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Introduction to this special issue on ocean acidification: the pathway from science to policy

Ocean acidification (OA) is a progressive decrease in the pH of seawater over decades, caused primarily by uptake of excess atmospheric CO2 and accompanied by changes in seawater carbonate chemistry. Scientific studies designed to examine the effects of anthropogenic carbon dioxide (CO2) emissions on global carbon fluxes have also led to the detection of OA. During the last decade, this phenomenon has surged to the attention of not only scientists but also policymakers and the public. OA chemistry is well understood and follows first principles of acid-base chemistry (e.g., Gattuso and Hansson, 2011; Box 1 in McLaughlin et al.). Today, total anthropogenic release of CO2 exceeds nine petagrams of carbon annually, with ~85% coming directly from industrial sources and ~15% from changes in land use. The three major sinks for this CO2 are: ~46% of CO2 emitted remains in the atmosphere, ~29% is absorbed by the terrestrial biosphere, and the ocean absorbs the remaining ~26% (Le Quéré et al., 2014), resulting in OA. Since the Industrial Revolution, global average surface ocean pH has dropped 0.1 unit (about a 30% increase in acidity; IPCC, 2013), and it is expected to drop another 0.3 to 0.4 units by 2100 (100-150% increase in acidity) if CO2 emissions continue in a business-as-usual scenario (Orr et al., 2005; IPCC, 2013). Some areas of the ocean, such as coastal regions, upwelling zones, and polar seas, may be subjected to much greater chemical perturbations from OA than indicated by such globally averaged values (e.g., Feely et al., 2008; Mathis et al.).

Oceanography

Transdisciplinary science: A path to understanding the interactions among ocean acidification, ecosystems, and society

The global nature of ocean acidification (OA) transcends habitats, ecosystems, regions, and science disciplines. The scientific community recognizes that the biggest challenge in improving understanding of how changing OA conditions affect ecosystems, and associated consequences for human society, requires integration of experimental, observational, and modeling approaches from many disciplines over a wide range of temporal and spatial scales. Such transdisciplinary science is the next step in providing relevant, meaningful results and optimal guidance to policymakers and coastal managers. We discuss the challenges associated with integrating ocean acidification science across funding agencies, institutions, disciplines, topical areas, and regions, and the value of unifying science objectives and activities to deliver insights into local, regional, and global scale impacts. We identify guiding principles and strategies for developing transdisciplinary research in the ocean acidification science community.

Oceanography

Building transparent data access for ocean observatories: Coordination of U.S. IOOS DMAC with NSF's OOI Cyberinfrastructure

The NOAA-led U.S. Integrated Ocean Observing System (IOOS) and the National Science Foundation's Ocean Observatories Initiative (OOI) have been collaborating since 2007 on advanced tools and technologies that ensure open access to ocean observations and models. Initial collaboration focused on serving ocean data via cloud computing-a key component of the OOI cyberinfrastructure (CI) architecture. As the OOI transitioned from planning to execution in the Fall of 2009, an OOI/IOOS team developed a customer-based "use case" to align more closely with the emerging objectives of OOI-CI team's first software release scheduled for Summer 2011 and provide a quantitative capacity for stress-testing these tools and protocols. A requirements process was initiated with coastal modelers, focusing on improved workflows to deliver ocean observation data. Accomplishments to date include the documentation and assessment of scientific workflows for two "early adopter" modeling teams from IOOS Regional partners (Rutgers-the State University of New Jersey and University of Hawaii's School of Ocean and Earth Science and Technology) to enable full understanding of data sources and needs; generation of all-inclusive lists of the data sets required and those obtainable through IOOS; a more complete understanding of areas where IOOS can expand data access capabilities to better serve the needs of the modeling community; and development of "data set agents" (software) to facilitate data acquisition from numerous data providers and conversions of the data format to the OOI-CI canonical form. ?? 2011 MTS.

