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USGS1996

Environmental hazards of aluminum to plants, invertebrates, fish, and wildlife

Aluminum (Al) is the third most common mineral and the most common metal in Earth’s crust, accounting for approximately 8.1% of the crust by weight. Thus, it cannot be considered a contaminant in the usual sense of the word. However, despite its near omnipresence throughout the world, Al has been of major concern as a primary limiting factor to cultivated plants for several decades. In much of the world, Al severely restricts the growth and presence of plant species. Since the late 1970s, concern about Al toxicity has spread to natural habitats, most notably forests and aquatic communities. The primary impetus for this concern has been the increased awareness of the effects of anthropogenic acidification through mine drainage, acid deposition, and other sources. The toxicity of Al is intimately associated with pH in that the metal is soluble and biologically available in acidic (pH <5.5) soils and waters but relatively innocuous in circumneutral (pH 5.5-7.5) conditions. Forest die-offs and reduced survivorship or impaired reproduction of aquatic invertebrates, fish, and amphibians have been directly connected to Al toxicity. Indirect effects on birds and mammals also have been identified. The purpose of this review is to summarize the toxic effects of Al to populations and to evaluate the potential hazards to the communities in which these populations are found.

Book chapter↗

USGS2022

California Deepwater Investigations and Groundtruthing (Cal DIG) I, volume 3 — Benthic habitat characterization offshore Morro Bay, California

Coastal and Marine Ecological Classification Standard (CMECS) geoform, substrate, and biotic component geographic information system (GIS) products were developed for the U.S. Exclusive Economic Zone (U.S. EEZ) of south-central California in the region of Santa Lucia Bank motivated by interest in development of offshore wind-energy capacity and infrastructure. The Bureau of Ocean Energy Management (BOEM), in coordination with the State of California and many other members of the California Task Force, issued calls for information in 2018 for the study area offshore of Morro Bay, California. The study area is in depths of 500 to 1,200 meters (m) and adjacent to a decommissioned nuclear power plant with a developed electric grid connection, and in an area of high wind resource. BOEM is the lead agency responsible for planning and leasing in the U.S. EEZ and funded this project to assess baseline conditions of, and the potential effects on, the seafloor environment. This project, carried out by the U.S. Geological Survey (USGS), resulted in three reports: one on biological analysis of seafloor video data, one on analysis of the geologic framework and hazards, and this report on seafloor habitat. The study area consists of 8,424 square kilometers (km 2 ) of multibeam echo sounder (MBES) data acquired during five surveys from 2016 to 2019. Remotely operated vehicle (ROV) video was acquired in 2019 to supervise the classification of the MBES data into habitats. Derivatives of the MBES data were classified into 16 unique biotopes, 6 substrate types, 28 modifier groups, and 22 geoforms. The study area substrate is predominantly soft sediment (mud and fine sand) covering 7,804 km 2 (92.7 percent) of the area. Mixed substrate areas on rocky banks, channel scarps, and the shelf break comprise 404 km 2 (4.8 percent) of the study area. Hard substrate areas are found predominantly on the tops and flanks of banks and on bank ridges that separate canyons incising the banks. Hard substrates comprise 211 km 2 of the study area (2.5 percent). After the bathymetry and backscatter raster images (rasters) were classified, manual editing was also done to remove noise artifacts. This effort was not completely successful and there are numerous erroneous small areas in the rasters that have been passed on to the CMECS polygon product. Nearly 120,000 annotations of organisms and their habitat were made from 25 video transects selected from 185 hours of ROV video. In total, 2,714 km 2 of seafloor were successfully assigned to biotopes. Some biotopes were assigned to separate areas spatially distant from the transects that define the biotope. Expected relations between physical habitat and biota such as the number of species and the substrate induration and rugosity were verified. Slope is typically a predictive variable and was used in the classification of habitat, but the ground truth used for biotic component analysis included very little steeply sloping area. Ground-truth ROV operations were reduced by the sea state; additional ground truth could improve the biotic results and increase confidence in the spatial distribution of classifications reported here.

California↗

USGS2004

Sagebrush ecosystems: current status and trends.

