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U.S. Geological Survey (USGS) Western Region; Santa Barbara Channel Coastal and Ocean Science

USGS coastal and ocean science in the Western United States and the Pacific integrates scientific expertise in geology, water resources, biology, and geography. Operating from 10 major science centers in the Western Region, the USGS is addressing a broad geographic and thematic range of important coastal and marine issues. In California, the Santa Barbara Channel represents one area of focus.

Fact Sheet

U.S. Geological Survey (USGS) Western Region: Coastal and Ocean Science

USGS Western Region Coastal and Ocean Science is interdisciplinary, collaborative, and integrates expertise from all USGS Disciplines, and ten of its major Science Centers, in Alaska, Hawai'i, California, Washington, and Oregon. The scientific talent, laboratories, and research vessels in the Western Region and across the Nation, strategically position the USGS to address broad geographic and oceanographic research topics. USGS information products inform resource managers and policy makers who must balance conservation mandates with increasing demands for resources that sustain the Nation's economy. This fact sheet describes but a few examples of the breadth of USGS science conducted in coastal, nearshore, and ocean environments along our Nation's West Coast and Pacific Islands.

Fact Sheet

Data services in ocean science with a focus on the biology

Biological ocean science has a long history; it goes back millennia, whereas the related data services have emerged in the recent digital era of the past decades. To understand where we come from—and why data services are so important—we will start by taking you back to the rise in the study of marine biology—marine biodiversity—and its key players, before immersing ourselves in the data life cycle, past and present joint global initiatives, and systems that allow(ed) scientists to more easily access biological data, online services through some simple keyboard strokes, and the many challenges we still encounter on a daily basis when dealing with these types of data.

Book chapter

Dynamic reusable workflows for ocean science

Digital catalogs of ocean data have been available for decades, but advances in standardized services and software for catalog search and data access make it now possible to create catalog-driven workflows that automate — end-to-end — data search, analysis and visualization of data from multiple distributed sources. Further, these workflows may be shared, reused and adapted with ease. Here we describe a workflow developed within the US Integrated Ocean Observing System (IOOS) which automates the skill-assessment of water temperature forecasts from multiple ocean forecast models, allowing improved forecast products to be delivered for an open water swim event. A series of Jupyter Notebooks are used to capture and document the end-to-end workflow using a collection of Python tools that facilitate working with standardized catalog and data services. The workflow first searches a catalog of metadata using the Open Geospatial Consortium (OGC) Catalog Service for the Web (CSW), then accesses data service endpoints found in the metadata records using the OGC Sensor Observation Service (SOS) for in situ sensor data and OPeNDAP services for remotely-sensed and model data. Skill metrics are computed and time series comparisons of forecast model and observed data are displayed interactively, leveraging the capabilities of modern web browsers. The resulting workflow not only solves a challenging specific problem, but highlights the benefits of dynamic, reusable workflows in general. These workflows adapt as new data enters the data system, facilitate reproducible science, provide templates from which new scientific workflows can be developed, and encourage data providers to use standardized services. As applied to the ocean swim event, the workflow exposed problems with two of the ocean forecast products which led to improved regional forecasts once errors were corrected. While the example is specific, the approach is general, and we hope to see increased use of dynamic notebooks across the geoscience domains.

Journal of Marine Science and Engineering

U.S. Geological Survey (USGS) Western Region: Alaska Coastal and Ocean Science

The U.S. Geological Survey (USGS), a bureau of the Department of the Interior (DOI), is the Nation's largest water, earth, and biological science and mapping agency. The bureau's science strategy 'Facing Tomorrow's Challenges - U.S. Geological Survey Science in the Decade 2007-2017' describes the USGS vision for its science in six integrated areas of societal concern: Understanding Ecosystems and Predicting Ecosystem Change; Climate Variability and Change; Energy and Minerals; Hazards, Risk, and Resilience; Environment and Wildlife in Human Health; and Water Census of the United States. USGS has three Regions that encompass nine geographic Areas. This fact sheet describes examples of USGS science conducted in coastal, nearshore terrestrial, and ocean environments in the Alaska Area.

Fact Sheet

U.S. Geological Survey (USGS) Western Region: Seabirds coastal and ocean science

From the cold, high Arctic area of Alaska to the warm, tropical Pacific area of Hawai'i, a diverse array of seabird species numbering in the millions of individuals live off the bounty of the Pacific Ocean. Many come to land only to nest and raise their young - these are species supremely adapted for life on the water, whether it be near the coast or hundreds of miles at sea. Those seabirds that reside in the North Pacific year-round are joined each summer by millions of migrant birds that leave the southern hemisphere in winter for better feeding conditions in the north. Seabirds in the Pacific remain one of the great wildlife spectacles on the earth. Yet, seabirds face a number of threats such as oil spills, introduction of predators to their nesting islands, and conflicts with fisheries. State and Federal agencies require increasingly sophisticated information on population dynamics, breeding biology, and feeding ecology to successfully manage these species and their ecosystems. Within the Western Region of the USGS, scientists from the Alaska Science Center (ASC), Western Ecological Research Center (WERC), and Pacific Islands Ecosystems Research Center are leading the way in conducting research on many of these little known species. Their aim is to improve our understanding of seabirds in the Pacific and to provide information to support informed management of the birds and their ecosystems.