Conference Paper

Estimating the pelagic ocean’s benefits to humanity can enhance ocean governance

The human footprint on the global ocean is ever-increasing, particularly with new ways to grow food in the ocean, new technologies in marine energy production as a way to resolve climate change, and transport and commerce expanding across the ocean. Yet, human activities in the ocean have long been managed using a sectoral approach (e.g., fisheries, biodiversity protection, energy production, shipping) rather than a holistic integration of sector interactions, trade-offs, costs, and benefits. Coordination across sectors is now more critical than ever, not only because of the expanding human footprint but also because of climate change impacts on the ocean. Sustainable global ocean use can support the Blue Economy while also reversing negative climate impacts on the ocean. Advancements in science and technology, along with increasing momentum on global commitments to sound ocean governance, and science diplomacy internationally can support sustainable ocean use with accurate and timely information about the status and trends in the ocean’s ecosystem services (benefits) to society. Near-real time information about ecosystem services’ dynamics is critical to policymaking for a sustainable Blue Economy that works for nature and people in an ever-changing ocean. Here, we propose seven principles for ecosystem service assessments, essentially to international science diplomacy, for consideration by global marine policy communities.

Marine Policy

2010 Joint United States-Canadian Program to explore the limits of the Extended Continental Shelf aboard U.S. Coast Guard Cutter Healy--Cruise HLY1002

In August and September 2010, the U.S. Geological Survey, in cooperation with Natural Resources Canada, Geological Survey of Canada, conducted bathymetric and geophysical surveys in the Beaufort Sea and eastern Arctic Ocean aboard the U.S. Coast Guard Cutter Healy. The principal objective of this mission to the high Arctic was to acquire data in support of a delineation of the outer limits of the U.S. and Canadian Extended Continental Shelf in the Arctic Ocean, in accordance with the provisions of Article 76 of the United Nations Convention on the Law of the Sea. The Healy was accompanied by the Canadian Coast Guard icebreaker Louis S. St-Laurent. The scientific parties on board the two vessels consisted principally of staff from the U.S. Geological Survey (Healy), and the Geological Survey of Canada and the Canadian Hydrographic Service (Louis). The crew also included marine-mammal observers, Native-community observers, ice observers, and biologists conducting research of opportunity in the Arctic Ocean. Despite interruptions necessitated by three medical emergencies, the joint survey proved largely successful. The Healy collected 7,201 trackline-kilometers of swath (multibeam) bathymetry (47,663 square kilometers) and CHIRP subbottom data, with accompanying marine gravity measurements, and expendable bathythermograph data. The Louis acquired 3,673 trackline-kilometers of multichannel seismic (airgun) deep-penetration reflection data along 25 continuous profiles, as well as 34 sonobuoy refraction stations and 9,500 trackline-kilometers of single-beam bathymetry. The coordinated efforts of the two vessels resulted in seismic-reflection-profile data that were of much higher quality and continuity than if the data had been acquired with a single vessel alone. The equipment-failure rate of the seismic equipment aboard the Louis was greatly reduced when the Healy led as the ice breaker. When ice conditions proved too severe to deploy the seismic system, the Louis led the Healy, resulting in much improved quality of the swath bathymetric and CHIRP subbottom data in comparison with data collected either by the Healy in the lead or the Healy working alone. During periods when the Healy was operating alone (principally when the Louis was diverted for emergency medical evacuations or ship repairs), the Healy was able to deploy a piston-core-sampler (10 meters maximum potential recovery depending on configuration). The coring operations resulted in recovery of cores at five locations ranging from 2.4 to 5.7 meters in length from water depths ranging from 1,157 to 3,700 meters. One of these cores sited on the Alaskan margin recovered the first reported occurrence of methane hydrate from the Arctic Ocean. Ancillary science objectives, including ice observations and deployment of ice-monitoring buoys and water-column sampling to measure acidification of Arctic waters were successfully conducted. The water-column sampling included using 10 full-ocean-depth, water-sampling casts with accompanying conductivity-temperature-depth measurements. Except for the data deemed proprietary, data from the cruise have been archived and are available for download at the National Geophysical Data Center and at cooperating organizations. Outreach staff and guest teachers aboard the two vessels provided near-real-time connection between the research activities and the public through online blogs, web pages, and other media.

