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USGS2005

Occurrence of fecal-indicator bacteria and protocols for identification of fecal-contamination sources in selected reaches of the West Branch Brandywine Creek, Chester County, Pennsylvania

The presence of fecal-indicator bacteria indicates the potential presence of pathogens originating from the fecal matter of warm-blooded animals. These pathogens are responsible for numerous human diseases ranging from common diarrhea to meningitis and polio. The detection of fecal-indicator bacteria and interpretation of the resultant data are, therefore, of great importance to water-resource managers. Current (2005) techniques used to assess fecal contamination within the fluvial environment primarily assess samples collected from the water column, either as grab samples or as depth- and (or) width-integrated samples. However, current research indicates approximately 99 percent of all bacteria within nature exist as attached, or sessile, bacteria. Because of this condition, most current techniques for the detection of fecal contamination, which utilize bacteria, assess only about 1 percent of the total bacteria within the fluvial system and are, therefore, problematic. Evaluation of the environmental factors affecting the occurrence and distribution of bacteria within the fluvial system, as well as the evaluation and modification of alternative approaches that effectively quantify the larger population of sessile bacteria within fluvial sediments, will present water-resource managers with more effective tools to assess, prevent, and (or) eliminate sources of fecal contamination within pristine and impaired watersheds. Two stream reaches on the West Branch Brandywine Creek in the Coatesville, Pa., region were studied between September 2002 and August 2003. The effects of sediment particle size, climatic conditions, aquatic growth, environmental chemistry, impervious surfaces, sediment and soil filtration, and dams on observed bacteria concentrations were evaluated. Alternative approaches were assessed to better detect geographic sources of fecal contamination including the use of turbidity as a surrogate for bacteria, the modification and implementation of sandbag bacteria samplers, and the use of optical brighteners. For the purposes of this report, sources of bacteria were defined as geographic locations where elevated concentrations of bacteria are observed within, or expected to enter, the main branch of the West Branch Brandywine Creek. Biologic sources (for example, waterfowl) were noted where applicable; however, no specific study of biologic sources (such as bacterial source tracking) was conducted. Data indicated that specific bacterial populations within fluvial sediments could be related to specific particle-size ranges. This relation is likely the result of the reduced porosity and permeability associated with finer sediments and the ability of specific bacteria to tolerate particular environments. Escherichia coli (E. coli) showed a higher median concentration (2,160 colonies per gram of saturated sediment) in the 0.125 to 0.5-millimeter size range of natural sediments than in other ranges, and enterococcus bacteria showed a higher median concentration (61,830 colonies per gram of saturated sediment) in the 0.062 to 0.25-millimeter size range of natural sediments than in other ranges. There were insufficient data to assess the particle-size relation to fecal coliform bacteria and (or) fecal streptococcus bacteria. Climatic conditions were shown to affect bacteria concentrations in both the water column and fluvial sediments. Drought conditions in 2002 resulted in lower overall bacteria concentrations than the more typically wet year of 2003. E. coli concentrations in fluvial sediment along the Coatesville study reach in 2002 had a median concentration of 92 colonies per gram of saturated sediment; in 2003, the median concentration had risen to 4,752 colonies per gram of saturated sediment. Symbiotic relations between bacteria and aquatic growth were likely responsible for increased bacteria concentrations observed within an impoundment area on the Coatesville study reach. This reach showed evidence of elevated aquatic growth and sharp increases in E. coli concentrations from upstream to downstream through the impoundment area in both 2002 and 2003. In 2003, E. coli concentrations within the waters column increased from 940 colonies per 100 milliliters upstream to 6,000 colonies per 100 milliliters at the dam crest. Given that these bacteria likely resulted from natural bacterial regrowth, the use of E. coli as an indicator of fecal contamination was severely impaired. Variable environmental conditions along the West Branch Brandywine Creek made the common field-chemical parameters of specific conductance, temperature, pH, and dissolved oxygen ineffective and (or) impossible to use for the determination of inputs of fecal contamination. Extreme variations in chemical gradients commonly were related to the urban/industrial signature of the watershed. For example, during base-flow sampling in 2002, specific-conductance values exceeding 1,000 microsiemens per centimeter observed in effluent from a local steel mill. This effluent raised the specific conductance within the West Branch Brandywine from just above 200 microsiemens per centimeter upstream from the outfall to just below 500 microsiemens per centimeter downstream from the outfall. These chemical gradients also, likely, had an effect on the initial colonization of bacteria, the formation of biofilms, and the persistence of certain types of bacteria along the study reach. Data collected in 2003 indicated that nutrients increased during both base-flow and stormflow conditions along the Coatesville study reach. For example, during base-flow sampling in 2003, 20 pounds of phosphorus was shown to enter the West Branch Brandywine Creek along the Coatesville study reach. The largest contributors to this base-flow nutrient load were likely two wastewater-treatment facilities adjacent to the study reach. During stormflow sampling in 2003, 480 pounds of phosphorus was shown to enter the