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USGS2016

Estimating abundance: Chapter 27

This chapter provides a non-technical overview of ‘closed population capture–recapture’ models, a class of well-established models that are widely applied in ecology, such as removal sampling, covariate models, and distance sampling. These methods are regularly adopted for studies of reptiles, in order to estimate abundance from counts of marked individuals while accounting for imperfect detection. Thus, the chapter describes some classic closed population models for estimating abundance, with considerations for some recent extensions that provide a spatial context for the estimation of abundance, and therefore density. Finally, the chapter suggests some software for use in data analysis, such as the Windows-based program MARK, and provides an example of estimating abundance and density of reptiles using an artificial cover object survey of Slow Worms ( Anguis fragilis ).

Book chapter↗
USGS2023

Use of multiparameter instruments for routine field measurements

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A6.8, provides guidance and protocols for the use of multiparameter instruments for routine field measurements, which includes storage and maintenance of equipment, calibration, troubleshooting, and procedures for measurement and reporting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.8, version 1.1, by Jacob Gibs, Franceska D. Wilde, and Heather A. Heckathorn. The use of multiparameter instruments for conducting field measurements has become routine. The methods described here are specific to the use of multiparameter instruments. The field methods described in this chapter are applicable to most natural waters. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods↗
USGS2020

Chapter A6.2. Dissolved oxygen

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface water and groundwater resources. This chapter, NFM A6.2, provides guidance and protocols for the measurement of dissolved oxygen, which include the scientific basis of the measurement, selection and maintenance of equipment, calibration, troubleshooting, and procedures for measurement and reporting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.2, version 3.0, by Stewart A, Rounds, Franceska D. Wilde, and George F. Ritz. Dissolved oxygen is routinely measured when water samples are collected, is often continually measured at USGS streamgages, and is a parameter regularly measured during laboratory and field experiments. The field method for measuring dissolved oxygen described in this chapter is applicable to most natural waters. Before 2017, the USGS NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0—U.S. Geological Survey, 2018) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov . Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods↗
USGS2018

Preparations for water sampling

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A1, provides an overview of preparations for water sampling, which includes site reconnaissance, project work plans, quality-assurance plans, basic equipment and supplies needed for fieldwork, safety precautions, and planning for data management. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A1, version 2.0, by F.D. Wilde. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm-owq@usgs.gov .

Techniques and Methods↗
USGS2023

Guidelines for field-measured water-quality properties

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A6.0, provides guidance and protocols for the measurement of field parameters on site, which include the selection of sites and methods for measurement in groundwater and surface water and procedures for measurement and reporting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.0, version 2.0, by Franceska D. Wilde. Field parameters are routinely measured when water samples are collected, are often measured continually at USGS streamgages, and are regularly measured during laboratory and field experiments. The field methods for measuring field parameters described in this chapter are applicable to most natural waters. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods↗
USGS1990

Development of slope valleys in the glacimarine environment of a complex subduction zone, Northern Gulf of Alaska

Morphological, seismic-reflection, and sedimentological evidence indicates that glacial ice tongues cut large sea valleys into the Gulf of Alaska continental shelf during the Pleistocene. During the Holocene, glacially-derived sediments from the Copper River and other meltwater streams have been prograding seaward across the shelf, covering the glacial and glacimarine upper Yakataga diamicts that blanketed the shelf and accumulated on the upper slope seaward of the sea valleys during the Pleistocene. GLORIA imagery near Middleton Island provides a new perspective on the glacimarine depositional environment on the continental slope in a collision zone between the Pacific and North American plates. Southwest of Middleton Island, along the subduction margin, sinuous valleys funnel sediment around shelf-edge-parallel, subduction-created, anticlinal ridges that have deflected and locally trapped glacimarine sediment. The slope south and southeast of Middleton Island where oblique convergence occurs, is incised by dendritic, erosional gulley systems, contains no compressional ridges, and thus, the apparently active sediment pathways to the trench are unrestricted. However, below the sea valley mouths, apparently both glacial and glacimarine sediments blanket the upper slope, covering any dendritic gulley systems that may have formed during or since the Pleistocene low stands of sea level.

Alaska↗
USGS2021

Chapter A6.4. Measurement of pH

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A6.4, provides guidance and protocols for the measurement of pH of a water sample, which include the scientific basis of the measurement, selection and maintenance of equipment, calibration, procedures for measurement and reporting, and troubleshooting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.4, version 2.0, by G.F. Ritz and J.A. Collins. The pH of natural waters is routinely measured when water samples are collected, is often measured continually at USGS streamgages, and is a parameter regularly measured during laboratory and field experiments. The field methods for measuring pH described in this chapter are applicable to most natural waters. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods↗
USGS2019

Chapter A6.3. Specific Conductance

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A6.3, provides guidance and protocols for the measurement of specific conductance of a water sample, which include the scientific basis of the measurement, selection and maintenance of equipment, calibration, troubleshooting, and procedures for measurement and reporting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.3, version 1.2, by D.B. Radtke, J.V. Davis, and F.D. Wilde. Specific conductance is routinely measured when water samples are collected, is often measured continually at USGS streamgages, and is a parameter regularly measured during laboratory and field experiments. The field method for measuring specific conductance described in this chapter is applicable to most natural waters. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov. Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods↗
USGS2024