Open-File Report

Development of an integrated earthquake early warning system in Taiwan - Case for the Hualien area earthquakes

In order to explore the feasibility of an earthquake early warning system for Taipei, two prototype seismic early warning systems have been implemented in Hualien, about 120 km away. The Taiwan Rapid Earthquake Information Release (TREIRS) can routinely determine earthquake location and magnitude in about one minute after the earthquake occurred. However, this reporting time is too long for earthquake early warning purposes. A dense, real-time monitoring system composed of 8 strong-motion stations was installed in Hualien area for testing earthquake early warning capability. For the 27 earthquakes occurred during August 1998 to April 1999, this system has successfully reported earthquake information in about 18 sec after the origin time. Therefore, it provided about 15 sec of early warning time before shear waves arrival in the Taipei urban area. Based on our experience of these two systems, we are encouraged to proceed forward in the development of an earthquake early warning system.

Terrestrial, Atmospheric and Oceanic Sciences

Composition and trace element content of coal in Taiwan

To investigate the trace element contents of local coal, four coal samples were collected from operating mines in NW Taiwan. Detailed petrographic and chemical characterization analyses were then conducted. Analytical results indicate that (1) the samples were high volatile bituminous coal in rank with ash content ranging from 4.2 to 14.4% and with moisture content ranging from 2.7 to 4.6%; (2) the macerals were mostly composed of vitrinite with vitrinite reflectance less than 0.8%; (3) the sample of Wukeng mine has the highest Fe 2 O 3 (29.5%), Tl (54.8 ppm), Zn (140 ppm), and As (697 ppm) contents in ash and Hg (2.3 ppm) in the coal. If used properly, these coals should not present health hazards.

Terrestrial, Atmospheric and Oceanic Sciences

Comparing simulated carbon budget of a Lei bamboo forest with flux tower data

Bamboo forest ecosystem is the part of the forest ecosystem. The distribution area of bamboo forest is limited, but in somewhere, like south China, it has been cultivate for a long time with human management. As the climate change has been take great effect on forest carbon budget, many researchers pay attention to the carbon budget in bamboo forest. Moreover cultivative management had a significant impact on the bamboo forest carbon budget. In this study, we modified a terrestrial ecosystem model named Integrated Biosphere Simulator (IBIS) according the management of Lei bamboo forest. Some management, like fertilization, shoots harvesting and organic mulching in winter, had been incorporated into model. Then we had compared model results with the observation data from a Lei bamboo flux tower. The simulated and observed results had achieved good consistency. Our simulated Lei bamboo forest yearly net ecosystem productivity (NEP) was 0.41 kgC a -1 of carbon, which is very close to the observation data 0.45 kgC a -1 of carbon. And the monthly simulated results can take the change of carbon budget in each month, similar to the data we got from flux tower. It reflects that the modified IBIS model can characterize the growth of bamboo forest and perform the simulation well. And then two groups of simulations were set to evaluate effects of cultivative managements on Lei bamboo forests carbon budget. And results showed that both fertilization and organic mulching had taken positive effects on Lei bamboo forests carbon sequestration.

Terrestrial, Atmospheric and Oceanic Sciences

Technical Note: Harmonizing met-ocean model data via standard web services within small research groups

Work over the last decade has resulted in standardised web services and tools that can significantly improve the efficiency and effectiveness of working with meteorological and ocean model data. While many operational modelling centres have enabled query and access to data via common web services, most small research groups have not. The penetration of this approach into the research community, where IT resources are limited, can be dramatically improved by (1) making it simple for providers to enable web service access to existing output files; (2) using free technologies that are easy to deploy and configure; and (3) providing standardised, service-based tools that work in existing research environments. We present a simple, local brokering approach that lets modellers continue to use their existing files and tools, while serving virtual data sets that can be used with standardised tools. The goal of this paper is to convince modellers that a standardised framework is not only useful but can be implemented with modest effort using free software components. We use NetCDF Markup language for data aggregation and standardisation, the THREDDS Data Server for data delivery, pycsw for data search, NCTOOLBOX (MATLAB®) and Iris (Python) for data access, and Open Geospatial Consortium Web Map Service for data preview. We illustrate the effectiveness of this approach with two use cases involving small research modelling groups at NATO and USGS.