West Branch Brandywine Creek along the Coatesville study reach. Data, along with other research, indicated the largest contributor to this stormflow nutrient load was likely remobilized sediment originating from a large dam impoundment. These elevated nutrient concentrations were considered sufficient to promote accelerated aquatic growth along the reach. Data collected in 2003 showed that wastewater constituents entered the West Branch Brandywine Creek largely from urban storm-sewer systems. Samples from the primary storm sewer for the city of Coatesville had detections for 20 of 69 wastewater constituents. These constituents included both strong and weak indicators of fecal contamination and generally indicated the storm-sewer system along the Coatesville study reach was a likely source of fecal-indicator bacteria and fecal contamination under base-flow conditions. By comparison, 5 constituents were detected in samples from the upstream end of the reach, and 10 constituents were detected in samples from the downstream end of the reach. During stormflow, numbers of detections were similar along the entire length of the study reach-five in samples from the upstream end, eight in samples from the center of the reach, and seven in samples from the downstream end of the reach. These data indicate that point sources (such as culverts and pipes, septic systems, and wastewater-treatment facilities) are not likely the origin of bacteria contamination during stormflow. The bacteria concentrations observed during stormflow events probably result from remobilized sessile bacteria stored within fluvial sediments. In this case, these bacteria should not be considered indicators of current fecal contamination. Impervious surfaces were found to increase bacteria concentrations along the West Branch Brandywine Creek because contaminated runoff from impervious areas generally flows into, and is concentrated within, the confines of the local storm-sewer system. During 2002, storm-sewer outfalls draining impervious areas were associated with all major locations of elevated bacterial concentrations (greater than 1,200 colonies per gram of saturated sediment) in fluvial sediments. During 2003, wetter conditions and overall bacteria concentrations higher than in 2002 resulted in point sources of bacterial contamination becoming less pronounced; however, the storm-sewer system, draining adjacent impervious areas, was still observed to be the primary source of bacteria along the reach. Where stormwater and (or) other runoff from these areas was allowed to infiltrate and (or) flow through wetland and riparian buffers, bacteria concentrations were not observed to be elevated above background levels commonly observed throughout similar areas of the same reach. Two run-of-the-river dams along the Coatesville study reach were evaluated for their effects on observed bacterial concentrations. These dams were shown to have greater or lesser effects on bacterial concentrations depending on the size of the structure and the capacity of the structure to impede flows. The smaller upstream dam had an approximate height of 3 feet and showed little observed effect on measured turbidity values; these data indicated that the dam did not effectively impede the flow of water or sediment within the West Branch Brandywine Creek. Consequently, this small dam did not show any observed effect on bacterial concentrations either upstream or downstream of the structure. The larger dam, near the middle of the reach, had an approximate height of 20 feet and showed greater effects on both turbidity and bacteria concentrations. The capacity of the larger dam to impede flows, combined with nutrients entering the reach, resulted in increased biologic activity throughout the impoundment area. Within this larger impoundment, enterococcus bacteria populations were observed to decrease sharply and E. coli bacteria populations were observed to increase sharply as flow approached the dam crest. All bacteria levels were then observed to drop to background levels, in both the water column and fluvial sediment, immediately downstream from the dam crest. Additional study is required to determine the cause for this rapid die off. Turbidity was assessed as a potential surrogate for E. coli bacteria. Regression analysis indicated higher turbidity levels usually can indicate higher concentrations of bacteria (R2 = 0.67), but the relation was too sporadic on the West Branch Brandywine Creek to use turbidity as a surrogate for estimated bacteria concentrations. Evaluation of data from individual base-flow and stormflow events resulted in variable and generally poor statistical relations between E. coli bacteria and turbidity (R2 values ranged from 0.02 to 0.94). Sandbag samplers were used in 2003 to determine their suitability for the assessment of fecal contamination. Sandbag samplers rely on the ability of bacteria to attach to surfaces and use the larger sessile bacteria populations instead of the more commonly used planktonic bacteria populations. E. coli bacteria concentrations observed in the sandbag samplers, after 1 week in place, were similar to those found within natural sediments collected concurrently. Enterococcus bacteria concentrations within the same sandbag samplers were not similar, and were generally lower, than those observed within the natural sediments. This discrepancy was likely because sand within the samplers was sieved to a size that was likely too coarse for enterococcus bacteria to persist. Optical-brightener samplers were installed along with each sandbag sampler. Optical brighteners are additives used in common household detergents; therefore, detection of optical brighteners, along with elevated fecal-indicator bacteria concentrations, strongly indicates a link to humans. Positive results for optical brighteners were detected only at the outfalls of two sewage-treatment facilities; because of treatment of the effluent from these facilities, these samples did not have elevated bacteria concentrations. The lack of additional positive results was largely because this method is not sensitive to low concentrations of optical brighteners.

