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USGS2019

Advances in computational morphodynamics using the International River Interface Cooperative (iRIC) software

Results from computational morphodynamics modeling of coupled flow-bed-sediment systems are described for ten applications as a review of recent advances in the field. Each of these applications is drawn from solvers included in the public-domain International River Interface Cooperative (iRIC) software package. For mesoscale river features such as bars, predictions of alternate and higher mode river bars are shown for flows with equilibrium sediment supply and for a single case of oversupplied sediment. For microscale bed features such as bedforms, computational results are shown for the development and evolution of two-dimensional bedforms using a simple closure-based two-dimensional model, for two- and three-dimensional ripples and dunes using a three-dimensional large-eddy simulation flow model coupled to a physics-based particle transport model, and for the development of bed streaks using a three-dimensional unsteady Reynolds-averaged Navier-Stokes solver with a simple sediment-transport treatment. Finally, macroscale or channel evolution treatments are used to examine the temporal development of meandering channels, a failure model for cantilevered banks, the effect of bank vegetation on channel width, the development of channel networks in tidal systems, and the evolution of bedrock channels. In all examples, computational morphodynamics results from iRIC solvers are shown to compare well to observations of natural bed morphology. For each of the three scales investigated here, brief suggestions for future work and potential research directions are offered.

Earth Surface Processes and Landforms↗

USGS1966

Geological Survey Research 1966, Chapter A

'Geological Survey Research 1966' is the seventh annual review of the econamic and scientific work of the U.S. Geological Survey. As in previous years the purpose of the volume is to make available promptly to the public the highlights of Survey investigations. This year the volume consists of 4 chapters (A through D) of Professional Paper 550. Chapter A contains a summary of significant results, and the remaining chapters are made up of collections of short technical papers. Many of the results summarized in chapter A are discussed in greater detail in the short papers or in reports listed in 'Publications in Fiscal Year 1966,' beginning on page A265. The tables of contents for chapters B through D are listed on pages A259-A264. Numerous Federal, State, county, and municipal agencies listed on pages A211-A215 cooperated financially with the Geological Survey during fiscal 1966 and have contributed significantly to the results reported here. They are identified where appropriate in the short technical papers that have appeared in Geological Survey Research and in papers published cooperatively, but generally are not identified in the brief statements in chapter A. Many individuals on the staff of the Geological Survey have contributed to 'Geological Survey Research 1966.' Reference is made to only a few. Frank W. Trainer, Water Resources Division, was responsible for organizing and assembling chapter A and for critical review of papers in chapters B-D, assisted by Louis Pavlides, Geologic Division. Marston S. Chase, Publications Division, was in charge of production aspects of the series, assisted by Jesse R. Upperco in technical editing, and William H. Elliott and James R. Hamilton in planning and preparing illustrations. The volume for next year, 'Geological Survey Research 1967,' will be published as chapters af Professional Paper 5715. Previous volumes are listed below, with their series designations. Gealagical Survey Research 1960-Prof. Paper 400 Gealagical Survey Research 1961-Prof. Paper 424 Gealagical Survey Research 1962-Prof. Paper 450 Gealagical Survey Research 1963-Prof. Paper 475 Gealagical Survey Research 1964-Prof. Paper 501 Gealagical Survey Research 1965-Prof. Paper 525

Professional Paper↗

USGS2023

What is “big data” and how should we use it? The role of large datasets, secondary data, and associated analysis techniques in outdoor recreation research

With researchers increasingly interested in big data research, this conceptual paper describes how large datasets, secondary data, and associated analysis techniques can be used to understand outdoor recreation. Some types of large, secondary datasets that have been increasingly used in outdoor recreation research include social media, mobile device data, and trip reports or online reviews. First, we give a brief overview of big data terms and outline the steps involved in conducting big data research. In doing so, we describe data sources and analysis techniques relevant for outdoor recreation, and review how they have been applied in previous published works. We then describe opportunities, limitations, and considerations of using big data. Finally, we outline several questions researchers may consider when designing, conducting, reporting, and reviewing outdoor recreation research using big data. Overall, big data approaches can expand our understanding of outdoor recreation and, by addressing key questions, may help researchers harness the strengths of big data while ensuring quality and integrity.