Ocean science and engineering

Spatiotemporal variability of light attenuation and net ecosystem metabolism in a back-barrier estuary

Quantifying system-wide biogeochemical dynamics and ecosystem metabolism in estuaries is often attempted using a long-term continuous record at a single site or short-term records at multiple sites due to sampling limitations that preclude long-term monitoring. However, differences in the dominant primary producer at a given location (e.g., phytoplankton versus benthic producers) control diel variations in dissolved oxygen and associated ecosystem metabolism, and they may confound metabolic estimates that do not account for this variability. We hypothesize that even in shallow, well-mixed estuaries there is strong spatiotemporal variability in ecosystem metabolism due to benthic and water-column properties, as well as ensuing feedbacks to sediment resuspension, light attenuation, and primary production. We tested this hypothesis by measuring hydrodynamic properties, biogeochemical variables (fluorescent dissolved organic matter – fDOM, turbidity, chlorophyll a fluorescence, dissolved oxygen), and photosynthetically active radiation (PAR) over 1 year at 15 min intervals at paired channel (unvegetated) and shoal (vegetated by eelgrass) sites in Chincoteague Bay, Maryland–Virginia, USA, a shallow back-barrier estuary. Light attenuation ( K dPAR ) at all sites was dominated by turbidity from suspended sediment, with lower contributions from fDOM and chlorophyll a . However, there was significant seasonal variability in the resuspension–shear stress relationship on the vegetated shoals, but not in adjacent unvegetated channels. This indicated that K dPAR on the shoals was mediated by submerged aquatic vegetation (SAV) and possibly microphytobenthos presence in the summer, which reduced resuspension and therefore K dPAR . We also found that gross primary production ( P g ) and K dPAR were significantly negatively correlated on the shoals and uncorrelated in the channels, indicating that P g over the vegetated shoals is controlled by a feedback loop between benthic stabilization by SAV and/or microphytobenthos, sediment resuspension, and light availability. Metabolic estimates indicated substantial differences in net ecosystem metabolism between vegetated and unvegetated sites, with the former tending towards net autotrophy in the summer. Ongoing trends of SAV loss in this and other back-barrier estuaries suggest that these systems may also shift towards net heterotrophy, reducing their effectiveness as long-term carbon sinks. With regards to temporal variability, we found that varying sampling frequency between 15 min and 1 d resulted in comparable mean values of biogeochemical variables, but extreme values were missed by daily sampling. In fact, daily resampling minimized the variability between sites and falsely suggested spatial homogeneity in biogeochemistry, emphasizing the need for high-frequency sampling. This study confirms that properly quantifying ecosystem metabolism and associated biogeochemical variability requires characterization of the diverse estuarine environments, even in well-mixed systems, and demonstrates the deficiencies introduced by infrequent sampling to the interpretation of spatial variability.

Maryland, Virginia

Impact of Hurricane Irma on coral reef sediment redistribution at Looe Key Reef, Florida, USA