Temperature

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A6.1, provides guidance and protocols for the measurement of temperature of air, of a surface-water body or in groundwater, which include the scientific basis of the measurement, selection and maintenance of equipment, calibration verification, troubleshooting, and procedures for measurement and reporting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.1, version 2.0, by Franceska D. Wilde. Temperature of air and water is routinely measured when water samples are collected, is often measured continually at USGS streamgages, and is a parameter regularly measured during laboratory and field experiments. The field method for measuring temperature described in this chapter is applicable to air and most natural waters. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods↗
USGS2017

Role of social media and networking in volcanic crises and communication

The growth of social media as a primary and often preferred news source has contributed to the rapid dissemination of information about volcanic eruptions and potential volcanic crises as an eruption begins. Information about volcanic activity comes from a variety of sources: news organisations, emergency management personnel, individuals (both public and official) and volcano monitoring agencies. Once posted, this information is easily shared, increasing the reach to a much broader population than the original audience. The onset and popularity of social media as a vehicle for eruption information dissemination has presented many benefits as well as challenges, and points towards a need for a more unified system for information. This includes volcano observatories using social media as an official channels to distribute activity statements, forecasts and predictions on social media, in addition to the archiving of images and data activity. This chapter looks at two examples of projects that collect / disseminate information regarding volcanic crises and eruptive activity utilizing social media sources. Based on those examples, recommendations are made to volcanic observatories in relation to the use of social media as a two-way communication tool. These recommendations include: using social media as a two-way dialogue to communicate and receive information directly from the public and other sources; stating that the social media account is from an official source; and, posting types of information that the public are seeking such as images, videos and figures.

Book chapter↗
USGS2004

The future of fire in California ecosystems

This chapter reviews the concepts developed in the book and challenges Californians to accept the fact that they live in fire-prone ecosystems. California’s variety of fire regimes are products of its wide diversity of vegetation, climate, topography, and ignitions. The role fire plays in an ecosystem is characterized by the fire regime attributes that describe the pattern of fire occurrence, behavior, and effects. California has a diverse flora comprised of plants that have evolved under a variety of climates and evolutionary pressures. The most universal changes to California’s ecosystems during the historic period have been the alteration of past fire regimes and changes in the pattern of fire on the landscape. Ecosystems change, and it is a mistake to manage any complex, dynamic ecosystem for a single, static state or condition.

California↗
USGS2026

Cumulative effects of multiple stressors on marine mammals: Elephant seals as a model system

Noise exposure is a potential stressor for free-ranging marine mammals and is often studied in the absence of other environmental factors. Here, a multi-investigator, interdisciplinary effort was undertaken to examine the response of elephant seals to multiple stressors. An integrated physiological and ecological approach was taken, including immunology, stress physiology, toxicology, animal behavior, population biology, and life history theory, to examine the cumulative effects of exposure to multiple stressors in elephant seals. While we measured the response of individual animals, a population response can be predicted by incorporating these results into the long-term data on elephant seal demographics.

Book chapter↗
USGS2018

Genetics

In the current context of environmental changes, it is easy to see how extrinsic factors, such as shifts in sea surface temperature, food availability and accumulation of pollutants, can impact the health of marine mammals. However, intrinsic factors, including the genetic constitution of an individual, are also largely responsible for shaping health, particularly in terms of immune system effectiveness. In the previous edition of this book, the chapter on genetics thoroughly addressed the techniques available for identification of species, populations, stocks and individuals, studying social organization, and determining the relationships among individuals in a group. We have written the current chapter with an emphasis on how each individual’s genetic constitution and the prevalence of particular genetic variants is relevant to marine mammal health and disease. The chapter first presents a brief conceptual framework for understanding how genetics shape health and disease. We next outline common genetic techniques and current tools and technologies that are emerging in marine mammal health studies. Finally, the scope, pitfalls and limitations of these tools are discussed.

Book chapter↗
USGS2018

The North American carbon budget: Past, present, and future

This chapter nicely summarizes and synthesizes the latest scientific information on the North American carbon budget by incorporating terrestrial, anthropogenic, aquatic, and coastal margin CO 2 and CH 4 dynamics. Starting with a historical context, the chapter summarizes current understanding of the magnitudes and trends of carbon stocks and fluxes at the continental scale. It also provides a regional context by stratifying the continent to countries and climate assessment regions and discusses the societal drivers, impacts, and carbon management decisions. Knowledge gaps and research needs are also identified. This chapter is well-written and clearly organized, and provides a broad context beyond individual chapters. Some of the main ways the chapter can be improved include the following: some work is needed on the Key Findings (discussed below); the goals and objectives should be explicitly described; critical content areas missing from the chapter are interannual variability of carbon fluxes and impacts of severe and extended droughts; indicators and feedbacks are missing from Section 2.4; consistent use of units is recommended; numbers with 3-4 significant digits over-state the confidence the reader should have, and all numbers should include uncertainties. And one broader concern to note: This chapter follows the global overview in Chapter 1, where “sinks” are sinks in the cycle perturbed by anthropogenic CO 2 and CH 4 , and the assumption is that globally, the net unperturbed background sinks are zero summed across all reservoirs. Yet in this chapter, “sinks” are net fluxes out of the atmosphere, background + perturbation. For the coastal ocean, inland waters, etc.—where lateral transport is significant—these sources and sinks include background/pre-industrial fluxes that are balanced by fluxes elsewhere. These distinctions must be made clear so that the reader is not given an impression of a greater or lesser sink for anthropogenic CO 2 than is there (e.g., P74, lines 4-6).