Journal of Outdoor Recreation and Tourism↗

USGS2020

Moving beyond p<0.05 in ecotoxicology: A guide for practitioners

Statistical inferences play a critical role in ecotoxicology. Historically, Null Hypothesis Significance Testing (NHST) has been the dominant method for inference in ecotoxicology. As a brief and informal definition of the NHST approach, researchers compare (or test) an experimental treatment or observation against a hypothesis of no relationship or effect (the null hypothesis) using the collected data to see if the observed values are statistically significant given predefined error rates. The resulting probability of observing a value equal to or greater than the observed value assuming the null hypothesis is true is the p-value. Historically, criticisms of NHST have existed for almost a century and more recently these have grown to the point where statisticians, including the American Statistical Association, have felt the need to clarify the role of NHST and p-values in science beyond their current, common use. These limitations also exist in ecotoxicology. For example, a review of the 2010 Environmental Toxicology & Chemistry (ET&C) volume found many authors did not correctly report p-values. We repeated this review looking at the 2019 volume of ET&C and the incorrect reporting of p-values still occurred almost a decade later. Problems with NHST and p-values highlight the need for statistical inferences besides NHST, something that has long been known in ecotoxicology and the broader scientific and statistical communities. Furthermore, concerns such as these led the Executive Director of the American Statistical Association to recommend against use of statistical significance in 2019. In light of these criticisms, however, ecotoxicologists require alternative methods. In this paper, we describe some alternative methods including confidence intervals, regression analysis, dose-response curves, Bayes factors, survival analysis, and model selection. Lastly, we provide insights for what ecotoxicology might look like in a post-p-value world.

Environmental Toxicology and Chemistry↗

USGS1987

Errors in slope-area computations of peak discharges in mountain streams

During an evaluation of 70 slope-area measurements on higher-gradient streams (stream slopes greater than 0.002) throughout the United States, peak discharge measurements were found to be affected by n values, scour, expansion and contraction losses, viscosity, unsteady flow, number of cross sections, state of flow and stream slope. Problems due to measurement error can often be as great as or greater than 100% and leads to overestimation of the actual peak discharge. This can result in misleading maximum flood values, erroneous flood-frequency analyses and overdesign of flood-plain structures. A brief discussion of these problems, tentative solutions and research needs is presented. The critical-depth method of computing peak discharge provides the most reasonable results in higher-gradient streams.

Colorado↗

USGS2014

Report of the committee on runoff, 1936–37

Since the last meeting of the Section of Hydrology there has been a change in the organization and membership of some of the research‐committees, one relating to rainfall, of which Merrill Bernard is Chairman, and one relating to runoff, were created to replace the one committee which had functioned heretofore on both rainfall and runoff. This action by the officers provides for greater participation of the members of the Section in committees, and is a step well worth while. The personnel of the Committee as of May 1, 1937, is as follows: H. K. Barrows R. W. Davenport I. E. Houk F. T. Mavis F. F. Snyder M. M. Bernard R. S. Goodridge W. G. Hoyt A. F. Meyer H. C. Troxell E. S. Cullings R. E. Horton Joseph Jacobs C. R. Pettis C. O. Wisler I consider it an honor to act as Chairman of the Committee on Runoff but regret, however, that I have been unable as yet to coordinate thoroughly the work of the Committee or to inform myself adequately on many runoff‐experiments and research‐problems. Consequently, my report will be very brief and informal.

Eos, Transactions, American Geophysical Union↗

USGS2010

Overview of geomagnetism and paleomagnetism, 1983–1986

Michael Fuller, author of a similar overview four years ago, concluded that “...the next quadrennium promises to be a most interesting one, with plenty to keep us busy.” The 11 review papers that follow support his prediction; research in geomagnetism and paleomagnetism indeed has flourished over the last four years. In this brief overview, I will attempt to summarize what I perceive as important advances during the last quadrennium and to predict where research might lead during the next four years. These observations are seen through the eyes of a very specialized geophysicist; another author undoubtedly would see the past and future much differently.