Understanding event-driven sediment transport in coral reef environments is essential to assessing impacts on reef species, habitats, restoration, and mitigation, yet a global knowledge gap remains due to limited quantitative studies. Hurricane Irma made landfall in the Lower Florida Keys with sustained 209 km h −1 winds and waves greater than 8 m on 10 September 2017, directly impacting the Florida Reef Tract (FRT) and providing an opportunity to perform a unique comprehensive, quantitative assessment of its impact on coral reef structure and sediment redistribution. We used lidar and multibeam derived digital elevation models (DEMs) collected before and after the passing of Hurricane Irma over a 15.98 km 2 area along the lower FRT including Looe Key Reef to quantify changes in seafloor elevation, volume, and structure due to storm impacts. Elevation change was calculated at over 4 million point locations across 10 habitat types within this study area for two time periods using data collected (1) approximately 1 year before the passing of Irma and 3 to 6 months following the storm's impact as well as (2) 3 to 6 months after and up to 16.5 months after the storm. Elevation change data were then used to generate triangulated irregular network (TIN) models in ArcMap to calculate changes in seafloor volume during each time period. Our results indicate that Hurricane Irma was primarily a depositional event that increased mean seafloor elevation and volume at this study site by 0.34 m and up to 5.4 Mm 3 , respectively. Sediment was transported primarily west-southwest (WSW) and downslope, modifying geomorphic seafloor features including the migration of sand waves and rubble fields, formation of scour marks in shallow seagrass habitats, and burial of seagrass and coral-dominated habitats. Approximately 16.5 months after Hurricane Irma (during a 13-month period between 2017 and 2019), net erosion was observed across all habitats with mean elevation change of −0.15 m and net volume change up to −2.46 Mm 3 . Rates of elevation change during this post-storm period were 1 to 2 orders of magnitude greater than decadal and multi-decadal rates of change in the same location, and changes showed erosion of approximately 50 % of sediment deposited during the storm event as seafloor sediment distribution began to re-equilibrate to non-storm sea-state conditions. Our results suggest that higher-resolution elevation change data collected over seasonal and annual time periods could enhance characterization and understanding of short-term and long-term rates and processes of seafloor change.

Florida

Seawater capacitance – a promising proxy for mapping and characterizing drifting hydrocarbon plumes in the deep ocean

Hydrocarbons released into the deep ocean are an inevitable consequence of natural seep, seafloor drilling, and leaking wellhead-to-collection-point pipelines. The Macondo 252 (Deepwater Horizon) well blowout of 2010 was even larger than the Ixtoc event in the Gulf of Campeche in 1979. History suggests it will not be the last accidental release, as deepwater drilling expands to meet an ever-growing demand. For those who must respond to this kind of disaster, the first line of action should be to know what is going on. This includes knowing where an oil plume is at any given time, where and how fast it is moving, and how it is evolving or degrading. We have experimented in the laboratory with induced polarization as a method to track hydrocarbons in the seawater column and find that finely dispersed oil in seawater gives rise to a large distributed capacitance. From previous sea trials, we infer this could potentially be used to both map and characterize oil plumes, down to a ratio of less than 0.001 oil-to-seawater, drifting and evolving in the deep ocean. A side benefit demonstrated in some earlier sea trials is that this same approach in modified form can also map certain heavy placer minerals, as well as communication cables, pipelines, and wrecks buried beneath the seafloor.

Ocean Science

Revision of the jawfish genus Lonchopisthus with description of a new Atlantic species (Teleostei: Opistognathidae)

Synonymies, diagnoses, descriptions, illustrations, an identification key, and meristic frequency tables are provided for all species of Lonchopisthus. Most of the skeletal anatomy of L. higmani is also illustrated. A new jawfish, Lonchopisthus ancistrus n. sp., is described from the Gulf of Mexico and off Honduras based on 21 specimens 41–89 mm SL. The new species differs from other congeners by the following combination of characters: the posterior end of the maxilla strongly hooked; the membrane connecting the maxilla and premaxilla and the inner membrane covering the posterior part of the dentary pale; segmented dorsal-fin rays 11–13, with unbranched rays 2–5; longitudinal body-scale rows 33–39; and very long pelvic fins, 39.4–75.3% SL. Lonchopisthus lemur (and its synonym L. meadi) shares most characters with L. ancistrus, but differs in having shorter pelvic fins, 19.2–29.9% SL; fewer longitudinal body-scale rows, 26–33; and 5 infraorbitals (vs. 4). Both are relatively deep-water species, occurring from 100 m to at least 375 m (vs. 3–139 m in the other species). Lonchopisthus micrognathus is unique in having no branched caudal-fin rays at any size and the middle caudal-fin rays with free tips that may be used to maintain tactile contact with the substrate while hovering over its burrow. The western Atlantic Lonchopisthus higmani and eastern Pacific L. sinuscalifornicus are sister species that differ from the other Atlantic species in having the posterior end of the maxilla with a notch instead of a strong hook, the opercle with a large dark blotch, and one supraneural (vs. no supraneural).

Journal of the Ocean Science Foundation

EARTHQUAKE HAZARDS IN THE OFFSHORE ENVIRONMENT.