The sagebrush ( Artemisia spp .) biome has changed since settlement by Europeans. The current distribution, composition and dynamics, and disturbance regimes of sagebrush ecosystems have been altered by interactions among disturbance, land use, and invasion of exotic plants. In this chapter, we present the dominant factors that have influenced habitats across the sagebrush biome. Using a large-scale analysis, we identified regional changes and patterns in “natural disturbance”, invasive exotic species, and influences of land use in sagebrush systems. Number of fires and total area burned has increased since 1980 across much of the sagebrush biome. Juniper ( Juniperus spp. ) and pinyon (Pinus spp.) woodlands have expanded into sagebrush habitats at higher elevations. Cheatgrass ( Bromus tectorum ), an exotic annual grass, has invaded much of lower elevation, more xeric sagebrush landscapes across the western portion of the biome. Consequently, synergistic feedbacks between habitats and disturbance (natural and human-caused) have altered disturbance regimes, plant community dynamics and contributed to loss of sagebrush habitats and change in plant communities. Habitat conversion to agriculture has occurred in the highly productive regions of the sagebrush biome and influenced up to 56% of the Conservation Assessment area. Similarly, urban areas, and road, railroad, and powerline networks fragment habitats, facilitate predator movements, and provide corridors for spread of exotic species across the entire sagebrush biome. Livestock grazing has altered sagebrush habitats; the effects of overgrazing combined with drought on plant communities in the late 1880s and early 1900s still influences current habitats. Management of livestock grazing has influenced sagebrush ecosystems by habitat treatments to increase forage and reduce sagebrush and other plant species unpalatable to livestock. Fences, roads, and water developments to manage livestock movements have further influenced the landscape and increased access into sagebrush habitats. Energy development also influenced sagebrush landscapes by construction of wells, access roads, and pipelines. Treatments to restore sagebrush are becoming a major emphasis of land management agencies. However, revegetation and rehabilitation treatments are limited by the financial, biological, and technological resources needed to restore sagebrush landscapes that function at the spatial and temporal scales used by sage-grouse ( Centrocercus urophasianus )

Book chapter↗

USGS2026

Beyond barriers: Fish assemblage recovery following dam removal on the Cuyahoga River, a Lake Erie tributary

Dam removals are increasing globally, yet ecological outcomes vary widely because biological recovery depends on post-removal connectivity and access to source populations. We evaluated how multiple dam removals and remaining fragmentation influenced fish assemblage recovery in the Cuyahoga River (OH, United States), a historically polluted Great Lakes tributary now undergoing extensive remediation and restoration. Using fish assemblage data collected from 1984 to 2024 across reaches downstream, within, and upstream of the Gorge Plant Dam (GPD), an 18-m barrier slated for removal, we quantified spatial and temporal change with ordination, trajectory, and distance-based redundancy analyses. Downstream assemblages showed a clear shift through time and gained 15 newly detected taxa after the 2020 Brecksville Dam removal increased longitudinal connectivity to Lake Erie by 39 river kilometers, more than doubling free-flowing habitat below GPD. In contrast, assemblages upstream of GPD exhibited limited change and patterns consistent with redistribution of resident species rather than colonization-driven turnover. Across the full time series, site position relative to GPD and the rate of dam removal were the strongest predictors of assemblage variation, with habitat gradients (e.g. depth, velocity, turbidity, and canopy cover) further differentiating reaches. Together, these results show that connectivity and barrier position shape assemblage recovery following dam removal. Most newly detected taxa downstream were native, though three were nonnative, indicating trade-offs between recolonization and nonnative spread.

Ohio↗

USGS1999

Evaluation of waterfowl conservation under the North American Waterfowl Management Plan

In 1986, the North American Waterfowl Management Plan (Plan) was signed by the U.S. Secretary of the Interior and the Canadian Minister of the Environment, with a goal of restoring waterfowl populations to levels of the 1970s via habitat conservation. Central to the Plan is a set of ambitious continental population goals and habitat objectives to be met through broad-based public-private partnerships. Inadequate attention has been paid to evaluation of the Plan, despite the fact that Plan delivery can be enhanced via improved understanding of the effects of habitat conservation on waterfowl population dynamics. Several factors confound the effort to evaluate the Plan at regional and continental levels, including difficulties in accounting for national land-use policies. To date, evaluation has proceeded along 2 avenues of investigation: (1) the study of conservation actions at local-regional levels, and (2) statistical assessment of Plan assumptions. Among other things, results thus far indicate duck production from the U.S. Northern Great Plains has increased in recent years, and intensive treatments such as planted cover have had positive effects on local reproductive success. Many duck species currently exceed Plan population goals; however, population levels of some species, most notably northern pintail (Anas acuta), remain below expectations based on historic relationships with precipitation. Management implications include the need for ongoing and more carefully prioritized conservation efforts, broader partnerships, and improved understanding of the linkages between habitats and biological processes. Delivery of the Plan must involve collaboration among the Continental Evaluation Team, joint Venture partners, the Adaptive Management and Assessment Team of the U.S. Fish and Wildlife Service, and other conservation groups. Although the challenges and projected costs of Plan conservation efforts are considerable, the long-term potential benefits to waterfowl conservation are great.