Reviews of Geophysics↗

USGS1982

Volcanoes

Volcanoes destroy and volcanoes create. The catastrophic eruption of Mount St. Helens on May 18, 1980, made clear the awesome destructive power of a volcano. Yet, over a time span longer than human memory and record, volcanoes have played a key role in forming and modifying the planet upon which we live. More than 80 percent of the Earth's surface—above and below sea level—is of volcanic origin. Gaseous emissions from volcanic vents over hundreds of millions of years formed the Earth's earliest oceans and atmosphere, which supplied the ingredients vital to evolve and sustain life. Over geologic eons, countless volcanic eruptions have produced mountains, plateaus, and plains, which subsequent erosion and weathering have sculpted into majestic landscapes and formed fertile soils. Ironically, these volcanic soils and inviting terranes have attracted, and continue to attract, people to live on the flanks of volcanoes. Thus, as population density increases in regions of active or potentially active volcanoes, mankind must become increasingly aware of the hazards and learn not to "crowd" the volcanoes. People living in the shadow of volcanoes must live in harmony with them and expect, and should plan for, periodic violent unleashings of their pent-up energy. This booklet presents a generalized summary of the nature, workings, products, and hazards of the common types of volcanoes around the world, along with a brief introduction to the techniques of volcano monitoring and research.

General Interest Publication↗

USGS2012

MT3DMS: Model use, calibration, and validation

MT3DMS is a three-dimensional multi-species solute transport model for solving advection, dispersion, and chemical reactions of contaminants in saturated groundwater flow systems. MT3DMS interfaces directly with the U.S. Geological Survey finite-difference groundwater flow model MODFLOW for the flow solution and supports the hydrologic and discretization features of MODFLOW. MT3DMS contains multiple transport solution techniques in one code, which can often be important, including in model calibration. Since its first release in 1990 as MT3D for single-species mass transport modeling, MT3DMS has been widely used in research projects and practical field applications. This article provides a brief introduction to MT3DMS and presents recommendations about calibration and validation procedures for field applications of MT3DMS. The examples presented suggest the need to consider alternative processes as models are calibrated and suggest opportunities and difficulties associated with using groundwater age in transport model calibration.

Transactions of the ASABE↗

USGS2004

On the use of capture-recapture models in mist-net studies

Capture-recapture models provide a statistical framework for estimating population parameters from mist-net data. Although Cormack-Jolly-Seber and related models have recently been used to estimate survival rates of birds sampled with mist nets, we believe that the full potential for use of capture-recapture models has not been realized by many researchers involved in mist-net studies. We present a brief discussion of the overall framework for estimation using capture-recapture methods, and review several areas in which recent statistical methods can be, but generally have not yet been, applied to mist-net studies. These areas include estimation of (I) rates of movement among areas; (2) survival rates in the presence of transients: (3) population sizes or migrating birds: (4) proportion of birds alive but not present at a breeding site (one definition of proportion of nonbreeding birds in a population): (5) population change and recruitment: and (6) species richness. Using these models will avoid the possible bias associated with use of indices. and provide statistically valid variance estimates and inference.

Book chapter↗

USGS1999

Comparative ecology of exotic invaders and ecologically equivalent species of hydrobionths in the Great Lakes of the world: Results of Russia-USA cooperation

This paper presents brief fragments of the results of joint Russia-US research conducted through the cooperative project entitled, 'Comparative ecology of exotic invaders and ecologically equivalent species of hydrobionths in the Great Lakes of the world: Lake Baikal and the Laurentian Great Lakes.' The project was executed under the Agreement on Scientific Cooperation between the Institute of General and Experimental Biology (formerly Buryat Institute of Biology) of the Siberian Branch of the Russian Academy of Sciences and the Great Lakes Science Center of the U.S. Geological Survey.

