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USGS2017

Evaluation of harvest and information needs for North American sea ducks

Wildlife managers routinely seek to establish sustainable limits of sport harvest or other regulated forms of take while confronted with considerable uncertainty. A growing body of ecological research focuses on methods to describe and account for uncertainty in management decision-making and to prioritize research and monitoring investments to reduce the most influential uncertainties. We used simulation methods incorporating measures of demographic uncertainty to evaluate risk of overharvest and prioritize information needs for North American sea ducks (Tribe Mergini ). Sea ducks are popular game birds in North America, yet they are poorly monitored and their population dynamics are poorly understood relative to other North American waterfowl. There have been few attempts to assess the sustainability of harvest of North American sea ducks, and no formal harvest strategy exists in the U.S. or Canada to guide management. The popularity of sea duck hunting, extended hunting opportunity for some populations (i.e., special seasons and/or bag limits), and population declines have led to concern about potential overharvest. We used Monte Carlo simulation to contrast estimates of allowable harvest and observed harvest and assess risk of overharvest for 7 populations of North American sea ducks: the American subspecies of common eider ( Somateria mollissima dresseri ), eastern and western populations of black scoter ( Melanitta americana ) and surf scoter ( M . perspicillata ), and continental populations of white-winged scoter ( M . fusca ) and long-tailed duck ( Clangula hyemalis ). We combined information from empirical studies and the opinions of experts through formal elicitation to create probability distributions reflecting uncertainty in the individual demographic parameters used in this assessment. Estimates of maximum growth ( r max ), and therefore of allowable harvest, were highly uncertain for all populations. Long-tailed duck and American common eider appeared to be at high risk of overharvest (i.e., observed harvest < allowable harvest in 5–7% and 19–26% of simulations, respectively depending on the functional form of density dependence), whereas the other populations appeared to be at moderate risk to low risk (observed harvest < allowable harvest in 22–68% of simulations, again conditional on the form of density dependence). We also evaluated the sensitivity of the difference between allowable and observed harvest estimates to uncertainty in individual demographic parameters to prioritize information needs. We found that uncertainty in overall fecundity had more influence on comparisons of allowable and observed harvest than adult survival or observed harvest for all species except long-tailed duck. Although adult survival was characterized by less uncertainty than individual components of fecundity, it was identified as a high priority information need given the sensitivity of growth rate and allowable harvest to this parameter. Uncertainty about population size was influential in the comparison of observed and allowable harvest for 5 of the 6 populations where it factored into the assessment. While this assessment highlights a high degree of uncertainty in allowable harvest, it provides a framework for integration of improved data from future research and monitoring. It could also serve as the basis for harvest strategy development as management objectives and regulatory alternatives are specified by the management community.

PLoS ONE↗

USGS2008

Analytical validation of a real-time reverse transcription polymerase chain reaction test for Pan-American lineage H7 subtype Avian influenza viruses

A real-time reverse transcription polymerase chain reaction test for the identification of the H7 subtype in North American Avian influenza viruses (AIVs) was first reported in 2002; however, recent AIV surveillance efforts in wild birds and H7 outbreaks in poultry demonstrated that the 2002 test did not detect all H7 AIVs present in North and South America. Therefore, a new test, the 2008 Pan-American H7 test, was developed by using recently available H7 nucleotide sequences. The analytical specificity of the new assay was characterized with an RNA panel composed of 19 H7 viruses from around the world and RNA from all hemagglutinin subtypes except H16. Specificity for North and South American lineage H7 viruses was observed. Assay limits of detection were determined to be between 103 and 104 gene copies per reaction with in vitro transcribed RNA, and 100.0 and 10 0.8 50% egg infectious doses per reaction. The 2008 Pan-American H7 test also was shown to perform similarly to the 2002 test with specimens from chickens experimentally exposed to A/Chicken/BritishColumbia/314514-2/04 H7N3 highly pathogenic AIV. Furthermore, the 2008 test was able to detect 100% (n = 27) of the H7 AIV isolates recovered from North American wild birds in a 2006-2007 sample set (none of which were detected by the 2002 H7 test).

Journal of Veterinary Diagnostic Investigation↗

USGS2009

Experimental infection of a North American raptor, American kestrel (Falco sparverius), with highly pathogenic avian influenza virus (H5N1)

Several species of wild raptors have been found in Eurasia infected with highly pathogenic avian influenza virus (HPAIV) subtype H5N1. Should HPAIV (H5N1) reach North America in migratory birds, species of raptors are at risk not only from environmental exposure, but also from consuming infected birds and carcasses. In this study we used American kestrels as a representative species of a North American raptor to examine the effects of HPAIV (H5N1) infection in terms of dose response, viral shedding, pathology, and survival. Our data showed that kestrels are highly susceptible to HPAIV (H5N1). All birds typically died or were euthanized due to severe neurologic disease within 4-5 days of inoculation and shed significant amounts of virus both orally and cloacally, regardless of dose administered. The most consistent microscopic lesions were necrosis in the brain and pancreas. This is the first experimental study of HPAIV infection in a North American raptor and highlights the potential risks to birds of prey if HPAIV (H5N1) is introduced into North America.