Journal of Wildlife Management↗

USGS2022

Sources and characteristics of dissolved organic carbon in the McKenzie River, Oregon, related to the formation of disinfection by-products in treated drinking water

Executive Summary This study characterized the concentration and quality of dissolved organic carbon (DOC) in the McKenzie River, a relatively undeveloped watershed in western Oregon, and its link to forming disinfection by-products (DBPs) in treated drinking water. The study aimed to identify the primary source(s) of DOC in source water for the Eugene Water & Electric Board’s (EWEB) conventional treatment plant on the McKenzie River near river mile 11, upstream of Hayden Bridge. The two classes of regulated compounds examined—trihalomethanes (THMs) and haloacetic acids (HAAs)—form when organic carbon in raw source water reacts with chlorine and (or) bromine during water treatment. The objectives of the study were to: characterize the amount and quality of DOC in the McKenzie River and select tributaries during storms; identify the most common types of carbon using UV-vis spectroscopy and other methods; evaluate optical properties for predicting DBP precursors in surface water; and identify land cover classes or vegetation types that may be important sources of organic carbon and DBP precursors in EWEB’s source water. Eleven storms were sampled synoptically in upstream-to-downstream fashion to provide a “snapshot” of water quality conditions at four sites on the McKenzie River from Frissell Bridge (6 miles downstream from Trail Bridge Reservoir) to the EWEB water treatment plant at Hayden Bridge and nine contributing tributaries. Storms included late summer and early autumn “first flush” events and late autumn, winter, and spring storms spanning a range in streamflows from 3,000 to 26,000 cubic feet per second as measured in the main stem McKenzie River at the EWEB water intake. Water samples were analyzed for DOC concentrations and optical properties (fluorescence and ultraviolet absorbance [UVA]) across a range of wavelengths to characterize the quantity and quality of dissolved organic matter (DOM) in the McKenzie River at the drinking water intake and upstream locations. Paired sets of source and finished water samples were collected at the EWEB treatment plant to identify DOC quality parameters in raw source water that might predict DBP concentrations in finished drinking water. DOC concentrations were relatively low in the McKenzie River (0.4–3 milligrams per liter [mg/L]; average 1.5 mg/L) but much higher in the tributaries. The highest DOC concentrations occurred during “first flush” storms in October 2012 and September 2013; the highest value (16 mg/L) was measured at the 52nd Street stormwater outfall. The average DOC concentration in the lower basin-tributaries was 3.8 mg/L; three middle basin tributaries—Quartz, Gate, and Haagen Creeks, which drain private forestland with less coniferous forest compared with other higher elevation tributaries— had slightly lower average DOC concentrations (2.8 mg/L). These middle-basin watersheds may be important sources of DOC and DBP precursors to the McKenzie River, even more so than the lower basin tributaries, depending on their flows (and loads). This is particularly true after the September 2020 Holiday Farm fire, which burned much of this area. DOC concentrations increased 68 percent in the McKenzie River between the uppermost reference site at Frissell Bridge and Vida; this includes drainage from Quartz Creek, Blue River Lake and Cougar Reservoir, which all contributed DOC to the main stem. In contrast, the lowermost tributaries draining most of the agricultural and urban land did not have a large effect on DOC in the McKenzie River despite their higher DOC concentrations because of their presumed relatively low streamflows and, consequently, DOC loads. Apart from the continuous flow monitors in the McKenzie River and some tributaries (Blue River and South Fork McKenzie River, and streamflow at Hayden Bridge and Vida, Camp Creek and some other locations), streamflow was not assessed during sample collection for this study. This lack of streamflow data precludes a detailed analysis of loads, which is discussed in the future studies section. All DBP concentrations in finished drinking water were less than EPA maximum contaminant levels (MCLs) of 0.080 mg/L for the four trihalomethanes (THM4) and 0.060 mg/L for five haloacetic acids (HAA5). During the 11 storm sampling events the maximum summed concentrations were about 0.040 mg/L for both THM4 and HAA5. Compliance monitoring samples, collected separately by EWEB, yielded some higher concentrations—0.046 mg/L THM4 and 0.047 HAA5—during the December 2012 storm. The corresponding benchmark quotient (BQ) values, which indicate how close a measured DBP concentration is to the MCL, were 0.58 and 0.78, respectively, for THM4 and HAA5. Compared with a similar 2007–08 McKenzie River study that did not target storm events, concentrations of THM4 and HAA5 in finished water were 68 percent and 33 percent higher, respectively, during the current study. Due to the high dilution rates in the McKenzie River main stem, many of the individual fluorescence excitation-emission measurements were low (<0.1 Raman units) and approached analytical detection limits. Parallel factor analysis (PARAFAC) resulted in a five-component model (C1–C5) that represents five unique organic fluorophores. Components C1, C2, and C3 represent DOM associated with soil-derived, humic-like, more degraded organic matter. In contrast, components C4 and C5 represent “fresher” DOM, derived from terrestrial and aquatic plants, including algae