Conference Paper↗

USGS1985

Water Resources Research Grant Program project descriptions, fiscal year 1985

Information on each of the 24 projects funded by the U.S. Geological Survey in FY 1985 under section 105 of Public Law 93-242 (the Water Resources Research Act of 1984) is presented, including the grant number, organization, the period of performance, and a brief description of the work to be carried out. (Lantz-PTT)

Open-File Report↗

USGS1996

Glutathione conjugation and contaminant transformation

The recent identification of a novel sulfonated metabolite of alachlor in groundwater and metolachlor in soil is likely the result of glutathione conjugation. Glutathione conjugation is an important biochemical reaction that leads, in the case of alachlor, to the formation of a rather difficult to detect, water-soluble, and therefore highly mobile, sulfonated metabolite. Research from weed science, toxicology, and biochemistry is discussed to support the hypothesis that glutathione conjugation is a potentially important detoxification pathway carried out by aquatic and terrestrial plants and soil microorganisms. A brief review of the biochemical basis for glutathione conjugation is presented. We recommend that multidisciplinary research focus on the occurrence and expression of glutathione and its attendant enzymes in plants and microorganisms, relationships between electrophilic substrate structure and enzyme activity, and the potential exploitation of plants and microorganisms that are competent in glutathione conjugation for phytoremediation and bioremediation.

Environmental Science & Technology↗

USGS2012

Improving scientific communication through the use of U.S. Geological Survey Video Podcasts

It is crucial that scientist find innovative ways of effectively communicating research to resource managers, public officials, and the general public. New technologies, such as video podcasts, are being used as an outreach tool to communicate results from the U.S Geological Survey (USGS) National Water-Quality Assessment (NAWQA) program. The purpose of these podcasts is to summarize scientific research and methods from the NAWQA program. Video podcasts are audio podcasts that incorporate video clips to illustrate ideas presented in simple, concise language with brief 3 to 5-minute films. The process of creating concise podcast messages expands the potential audience for communicating research findings, but the production of video podcasts requires adequate allocation of time and resources. Audience responses to NAWQA podcasts thus far indicate that video is an effective means of sharing scientific information with a broader audience.

Conference Paper↗

USGS2021

Bridging the research-implementation gap in avian conservation with translational ecology

The recognized gap between research and implementation in avian conservation can be overcome with translational ecology, an intentional approach in which science producers and users from multiple disciplines work collaboratively to co-develop and deliver ecological research that addresses management and conservation issues. Avian conservation naturally lends itself to translational ecology because birds are well studied, typically widespread, often exhibit migratory behaviors transcending geopolitical boundaries, and necessitate coordinated conservation efforts to accommodate resource and habitat needs across the full annual cycle. In this perspective, we highlight several case studies from bird conservation practitioners and the ornithological and conservation social sciences exemplifying the 6 core translational ecology principles introduced in previous studies: collaboration, engagement, commitment, communication, process, and decision-framing. We demonstrate that following translational approaches can lead to improved conservation decision-making and delivery of outcomes via co-development of research and products that are accessible to broader audiences and applicable to specific management decisions (e.g., policy briefs and decision-support tools). We also identify key challenges faced during scientific producer–user engagement, potential tactics for overcoming these challenges, and lessons learned for overcoming the research-implementation gap. Finally, we recommend strategies for building a stronger translational ecology culture to further improve the integration of these principles into avian conservation decisions. By embracing translational ecology, avian conservationists and ornithologists can be well positioned to ensure that future management decisions are scientifically informed and that scientific research is sufficiently relevant to managers. Ultimately, such teamwork can help close the research-implementation gap in the conservation sciences during a time when environmental issues are threatening avian communities and their habitats at exceptional rates and at broadening spatial scales worldwide.