Pennsylvania↗
USGS2011

Flood-frequency analyses from paleoflood investigations for Spring, Rapid, Boxelder, and Elk Creeks, Black Hills, western South Dakota

Flood-frequency analyses for the Black Hills area are important because of severe flooding of June 9-10, 1972, that was caused by a large mesoscale convective system and caused at least 238 deaths. Many 1972 peak flows are high outliers (by factors of 10 or more) in observed records that date to the early 1900s. An efficient means of reducing uncertainties for flood recurrence is to augment gaged records by using paleohydrologic techniques to determine ages and magnitudes of prior large floods (paleofloods). This report summarizes results of paleoflood investigations for Spring Creek, Rapid Creek (two reaches), Boxelder Creek (two subreaches), and Elk Creek. Stratigraphic records and resulting long-term flood chronologies, locally extending more than 2,000 years, were combined with observed and adjusted peak-flow values (gaged records) and historical flood information to derive flood-frequency estimates for the six study reaches. Results indicate that (1) floods as large as and even substantially larger than 1972 have affected most of the study reaches, and (2) incorporation of the paleohydrologic information substantially reduced uncertainties in estimating flood recurrence. Canyons within outcrops of Paleozoic rocks along the eastern flanks of the Black Hills provided excellent environments for (1) deposition and preservation of stratigraphic sequences of late-Holocene flood deposits, primarily in protected slack-water settings flanking the streams; and (2) hydraulic analyses for determination of associated flow magnitudes. The bedrock canyons ensure long-term stability of channel and valley geometry, thereby increasing confidence in hydraulic computations of ancient floods from modern channel geometry. Stratigraphic records of flood sequences, in combination with deposit dating by radiocarbon, optically stimulated luminescence, and cesium-137, provided paleoflood chronologies for 29 individual study sites. Flow magnitudes were estimated from elevations of flood deposits in conjunction with hydraulic calculations based on modern channel and valley geometry. Reach-scale paleoflood chronologies were interpreted for each study reach, which generally entailed correlation of flood evidence among multiple sites, chiefly based on relative position within stratigraphic sequences, unique textural characteristics, or results of age dating and flow estimation. The FLDFRQ3 and PeakfqSA analytical models (assuming log-Pearson Type III frequency distributions) were used for flood-frequency analyses for as many as four scenarios: (1) analysis of gaged records only; (2) gaged records with historical information; (3) all available data including gaged records, historical flows, paleofloods, and perception thresholds; and (4) the same as the third scenario, but ?top fitting? the distribution using only the largest 50 percent of gaged peak flows. The PeakfqSA model is most consistent with procedures adopted by most Federal agencies for flood-frequency analysis and thus was (1) used for comparisons among results for study reaches, and (2) considered by the authors as most appropriate for general applications of estimating low-probability flood recurrence. The detailed paleoflood investigations indicated that in the last 2,000 years all study reaches have had multiple large floods substantially larger than in gaged records. For Spring Creek, stratigraphic records preserved a chronology of at least five paleofloods in approximately (~) 1,000 years approaching or exceeding the 1972 flow of 21,800 cubic feet per second (ft 3 /s). The largest was ~700 years ago with a flow range of 29,300-58,600 ft 3 /s, which reflects the uncertainty regarding flood-magnitude estimates that was incorporated in the flood-frequency analyses. In the lower reach of Rapid Creek (downstream from Pactola Dam), two paleofloods in ~1,000 years exceeded the 1972 flow of 31,200 ft 3 /s. Those occurred ~440 and 1,000 years ago, with flows of 128,000-256,000 and 64,000-128,000 ft 3 /s, respectively. Five smaller paleofloods of 9,500-19,000 ft 3 /s occurred between ~200 and 400 years ago. In the upper reach of Rapid Creek (above Pactola Reservoir), the largest recorded floods are substantially smaller than for lower Rapid Creek and all other study reaches. Paleofloods of ~12,900 and 12,000 ft 3 /s occurred ~1,000 and 1,500 years ago. One additional paleoflood (~800 years ago) was similar in magnitude to the largest gaged flow of 2,460 ft 3 /s Boxelder Creek was treated as having two subreaches because of two tributaries