and cyanobacteria that are common in the McKenzie River and its tributaries and reservoirs. The fluorescence data and PARAFAC modeling suggest that most of the DOC in the McKenzie River originated from terrestrial sources (primarily components C1 and C2). The largest increases in DOC in the main stem occurred in the reach upstream of Vida, from inflows by Quartz Creek, Blue River, South Fork McKenzie River, and other tributaries. Concentrations of DBPs in EWEB’s finished drinking water were positively correlated with DOC concentrations in raw source water (THM4, p <0.05; HAA5, p <0.01) for paired samples collected 12−24 hours apart. DOC concentrations were significantly positively correlated ( p <0.001) with laboratory-based fluorescent dissolved organic matter (fDOM) measurements, suggesting fDOM as a useful parameter for monitoring and predicting DOC concentration in surface water and DBP concentrations in finished water. Of all the PARAFAC components in surface water, C5 had the highest correlations with DBPs in finished water (rho = 0.77–0.84, p <0.01), followed by components C1 and C2 (rho = 0.75 and 0.71, respectively, p <0.01). This C5 carbon is associated with recently produced DOM, possibly from decomposed terrestrial and aquatic vegetation. Model loadings of these three components were considerably higher in the sampled tributaries relative to the main stem McKenzie River, with most of the observed increases in the main stem apparent at Vida. This points to Quartz Creek or other tributaries in the reach between Frissell Bridge and the sampling site near Vida (South Fork McKenzie and Blue Rivers) as potentially key contributors of DOM source material that leads to the production of DBPs in treated drinking water. A limited load analysis showed that the reservoirs contributed 8–37 percent of the instantaneous DOC loads observed at Vida at the time of sampling, which suggests other sources such as Quartz Creek and other streams in the reach between Frissell Bridge and Vida are more important. Random forest analyses identified PARAFAC components C1 and C5 and fluorescence peaks A, C, M, T and N as the best predictors for HAA5 concentrations in finished drinking water, explaining 62.5 percent of the variation. The best predictors for THM4 were C1, C4 + C5, and peaks T, A, and N, which explained 33 percent of the variation. Several land cover and vegetation classes were correlated with DOC concentration and other optical measurements. The percentage of evergreen forest in each of the subwatersheds sampled was negatively correlated ( p <0.001) with DOC concentration and many optical indicators of DOM quantity: UVA 254 , fDOM, and all of the fluorescence peaks. In contrast, mixed (deciduous) forest was positively correlated ( p <0.001) with DOC, fDOM, UVA 254 , and several fluorescence peaks, demonstrating the importance of deciduous leaf fall in generating DOC and DBP precursors. The high level of human activities in the middle and lower portion of the basin—including timber harvesting and road construction on private forestland, agricultural, rural, industrial, and urban development—have resulted in the greatest loss in native coniferous and mixed deciduous forests in the basin. DOC loading from these tributaries and reservoir releases, which contain DOC from terrestrial and aquatic productivity, both enrich the McKenzie River. Concentrations of DOC increased an average of 71 percent (range 30–120 percent) in the McKenzie River between Frissell Bridge, the upstream reference site, and Vida. PARAFAC components C1, C2, and C5—which were correlated with DBPs in finished water—increased, on average, 109–136 percent (range 20–250 percent) in this same Frissell-to-Vida reach. These increases occur from input of tributaries in the middle basin such as Quartz Creek and others, as noted above. Future monitoring, field, and lab studies can improve our understanding of seasonal and spatial sources of organic carbon contributing DBP precursors to the McKenzie River and allow detection of long-term trends resulting from the recent Holiday Farm Fire, which burned 173,393 acres of forestland, including riparian areas along the main stem, and numerous structures, homes, and outbuildings in September 2020. Future studies could examine DOC fluxes and flushing of carbon from the watershed, investigate the role of precipitation amount and intensity in mobilizing carbon and sediment, and evaluate impacts to aquatic communities and human health as part of a post-fire assessment. Other areas ripe for study include evaluating the impacts of potential temperature increases on carbon sequestration and decomposition in the burned and unburned forests and identifying practices that foster sequestration of carbon in forest soils. The use of fluorescence sensors such as fDOM to monitor the concentration and composition of raw water supplies may be improved for detection of specific DBP precursors, to provide continuous and real-time information to treatment plant operators. Future studies that monitor DOM amount and quality, and DBP Formation Potential (FP), particularly during storm events, paired with streamflow measurements, as suggested above, could help identify areas that contribute high DOC loads and thus help managers identify the key areas to focus restoration activities. Other studies could examine treatment options for currently regulated DBPs and potentially unregulated compounds, including advanced biological treatments for their removal. This study was a collaboration between the U.S. Geological Survey (USGS) and EWEB in Eugene, Oregon, with additional funding provided from USGS Cooperative Matching Funds Program.