Book chapter↗
USGS2016

The international scale of the groundwater issue

Throughout history, and throughout the world, groundwater has been a major source of water for sustaining human life. Use of this resource has increased dramatically over the last century. In many areas of the world, the balance between human and ecosystem needs is difficult to maintain. Understanding the international scale of the groundwater issue requires metrics and analysis at a commensurate scale. Advances in remote sensing supplement older traditional direct measurement methods for understanding the magnitude of depletion, and all measurements motivate the need for common data standards to collect and share information. In addition to metrics of groundwater availability, four key international groundwater issues are depletion of water, degradation of water quality, the water-energy nexus, and transboundary water conflicts. This chapter is devoted to introducing these issues, which are also discussed in more detail in later chapters.

Book chapter↗
USGS2010

Water-budget methods

A water budget is an accounting of water movement into and out of, and storage change within, some control volume. Universal and adaptable are adjectives that reflect key features of water-budget methods for estimating recharge. The universal concept of mass conservation of water implies that water-budget methods are applicable over any space and time scales (Healy et al ., 2007). The water budget of a soil column in a laboratory can be studied at scales of millimeters and seconds. A water-budget equation is also an integral component of atmospheric general circulation models used to predict global climates over periods of decades or more. Water-budget equations can be easily customized by adding or removing terms to accurately portray the peculiarities of any hydrologic system. The equations are generally not bound by assumptions on mechanisms by which water moves into, through, and out of the control volume of interest. So water-budget methods can be used to estimate both diffuse and focused recharge, and recharge estimates are unaffected by phenomena such as preferential flow paths within the unsaturated zone. Water-budget methods represent the largest class of techniques for estimating recharge. Most hydrologic models are derived from a water-budget equation and can therefore be classified as water-budget models. It is not feasible to address all water-budget methods in a single chapter. This chapter is limited to discussion of the “residual” water-budget approach, whereby all variables in a water-budget equation, except for recharge, are independently measured or estimated and recharge is set equal to the residual. This chapter is closely linked with Chapter 3, on modeling methods, because the equations presented here form the basis of many models and because models are often used to estimate individual components in water-budget studies. Water budgets for streams and other surface-water bodies are addressed in Chapter 4. The use of soil-water budgets and lysimeters for determining potential recharge and evapotranspiration from changes in water storage is discussed in Chapter 5. Aquifer water-budget methods based on the measurement of groundwater levels are described in Chapter 6.

Book chapter↗
USGS1952

Topographic instructions, Book 3, multiplex procedure; Chapter 3 C7a-e

By direct projection of overlapping photographs, printed on glass plates, the multiplex produces an exact optical model, in miniature, of the terrain to be mapped. To create the model, the multiplex projectors must be properly positioned and oriented so that they duplicate the orientation of the aerial camera at the instant of each exposure. By means of a floating mark, horizontal and vertical measurements can be made in the model, and planimetry and contours can be drawn. The applicability of the multiplex to a given mapping project depends largely on the contour interval and compilation scale required, and also depends, to a lesser extent, on the vegetation and terrain cover as it may affect accuracy requirements. The steps in multiplex procedure are orientation, stereotriangulation, and compilation of detail. In orientation, the projectors are arranged so that the projected images form a stereoscopic model which can be adjusted to fit horizontal and vertical control points. In stereotriangulation, three or more multiplex projectors are oriented so that the consecutive models fit existing control, permitting the establishment of additional or intermediate control. In compilation, the features appearing in the model are delineated on the map manuscript.

Circular↗
USGS1982

Methods for the determination of organic substances in water and fluvial sediments, USGS TWRI, Book 5, Laboratory analysis, Chapter A3

This manual contains analytical methods used by the U.S. Geological Survey for the determination of organic substances in water, water-suspended sediment mixtures, and bottom material. Some of the analytical procedures yield determinations for specific compounds, whereas others provide a measure of the quantity of groups of compounds present in the sample. Examples of the first category are procedures for the organochlorine and organophosphate insecticides, chlorophenoxy acid and triazine herbicides and specific substituted phenols. Examples of the second category are the various organic carbon analyses and the polychlorinated biphenyl methods. Each analytical method is presented in a standardized format which includes conditions for application of the method, a summary of the method, interferences, required apparatus and reagents, analytical procedures, calculations, reporting of results, and estimation of precision.

Open-File Report↗