that affect peak flows. During the last ~1,000 years, paleofloods of ~39,000-78,000 ft 3 /s and 40,000-80,000 ft 3 /s in the upstream subreach have exceeded the 1972 peak flow of 30,800 ft 3 /s. One other paleoflood was similar to the second largest gaged flow (16,400 ft 3 /s in 1907). For the downstream subreach, paleofloods of 61,300-123,000 ft 3 /s and 52,500-105,000 ft 3 /s in the last ~1,000 years have substantially exceeded the 1972 flood (50,500 ft 3 /s). Four additional paleofloods had flows between 14,200 and 33,800 ft 3 /s. The 1972 flow on Elk Creek (10,400 ft 3 /s) has been substantially exceeded at least five times in the last 1,900 years. The largest paleoflood (41,500-124,000 ft 3 /s) was ~900 years ago. Three other paleofloods between 37,500 and 120,000 ft 3 /s occurred between 1,100 and 1,800 years ago. A fifth paleoflood of 25,500-76,500 ft 3 /s was ~750 years ago. Considering analyses for all available data (PeakfqSA model) for all six study reaches, the 95-percent confidence intervals about the low-probability quantile estimates (100-, 200-, and 500-year recurrence intervals) were reduced by at least 78 percent relative to those for the gaged records only. In some cases, 95-percent uncertainty intervals were reduced by 99 percent or more. For all study reaches except the two Boxelder Creek subreaches, quantile estimates for these long-term analyses were larger than for the short-term analyses. The 1972 flow for the Spring Creek study reach (21,800 ft 3 /s) corresponds with a recurrence interval of ~400 years. Recurrence intervals are ~500 years for the 1972 flood magnitudes along the lower Rapid Creek reach and the upstream subreach of Boxelder Creek. For the downstream subreach of Boxelder Creek, the large 1972 flood magnitude (50,500 ft 3 /s) exceeds the 500-year quantile estimate by about 35 percent. The recurrence interval of ~100 years for 1972 flooding along the Elk Creek study reach is small relative to other study reaches along the eastern margin of the Black Hills. All of the paleofloods plot within the bounds of a national envelope curve, indicating that the national curve represents exceedingly rare floods for the Black Hills area. Elk Creek, lower Rapid Creek, and the downstream subreach of Boxelder Creek all have paleofloods that plot above a regional envelope curve; in the case of Elk Creek, by a factor of nearly two. The Black Hills paleofloods represent some of the largest known floods, relative to drainage area, for the United States. Many of the other largest known United States floods are in areas with physiographic and climatologic conditions broadly similar to the Black Hills-semiarid and rugged landscapes that intercept and focus heavy precipitation from convective storm systems. The 1972 precipitation and runoff patterns, previous analyses of peak-flow records, and the paleoflood investigations of this study support a hypothesis of distinct differences in flood generation within the central Black Hills study area. The eastern Black Hills are susceptible to intense orographic lifting associated with convective storm systems and also have high relief, thin soils, and narrow and steep canyons-factors favoring generation of exceptionally heavy rain-producing thunderstorms and promoting runoff and rapid concentration of flow into stream channels. In contrast, storm potential is smaller in and near the Limestone Plateau area, and storm runoff is further reduced by substantial infiltration into the limestone, gentle topography, and extensive floodplain storage. Results of the paleoflood investigations are directly applicable only to the specific study reaches and in the case of Rapid Creek, only to pre-regulation conditions. Thus, approaches for broader applications were developed from inferences of overall flood-generation processes, and appropriate domains for application of results were described. Example applications were provided by estimating flood quantiles for selected streamgages, which also allowed direct comparison with results of at-site flood-frequency analyses from a previous study. Several broad issues and uncertainties were examined, including potential biases associated with stratigraphic records that inherently are not always complete, uncertainties regarding statistical approaches, and the unknown applicability of paleoflood records to future watershed conditions. The results of the paleoflood investigations, however, provide much better physically based information on low-probability floods than has been available previously, substantially improving estimates of the magnitude and frequency of large floods in these basins and reducing associated uncertainty.

South Dakota↗