Oregon↗

USGS1975

Chemical and biological quality of water in part of the Everglades, southeastern Florida

A comprehensive monitoring network was established in a part of the Everglades to evaluate the quality of water being delivered to Everglades National Park. Physical, chemical, and biological parameters were determined in surface water, bottom sediment, and bulk precipitation (rainfall and dry fallout). The geology of the area, bottom sediment, bulk precipitation, natural, urban, and agricultural runoff, and the characteristics of the hydrologic system in the Everglades influence the type and concentration of each chemical constituent and how it affects the water quality. The quality of surface water in the agricultural area between Lake Okeechobee and the water conservation areas is markedly different from that of other surface water in southeastern Florida. In general, the water in this area is higher in concentrations of most chemical constituents. Man has engaged in cultural activities, both agricultural and urban, which have affected the water quality in the northern and eastern segments of the area of investigation. The quality of the water improves, however, as it flows to the south and east because there is minimal input from man's activities and many of the constituents are assimilated by plants, sorbed on organic material and clay in the bottom sediments, and entrapped within the sediments. Dilution by rainfall and concentration by evapotranspiration are also important factors that influence the quality of surface water in the area of investigation. The area of investigation in the Everglades is a sink for macronutrients, trace metals, and chlorinated-hydrocarbon insecticides. These constituents do not move through the system freely. They become tied up in various complexes and for that reason, the water being delivered to Everglades National Park is of better quality than the water entering the northern edge of the water conservation areas. The various physical and biological processes and chemical reactions combine to improve the water quality as the water flows southward. The data presented in this report may be used as a baseline for determination of future changes in water quality at the several places in the Everglades where recurrent sampling of rainfall, surface water, and bottom sediments was undertaken during the course of the investigation.

Florida↗

USGS2012

Increased temperature and altered summer precipitation have differential effects on biological soil crusts in a dryland ecosystem

Biological soil crusts (biocrusts) are common and ecologically important members of dryland ecosystems worldwide, where they stabilize soil surfaces and contribute newly fixed C and N to soils. To test the impacts of predicted climate change scenarios on biocrusts in a dryland ecosystem, the effects of a 2–3 °C increase in soil temperature and an increased frequency of smaller summer precipitation events were examined in a large, replicated field study conducted in the cold desert of the Colorado Plateau, USA. Surface soil biomass (DNA concentration), photosynthetically active cyanobacterial biomass (chlorophyll a concentration), cyanobacterial abundance (quantitative PCR assay), and bacterial community composition (16S rRNA gene sequencing) were monitored seasonally over 2 years. Soil microbial biomass and bacterial community composition were highly stratified between the 0–2 cm depth biocrusts and 5–10 cm depth soil beneath the biocrusts. The increase in temperature did not have a detectable effect on any of the measured parameters over 2 years. However, after the second summer of altered summer precipitation pattern, significant declines occurred in the surface soil biomass (avg. DNA concentration declined 38%), photosynthetic cyanobacterial biomass (avg. chlorophyll a concentration declined 78%), cyanobacterial abundance (avg. gene copies g −1 soil declined 95%), and proportion of Cyanobacteria in the biocrust bacterial community (avg. representation in sequence libraries declined 85%). Biocrusts are important contributors to soil stability, soil C and N stores, and plant performance, and the loss or reduction of biocrusts under an altered precipitation pattern associated with climate change could contribute significantly to lower soil fertility and increased erosion and dust production in dryland ecosystems at a regional scale.

Global Change Biology↗

USGS2026

Recent scientific contributions by the U.S. Geological Survey in the San Francisco Bay and Sacramento–San Joaquin Delta Estuary

Introduction The San Francisco Bay and Sacramento–San Joaquin Delta Estuary (hereafter, Bay-Delta) is the largest estuary on the West Coast of the United States. The Bay-Delta covers more than 1,600 square miles and drains a watershed of more than 75,000 square miles, which is greater than 40 percent of California. The region surrounding the Bay-Delta is home to about 10 million people, and its habitats (fig. 1) support more than 800 plant and animal species. The waterways of the Bay-Delta are the central hub of California’s extensive freshwater delivery system, supplying water to more than 27 million Californians and 4 million acres of farmland in the Central Valley. The U.S. Geological Survey (USGS) is the primary science agency of the U.S. Department of the Interior, providing a broad range of Earth, water, biological, and mapping data and expertise to inform natural resource management across the country. This fact sheet focuses on research conducted by the USGS in the Bay-Delta region, mostly within the past 5 years. The fact sheet is organized across five major themes: water flow and water quality, fish and wildlife, wetland restoration, invasive species, and hazards. In each of these areas, the USGS works closely with Federal, State, and local agencies; academia; and non-governmental organizations to provide objective, evidence-based science. The data and knowledge gained from USGS research and monitoring are publicly available and are routinely used by agencies, including the U.S. Bureau of Reclamation, U.S. Army Corps of Engineers, U.S. Fish and Wildlife Service, California Department of Water Resources, California Department of Fish and Wildlife, California State Water Resources Control Board, Delta Stewardship Council, and many additional organizations and stakeholders to inform management of the Bay-Delta region and its resources.