Ornithological Applications↗

USGS2000

Preface paper to the Semi-Arid Land-Surface-Atmosphere (SALSA) Program special issue

The Semi-Arid Land-Surface-Atmosphere Program (SALSA) is a multi-agency, multi-national research effort that seeks to evaluate the consequences of natural and human-induced environmental change in semi-arid regions. The ultimate goal of SALSA is to advance scientific understanding of the semi-arid portion of the hydrosphere-biosphere interface in order to provide reliable information for environmental decision making. SALSA approaches this goal through a program of long-term, integrated observations, process research, modeling, assessment, and information management that is sustained by cooperation among scientists and information users. In this preface to the SALSA special issue, general program background information and the critical nature of semi-arid regions is presented. A brief description of the Upper San Pedro River Basin, the initial location for focused SALSA research follows. Several overarching research objectives under which much of the interdisciplinary research contained in the special issue was undertaken are discussed. Principal methods, primary research sites and data collection used by numerous investigators during 1997-1999 are then presented. Scientists from about 20 US, five European (four French and one Dutch), and three Mexican agencies and institutions have collaborated closely to make the research leading to this special issue a reality. The SALSA Program has served as a model of interagency cooperation by breaking new ground in the approach to large scale interdisciplinary science with relatively limited resources.

Conference Paper↗

USGS1988

Selawik National Wildlife Refuge land cover mapping project users guide

Title III of the Alaska National Interest Lands Conservation Act (ANILCA, 1980) established the Selawik National Wildlife Refuge (SNWR). Section 304 of the Act requires the Secretary of Interior to "prepare, and from time to time revise, a comprehensive conservation plan" for the refuge. Before developing a plan for the refuge, the Secretary shall "identify and describe--a) the populations and habitats of the fish and wildlife resources of the refuge; b) the special values of the refuge as well as any other archeological, cultural, ecological, geological, historical, palentological, scenic, or wilderness value of the refuge; c) areas within the refuge that are suitable for use as administrative sites or visitor facilities...; d) present the potential requirements for access with respect to the refuge...; and e) significant problems which may adversely affect the populations and habitats of fish and wildlife identified and described..." (ANILCA, 1980). Vegetation, water, and terrain (elevation, slope, and aspect) are the components of habitat and can be used in the determination of the above requirements. The U.S. Fish & Wildlife Service (USFWS) has the responsibility for collecting the resource information to address the research, management, development and planning requirements identified in Section 304. Because of the brief period provided by the Act for data collection, habitat mapping, and habitat assessment, the USFWS in cooperation with the U.S. Geological Survey's EROS Field Office, used digital Landsat multispectral scanner (MSS) data and digital terrain data to produce land cover and terrain maps. A computer assisted digital analysis of Landsat MSS data was used because coverage by aerial photographs was incomplete for the refuge and because the level of detail obtained from Landsat data was adequate to meet most USFWS research, management and planning needs. Relative cost and time requirements were also factors in the decision to use the digital analysis approach.

Alaska↗

USGS1987

Yukon Flats National Wildlife Refuge land cover mapping project user's guide

Title III of the Alaska National Interest Lands Conservation Act (ANILCA, 1980) established the Yukon Flats National Wildlife Refuge (YFNWR). Section 304 of the Act requires the Secretary of Interior to "prepare, and from time to time revise, a comprehensive conservation plan" for the refuge. Before developing a plan for the refuge, the Secretary shall "identify and describe--a) the populations and habitats of the fish and wildlife resources of the refuge; b) the special values of the refuge as well as any other archeological, cultural, ecological, geological , historical, palentological, scenic, or wilderness value of the refuge; c) areas within the refuge that are suitable for use as administrative sites or visitor facilities...; d) present the potential requirements for access with respect to the refuge...; and e) significant problems which may adversely affect the populations and habitats of fish and wildlife identified and described..." (ANILCA, 1980). Vegetation, water, and terrain (elevation, slope, and aspect) are the components of habitat and can be used in the determination of the above requirements. The U. S. Fish & Wildlife Service (USFWS) has the responsibility for collecting the resource information to address the research, management, development and planning requirements identified in Section 304. Because of the brief period provided by the Act for data collection, habitat mapping, and habitat assessment, the USFWS in cooperation with the U.S. Geological Survey's EROS Field Office, used digital Landsat multispectral scanner (MSS) data and digital terrain data to produce land cover and terrain maps. A computer assisted digital analysis of Landsat MSS data was used because coverage by aerial photographs was incomplete for much of the refuge and because the level of detail obtained from Landsat data was adequate to meet most USFWS research, management and planning needs. Relative cost and time requirements were also factors in the decision to use the digital analysis approach.

Alaska↗