PLoS ONE↗

USGS2008

Molt and aging criteria for four North American grassland passerines

Prairie and grassland habitats in central and western North America have declined substantially since settlement by Europeans (Knopf 1994) and many of the birds and other organisms that inhabit North American grasslands have experienced steep declines (Peterjohn and Sauer 1999; Johnson and Igl 1997; Sauer, Hines, and Fallon 2007). The species addressed here, Sprague’s Pipit (Anthus spragueii), Grasshopper (Ammodramus savannarum) and Baird’s (A. bairdii) sparrows, and Chestnut-collared Longspurs (Calcarius ornatus), are grassland birds that are of special conservation concern throughout their ranges due to declining populations and the loss of the specific grassland habitats required on both their breeding and wintering ranges (Knopf 1994, Davis and Sealy 1998, Davis 2003, Davis 2004, Jones and Dieni 2007). Population-trend data on grassland birds, while clearly showing declines, provides no information on the causes of population declines. Without demographic information (i.e., productivity and survivorship), there are no means to determine when in their life cycle the problems that are creating these declines are occurring, or to determine to what extent population trends are driven by factors that affect birth rates, death rates, or both (DeSante 1995). For migratory birds, population declines may be driven by factors on breeding grounds, during migration, and/or on wintering grounds. Lack of data on productivity and survivorship thus impedes the formulation of effective management and conservation strategies to reverse population declines (DeSante 1992). Furthermore, if deficiencies in survivorship are revealed, management strategies may need to address habitats on both breeding and non-breeding grounds, as well as along migratory pathways. One technique that helps inform management strategies is the biochemical analysis of isotopes and genetic markers, from the sampling of individual feathers from live birds (Smith et al. 2003, Pérez and Hobson 2006; Appendix). Determining demographic parameters and effectively sampling feathers to reveal connectivity between breeding and wintering grounds requires detailed knowledge of molt patterns and age determination criteria for the target species, in the hand. For example, productivity, survivorship, and territory acquisition may all be age-dependent, with first-year birds showing different patterns and responses than older birds. In many cases it may be possible to sample both a feather grown on the breeding grounds and one grown on the wintering grounds from a single individual, but knowledge of age-specific molt patterns, as well as an ability to recognize different feather generations, is needed to accomplish such a task. While some information on molt and aging criteria exists for grassland passerine species (Pyle 1997a), these species have been rarely captured during mark-recapture studies (Jones et al. 2007) and this information thus needs refining. There is a need for additional resources to assist field workers in determining molt patterns and age in captured individuals. Our objective is to describe molt and aging criteria for four grassland passerine species with the aid of digital photographs taken in the field. We hope that this document will be useful for researchers studying grassland species through capture and banding of live individuals on either the breeding or the wintering grounds. We present a general section on molt and aging techniques, followed by specific accounts for the four species treated: Sprague’s Pipits, Grasshopper and Baird sparrows, and Chestnut-collared Longspur. We also provide a brief protocol on collecting feather samples (Appendix).

Biological Technical Publication↗

USGS2013

Migration and wintering areas of American Bitterns ( Botaurus lentiginosus ) that summer in central North America as determined by satellite and radio telemetry, 1998-2003

Twenty adult male American Bitterns (Botaurus lentiginosus) were marked on summer range in central North America with satellite tracking Platform Transmitter Terminals (PTTs) to document migration routes and wintering range. Nineteen complete fall migration routes were documented for 17 individuals. Of the successful migrations, 63% (n = 12) went to southern Florida, 32% (n = 6) to southern Louisiana, and 5% (n = 1) to the Gulf coast of Texas. Spring migrations for nine birds were documented, and 78% (n = 7) showed fidelity to breeding range. Two complete migrations for two individuals were documented, and they demonstrated fidelity to winter range. The longest, fastest movement documented was 2,300 km in less than 74 hr. Extensive, post-breeding dispersal was not observed in the adult male American Bitterns in this study. Six male American Bitterns were marked with PTTs on winter range in Florida and Texas. Spring migration for these birds was documented to Nebraska, North Dakota, Saskatchewan, Manitoba and Ontario. Sixty-seven American Bitterns were marked with Very High Frequency radio transmitters on summer ranges, and 16% (n = 11) were located on wintering grounds used by the satellite-tracked birds, further documenting the importance of the Everglades and the Louisiana coast as winter habitat for American Bitterns that breed in Central North America.