This report discusses earthquake effects and potential hazards in the marine environment, describes and illustrates methods for the evaluation of earthquake hazards, and briefly reviews strategies for mitigating hazards. The report is broadly directed toward engineers, scientists, and others engaged in developing offshore resources. The continental shelves have become a major frontier in the search for new petroleum resources. Much of the current exploration is in areas of moderate to high earthquake activity. If the resources in these areas are to be developed economically and safely, potential earthquake hazards must be identified and mitigated both in planning and regulating activities and in designing, constructing, and operating facilities. Geologic earthquake effects that can be hazardous to marine facilities and operations include surface faulting, tectonic uplift and subsidence, seismic shaking, sea-floor failures, turbidity currents, and tsunamis.

Ocean science and engineering

Biology: Integrating core to essential variables (Bio-ICE) task team report for hard corals

The Interagency Ocean Observation Committee (IOOC) is chartered by the White House Office of Science and Technology Policy (OSTP) Subcommittee on Ocean Science and Technology (SOST). The purpose of the IOOC is to advise, assist, and make recommendations to the SOST on matters related to ocean observations via task teams such as the Biology - Integrating Core to Essential Variables (Bio-ICE) task team. The goal of the Bio-ICE task team is to advance the integration of biological observations from local, regional, and federal sources using best practices to inform national needs and ultimately feed seamlessly into the Global Ocean Observing System (GOOS), as appropriate. To accomplish this goal, and for the first time at the U.S. federal government level, a subgroup of the Bio-ICE task team focused on tropical, shallow-water (0-30 m) hard corals to identify commonalities between the U.S. Integrated Ocean Observing System (IOOS) core biological variable1 of “coral species and abundance,” the GOOS Essential Ocean Variable2 (EOV) “hard coral cover and composition,” the Group on Earth Observations Biological Observation Network (GEO BON) Essential Biodiversity Variables3 (EBVs), and the Global Climate Observing System (GCOS) Essential Climate Variables4 (ECVs) (Figure 1). The EOV data allows production of EBVs such as time series of maps of genetic composition, species populations, etc. Recognizing the complementarity of the different essential variable frameworks helps to promote best practices in observing and information management to facilitate data interoperability (Figure 1). The task team was charged with identifying where there are synergies in terms of spatial and temporal observing requirements and existing observation infrastructure and data delivery, including best practices and standard operating procedures. The task team also made suggestions to improve pathways for data flow for observations of these variables from Regional Associations of the U.S. IOOS, other nonfederal partners, and federal sources. The focus of the task team was on identifying and implementing best practices surrounding standardized data collection and data delivery to make continued progress toward adhering to the Findability, Accessibility, Interoperability, and Reuse (FAIR) and Collective benefit, Authority to control, Responsibility, and Ethics (CARE) data principles.

Task Team Report

The NASA Roadmap to Ocean Worlds

In this article, we summarize the work of the NASA Outer Planets Assessment Group (OPAG) Roadmaps to Ocean Worlds (ROW) group. The aim of this group is to assemble the scientific framework that will guide the exploration of ocean worlds, and to identify and prioritize science objectives for ocean worlds over the next several decades. The overarching goal of an Ocean Worlds exploration program as defined by ROW is to “identify ocean worlds, characterize their oceans, evaluate their habitability, search for life, and ultimately understand any life we find.” The ROW team supports the creation of an exploration program that studies the full spectrum of ocean worlds, that is, not just the exploration of known ocean worlds such as Europa but candidate ocean worlds such as Triton as well. The ROW team finds that the confirmed ocean worlds Enceladus, Titan, and Europa are the highest priority bodies to target in the near term to address ROW goals. Triton is the highest priority candidate ocean world to target in the near term. A major finding of this study is that, to map out a coherent Ocean Worlds Program, significant input is required from studies here on Earth; rigorous Research and Analysis studies are called for to enable some future ocean worlds missions to be thoughtfully planned and undertaken. A second finding is that progress needs to be made in the area of collaborations between Earth ocean scientists and extraterrestrial ocean scientists.

Astrobiology