California↗

USGS2018

Natural resource condition assessment: Olympic National Park

The Natural Resource Assessment Program aims to document condition and trends of selected park resources while identifying emerging issues and information needs. This information is intended to serve as a platform for natural resource managers to use in developing future resource stewardship priorities and planning. Olympic National Park (OLYM) on Washington’s Olympic Peninsula protects remarkable examples of several Pacific Northwestern ecosystems, including the glacier-capped Olympic Mountains, oldgrowth temperate rainforests, pristine river systems, and wild Pacific coastline and islands. The park provides habitat for numerous plants and animals, including at least 16 animal and eight plant taxa endemic to the Olympic Peninsula. The park’s lakes and rivers support over 70 stocks of Pacific salmonids and 29 native freshwater fish species. The rocky intertidal community is one of the most complex and diverse shorelines in the United States. Although we conducted in-depth assessments on a limited number of resources, the general condition of several other physical and biological components of OLYM ecosystems is described in Chapter 2, along with an overview of park history and ecology. In Chapter 3, we describe how we chose our focal resources and measures, as well as our protocol for conducting the assessment. In Chapter 4, we provide a detailed assessment of each resource, with a summary of condition and trends. In Chapter 5, we further interpret and discuss the implications of each focal resource status, highlighting future areas for monitoring and research. We summarize the general findings from our assessments below.

Washington↗

USGS2002

Hydrologic variability and the application of Index of Biotic Integrity metrics to wetlands: a Great Lakes evaluation

Interest by land-management and regulatory agencies in using biological indicators to detect wetland degradation, coupled with ongoing use of this approach to assess water quality in streams, led to the desire to develop and evaluate an Index of Biotic Integrity (IBI) for wetlands that could be used to categorize the level of degradation. We undertook this challenge with data from coastal wetlands of the Great Lakes, which have been degraded by a variety of human disturbances. We studied six barrier beach wetlands in western Lake Superior, six drowned-river-mouth wetlands along the eastern shore of Lake Michigan, and six open shoreline wetlands in Saginaw Bay of Lake Huron. Plant, fish, and invertebrate communities were sampled in each wetland. The resulting data were assessed in various forms against gradients of human disturbance to identify potential metrics that could be used in IBI development. Our results suggested that the metrics proposed as potential components of an IBI for barrier beach wetlands of Lake Superior held promise. The metrics for Lake Michigan drowned-river-mouth wetlands were inconsistent in identifying gradients of disturbance; those for Lake Huron open embayment wetlands were yet more inconsistent. Despite the potential displayed by the Lake Superior results within the year sampled, we concluded that an IBI for use in Great Lakes wetlands would not be valid unless separate scoring ranges were derived for each of several sequences of water-level histories. Variability in lake levels from year to year can produce variability in data and affect the reproducibility of data collected, primarily due to extreme changes in plant communities and the faunal habitat they provide. Substantially different results could be obtained in the same wetland in different years as a result of the response to lake-level change, with no change in the level of human disturbance. Additional problems included limited numbers of comparable sites, potential lack of undisturbed reference sites, and variable effects of different disturbance types. We also evaluated our conclusions with respect to hydrologic variability and other major natural disturbances affecting wetlands in other regions. We concluded that after segregation of wetland types by geographic, geomorphic, and hydrologic features, a functional IBI may be possible for wetlands with relatively stable hydrology. However, an IBI for wetlands with unpredictable yet recurring influences of climate-induced, long-term high water periods, droughts, or drought-related fires or weather-related catastrophic floods or high winds (hurricanes) would also require differing scales of measurement for years that differ in the length of time since the last major natural disturbance. A site-specific, detailed ecological analysis of biological indicators may indeed be of value in determining the quality or status of wetlands, but we recommend that IBI scores not be used unless the scoring ranges are calibrated for the specific hydrologic history pre-dating any sampling year.