Waterbirds↗

USGS2020

Waterfowl occurrence and residence time as indicators of H5 and H7 avian influenza in North American Poultry

Avian inﬂuenza (AI) affects wild aquatic birds and poses hazards to human health, food security, and wildlife conservation globally. Accordingly, there is a recognized need for new methods and tools to help quantify the dynamic interaction between wild bird hosts and commercial poultry. Using satellite-marked waterfowl, we applied Bayesian joint hierarchical modeling to concurrently model species distributions, residency times, migration timing, and disease occurrence probability under an integrated animal movement and disease distribution modeling framework. Our results indicate that migratory waterfowl are positively related to AI occurrence over North America such that as waterfowl occurrence probability or residence time increase at a given location, so too does the chance of a commercial poultry AI outbreak. Analyses also suggest that AI occurrence probability is greatest during our observed waterfowl northward migration, and less during the southward migration. Methodologically, we found that when modeling disparate facets of disease systems at the wildlife-agriculture interface, it is essential that multiscale spatial patterns be addressed to avoid mistakenly inferring a disease process or disease-environment relationship from a pattern evaluated at the improper spatial scale. The study offers important insights into migratory waterfowl ecology and AI disease dynamics that aid in better preparing for future outbreaks.

Scientific Reports↗

USGS2010

Limited evidence of trans-hemispheric movement of avian influenza viruses among contemporary North American shorebird isolates

Migratory routes of gulls, terns, and shorebirds (Charadriiformes) are known to cross hemispheric boundaries and intersect with outbreak areas of highly pathogenic avian influenza (HPAI). Prior assessments of low pathogenic avian influenza (LPAI) among species of this taxonomic order found some evidence for trans-hemispheric movement of virus genes. To specifically clarify the role of shorebird species in the trans-hemispheric movement of influenza viruses, assess the temporal variation of Eurasian lineages observed previously among North American shorebirds, and evaluate the necessity for continued sampling of these birds for HPAI in North America, we conducted a phylogenetic analysis of >700 contemporary sequences isolated between 2000 and 2008. Evidence for trans-hemispheric reassortment among North American shorebird LPAI gene segments was lower (0.88%) than previous assessments and occurred only among eastern North American isolates. Furthermore, half of the reassortment events occurred in just two isolates. Unique phylogenetic placement of these samples suggests secondary infection and or involvement of other migratory species, such as gulls. Eurasian lineages observed in North American shorebirds before 2000 were not detected among contemporary samples, suggesting temporal variation of LPAI lineages. Results suggest that additional bird migration ecology and virus phylogenetics research is needed to determine the exact mechanisms by which shorebirds in eastern North America become infected with LPAI that contain Eurasian lineage genes. Because of the low prevalence of avian influenza in non-eastern North America sites, thousands more shorebirds will need to be sampled to sufficiently examine genetic diversity and trans-hemispheric exchange of LPAI viruses in these areas. Alternatively, other avian taxa with higher virus prevalence could serve as surrogates to shorebirds for optimizing regional surveillance programs for HPAI through the LPAI phylogenetic approach.

Virus Research↗

USGS2005

Phylogeography of the American woodcock ( Scolopax minor ): Are management units based on band recovery data reflected in genetically based management units?

Information on population connectivity throughout the annual cycle has become more crucial, because populations of many migratory birds are in decline. One such species is the American Woodcock ( Scolopax minor ), which inhabits early-successional forests in eastern North America. Although band recoveries have proved useful for dividing populations of this game bird species into an Eastern Region and Central Region for management purposes, these data do not provide enough detail to determine the breeding population of origin of birds recovered on stopover and wintering areas. To obtain more fine-scale data, we undertook a phylogeographic study of American Woodcock populations throughout their primary breeding range in the eastern United States and Canada using mitochondrial DNA (mtDNA) sequences from the hypervariable control region I (CRI) and ND6 gene. Despite high haplotype diversity, nucleotide diversity was low and there was no phylogeographic structure among American Woodcock populations across the species range, with birds from many states and provinces in both management regions sharing identical haplotypes. Results suggest recent or ongoing gene flow among populations, with asymmetric movement of birds between migration flyways. As has been demonstrated for several other avian species in North America, American Woodcock appear to have undergone a rapid population expansion following the late Pleistocene glacial retreat. Thus, a combination of historical demographic factors and recent or ongoing gene flow mask any population structure based on mtDNA that might accrue from philopatry to breeding areas observed in studies of marked birds.

The Auk↗

USGS1984