We then discuss monitoring data and analytic methods that can be used to estimate these state variables and vital rates. Our discussion is necessarily general, but hopefully provides a basis for tailoring disease monitoring approaches to specific translocation programmes.

EcoHealth

Ecological contingency in the effects of climatic warming on forest herb communities

Downscaling from the predictions of general climate models is critical to current strategies for mitigating species loss caused by climate change. A key impediment to this downscaling is that we lack a fully developed understanding of how variation in physical, biological, or land-use characteristics mediates the effects of climate change on ecological communities within regions. We analyzed change in understory herb communities over a 60-y period (1949/1951–2007/2009) in a complex montane landscape (the Siskiyou Mountains, Oregon) where mean temperatures have increased 2 °C since 1948, similar to projections for other terrestrial communities. Our 185 sites included primary and secondary-growth lower montane forests (500–1.200 m above sea level) and primary upper montane to subalpine forests (1,500–2,100 m above sea level). In lower montane forests, regardless of land-use history, we found multiple herb-community changes consistent with an effectively drier climate, including lower mean specific leaf area, lower relative cover by species of northern biogeographic affinity, and greater compositional resemblance to communities in southerly topographic positions. At higher elevations we found qualitatively different and more modest changes, including increases in herbs of northern biogeographic affinity and in forest canopy cover. Our results provide community-level validation of predicted nonlinearities in climate change effects.

Oregon