Wetlands↗

USGS2004

Density and success of bird nests relative to grazing on western Montana grasslands

Grassland birds are declining at a faster rate than any other group of North American bird species. Livestock grazing is the primary economic use of grasslands in the western United States, but the effects of this use on distribution and productivity of grassland birds are unclear. We examined nest density and success of ground-nesting birds on grazed and ungrazed grasslands in western Montana. In comparison to grazed plots, ungrazed plots had reduced forb cover, increased litter cover, increased litter depth, and increased visual obstruction readings (VOR) of vegetation. Nest density among 10 of 11 common bird species was most strongly correlated with VOR of plots, and greatest nest density for each species occurred where mean VOR of the plot was similar to mean VOR at nests. Additionally, all bird species were relatively consistent in their choice of VOR at nests despite substantial differences in VOR among plots. We suggest that birds selected plots based in part on availability of suitable nest sites and that variation in nest density relative to grazing reflected the effect of grazing on availability of nest sites. Nest success was similar between grazed plots and ungrazed plots for two species but was lower for nests on grazed plots than on ungrazed plots for two other species because of increased rates of predation, trampling, or parasitism by brown-headed cowbirds ( Molothrus ater ). Other species nested almost exclusively on ungrazed plots (six species) or grazed plots (one species), precluding evaluation of the effects of grazing on nest success. We demonstrate that each species in a diverse suite of ground-nesting birds preferentially used certain habitats for nesting and that grazing altered availability of preferred nesting habitats through changes in vegetation structure and plant species composition. We also show that grazing directly or indirectly predisposed some bird species to increased nesting mortality. Management alternatives that avoid intensive grazing during the breeding season would be expected to benefit many grassland bird species.

Montana↗

USGS2008

Algal and water-quality data for Rapid Creek and Canyon Lake near Rapid City, South Dakota, 2007

This report summarizes the results of algae and water-quality sampling on Rapid Creek and Canyon Lake during May and September 2007. The overall purpose of the study was to determine the algal community composition of Rapid Creek and Canyon Lake in relation to organisms that are known producers of unwanted tastes and odors in drinking-water supplies. Algal assemblage structure (phytoplankton and periphyton) was examined at 16 sites on Rapid Creek and Canyon Lake during May and September 2007, and actinomycetes bacteria were sampled at the Rapid City water treatment plant intake in May 2007, to determine if taste-and-odor producing organisms were present. During the May 2007 sampling, 3 Rapid Creek sites and 4 Canyon Lake sites were quantitatively sampled for phytoplankton in the water column, 7 Rapid Creek sites were quantitatively sampled for attached periphyton, and 4 lake and retention pond sites were qualitatively sampled for periphyton. Five Rapid Creek sites were sampled for geosmin and 2-methylisoborneol, two common taste-and-odor causing compounds known to affect water supplies. During the September 2007 sampling, 4 Rapid Creek sites were quantitatively sampled for attached periphyton, and 3 Canyon Lake sites were qualitatively sampled for periphyton. Water temperature, dissolved oxygen, pH, and specific conductance were measured during each sampling event. Methods of collection and sample analysis are presented for the various types of biological and chemical constituent samples. Diatoms comprised 91-100 percent of the total algal biovolume in periphyton samples collected during May and September. Cyanobacteria (also called blue-green algae) were detected in 7 of the 11 quantitative periphyton samples and ranged from 0.01 to 2.0 percent of the total biovolume. Cyanobacteria were present in 3 of the 7 phytoplankton samples collected in May, but the relative biovolumes were small (0.01-0.2 percent). Six of seven qualitative samples collected from Canyon Lake and retention ponds during May and September also contained cyanobacteria. Geosmin and 2-methylisoborneol concentrations were less than detection limits (0.005 ug/L) in all five of the Rapid Creek samples collected in May. Actinomycetes bacteria were present at the water treatment plant intake in May 2007, at a concentration of 6 colonies per milliliter. During this study, no taste-and-odor problems with the drinking water within the study area were reported. However, the presence of cyanobacterial taxa known to contain taste-and-odor producing strains (such as Leptolyngbya, Phormidium, and Anabaena) indicates the potential for taste-and-odor problems under certain physical and chemical conditions.

South Dakota↗

USGS2011

Toward a community coastal sediment transport modeling system: the second workshop

Models for transport and the long-term fate of particles in coastal waters are essential for a variety of applications related to commerce, defense, public health, and the quality of the marine environment. Examples include: analysis of waste disposal and transport and the fate of contaminated materials; evaluation of burial rates for naval mines or archaeological artifacts; prediction of water-column optical properties; analysis of transport and the fate of biological particles; prediction of coastal flooding and coastal erosion; evaluation of impacts of sea-level or wave-climate changes and coastal development; planning for construction and maintenance of navigable waterways; evaluation of habitat for commercial fisheries; evaluation of impacts of natural or anthropogenic changes in coastal conditions on recreational activities; and design of intakes and outfalls for sewage treatment, cooling systems, and desalination plants.

Eos, Transactions, American Geophysical Union↗

USGS2009

A burning story: The role of fire in the history of life

Ecologists, biogeographers, and paleobotanists have long thought that climate and soils controlled the distribution of ecosystems, with the role of fire getting only limited appreciation. Here we review evidence from different disciplines demonstrating that wildfire appeared concomitant with the origin of terrestrial plants and played an important role throughout the history of life. The importance of fire has waxed and waned in association with changes in climate and paleoatmospheric conditions. Well before the emergence of humans on Earth, fire played a key role in the origins of plant adaptations as well as in the distribution of ecosystems. Humans initiated a new stage in ecosystem fire, using it to make the Earth more suited to their lifestyle. However, as human populations have expanded their use of fire, their actions have come to dominate some ecosystems and change natural processes in ways that threaten the sustainability of some landscapes. ?? 2009 by American Institute of Biological Sciences.

BioScience↗

USGS2023

Association of excessive precipitation and agricultural land use with honey bee colony performance

Context: From landscape variables to weather, multiple environmental factors affect honey bees and other pollinators. Detailed honey bee colony assessments in a variety of landscape and weather conditions offer the opportunity to develop a mechanistic understanding of how landscape composition, configuration, and weather are associated with colony nutrition, demography, and productivity. Objectives: Our objective was to test if weather and landscape characteristics (e.g., agricultural versus forested land use) are associated with different honey bee colony outcomes (foraged nectar mass, foraged pollen mass, pupal population size, and adult population size change). Methods: We collected detailed colony measurements on over 450 honey bee colonies over four years across an agricultural-to-forested land use gradient in Michigan, USA. Results: We found that higher than normal precipitation in the preceding spring and fall was negatively correlated with colony size change and with foraged nectar mass, respectively. Sites surrounded by less agricultural land and more forested land also had fewer pupae by the end of summer. Conclusions: These inter-dependent colony metrics offer insights into environmental-plant-pollinator dynamics. Our finding that extreme weather events, associated with climate change, are negatively correlated with colony performance point to likely lagged effects of weather on pollinator floral resources. Landscapes managed with climate-resilient, temporally continuous floral resources are likely to support pollinators. Capturing extreme weather phenomena in field studies is a valuable way to investigate the associations between land use, climate change and biological systems. However, caution should be taken in overinterpreting observational studies, so further research is needed.

Landscape Ecology↗

USGS2007

Water-quality and ancillary data collected from the Arroyo Colorado near Rio Hondo, Texas, 2006

The Arroyo Colorado is in the lower Rio Grande Valley of southern Texas and extends from near Mission, Texas, eastward to the Laguna Madre estuarine and coastal marine system, which separates Padre Island from the Texas mainland. Streamflow in the Arroyo Colorado primarily is sustained by effluent from municipal wastewater-treatment plants along the stream banks. Since 1986, the tidal segment of the Arroyo Colorado from the port of Harlingen to the Laguna Madre has been designated by the State of Texas as an impaired water body because of low dissolved oxygen concentrations. Efforts to develop predictive water-quality models for the tidal segment of the Arroyo Colorado have been hampered by a lack of physical, biological, and biochemical data. Specifically, data on primary algal productivity, nutrient cycling, sediment deposition rates, and the relations between these processes and dissolved oxygen dynamics in the stream have been inadequate to support water-quality modeling efforts. The U.S. Geological Survey, in cooperation with the Texas Commission on Environmental Quality, did a study in 2006 to collect data associated with primary algal productivity, nutrient cycling, and dissolved oxygen dynamics in the tidal segment (2201) of the Arroyo Colorado near Rio Hondo. Specific objectives of the study were to (1) characterize water quality by measuring basic properties; (2) characterize the concentrations of carbon and nutrients, biochemical oxygen demand, total organic carbon, total suspended solids, and volatile suspended solids; (3) measure the seasonal differences of nutrient-dependent algal growth and algal production in the water column; (4) measure oxygen respiration or production rates; and (5) measure rates of sediment deposition.

Data Series↗

USGS1926

Shore phases of the Green River formation in northern Sweetwater County, Wyoming

For the last two years the writer has been engaged in a detailed study of the Green River formation and its oil shale. In order to arrive at an intelligent interpretation of this great series of lacustrine beds, the field study has been focused upon the marginal phases of the deposits and the associated formations, to determine, first, so far as possible from the geologic and biologic evidence recorded there, the environmental conditions that prevailed when these beds were laid down, such as the geologic history and physical configuration of the basin of deposition the mode of filling, the sources and nature of the materials, and the climatic conditions under which the deposits accumulated. From the same evidence the writer has also endeavored to determine the kinds and relative abundance of both plant and animal life that existed in the Green River lake and on the adjacent land. Such evidence is fragmentary, as was to be expected, but it serves well as a basis for fur her study and interpretation.

Wyoming↗