Fact Sheet

Ocean science: Radiocarbon variability in the western North Atlantic during the last deglaciation

We present a detailed history of glacial to Holocene radiocarbon in the deep western North Atlantic from deep-sea corals and paired benthic-planktonic foraminifera. The deglaciation is marked by switches between radiocarbon-enriched and -depleted waters, leading to large radiocarbon gradients in the water column. These changes played an important role in modulating atmospheric radiocarbon. The deep-ocean record supports the notion of a bipolar seesaw with increased Northern-source deep-water formation linked to Northern Hemisphere warming and the reverse. In contrast, the more frequent radiocarbon variations in the intermediate/deep ocean are associated with roughly synchronous changes at the poles.

Science

U.S. Geological Survey (USGS), Western Region: Coastal ecosystem responses to influences from land and sea, Coastal and Ocean Science

Sea otters and the nearshore ecosystems they inhabit-from highly urbanized California to relatively pristine Alaska-are the focus of a new multidisciplinary study by scientists with the U.S. Geological Survey (USGS) and a suite of international, academic and government collaborators. The Coastal Ecosystem Responses to Influences from Land and Sea project will investigate the many interacting variables that influence the health of coastal ecosystems along the Northeast Pacific shore. These ecosystems face unprecedented challenges, with threats arising from the adjacent oceans and lands. From the ocean, challenges include acidification, sea level rise, and warming. From the land, challenges include elevated biological, geological and chemical pollutants associated with burgeoning human populations along coastlines. The implications of these challenges for biological systems are only beginning to be explored. Comparing sea otter population status indicators from around the northeastern Pacific Rim, will begin the process of defining factors of coastal ecosystem health in this broad region.

Fact Sheet

U.S. Geological Survey (USGS) Western Region Kasatochi Volcano Coastal and Ocean Science

Alaska is noteworthy as a region of frequent seismic and volcanic activity. The region contains 52 historically active volcanoes, 14 of which have had at least one major eruptive event since 1990. Despite the high frequency of volcanic activity in Alaska, comprehensive studies of how ecosystems respond to volcanic eruptions are non-existent. On August 7, 2008, Kasatochi Volcano, in the central Aleutian Islands, erupted catastrophically, covering the island with ash and hot pyroclastic flow material. Kasatochi Island was an annual monitoring site of the U.S. Fish and Wildlife Service, Alaska Maritime National Wildlife Refuge (AMNWR); therefore, features of the terrestrial and nearshore ecosystems of the island were well known. In 2009, the U.S. Geological Survey (USGS), AMNWR, and University of Alaska Fairbanks began long-term studies to better understand the effects of the eruption and the role of volcanism in structuring ecosystems in the Aleutian Islands, a volcano-dominated region with high natural resource values.

Fact Sheet

Black swans, wicked problems, and science during crises

Oceanic resources face challenges that are significant and widespread, including (but not limited to) overharvesting, climate change, selected stock collapse, coral reef decline, species extinction, pollution, and more. These challenges are the focus of much ocean science, which is helping to inform policy and guide management actions. The steady growth of research results and the emergence of new research needs have been systematically reviewed through periodic assessments, such as those of the Intergovernmental Oceanographic Commission (Valdés et al., 2010).

Oceanography

Pilot framework for fish habitat assessments across tidal and non tidal waters in the Patuxent River Basin

As part of the 2014 Chesapeake Bay Watershed Agreement, all Bay States and the District of Columbia have committed to improving the condition of the Bay, which includes a goal to achieve sustainable fisheries. One outcome under that broad goal is improved effectiveness of fish habitat conservation and preservation efforts. In support of that outcome, the U.S. Geological Survey Eastern Ecological Science Center (USGS-EESC) and the National Oceanic and Atmospheric Association’s National Centers for Coastal Ocean Science (NOAA-NCCOS) are actively developing datasets, methods, and analyses to conduct fish habitat assessments in the Chesapeake Bay watershed, guided by recommendations from a regional stakeholder workshop held by the Chesapeake Bay Program’s (CBP) Fish Habitat Action Team (FHAT) in 2018. The joint USGS and NOAA team has been collaborating on methods for conducting inland and estuarine assessments and exploring whether a seamless headwater to estuary assessment could be developed. The goals of this assessment are to benefit both State and Federal fisheries managers, help advance fisheries science, and provide beneficial information for the public. While past national and regional assessments (e.g. the National Fish Habitat Partnership National Assessment) treated inland and estuarine fish habitat conditions separately due to differences in environments, GIS data representation, and data availability, a seamless habitat assessment could be of value for a broad range of stakeholders as many fish species, several of which are invasive or under federal jurisdiction, use habitats across both inland and estuarine waters. This project developed a pilot framework, explored and tested methods necessary for a finer scale, seamless assessment across both inland and estuarine waters, and demonstrated its use. Although there was interest by the CBP FHAT for the generation of a Baywide fish habitat assessment that spanned tidal salt, tidal fresh, warm non-tidal and cold non-tidal waters, there are a myriad of implementation details and considerations around conducting a Baywide assessment across all four of these general habitat areas. Therefore, the practical need to conduct a tributary-specific pilot assessment arose. At the beginning of this pilot process, members of the FHAT were presented with a decision matrix to choose a study basin using factors such as data availability and tributary size. FHAT members chose the Patuxent River basin, which has been relatively well sampled and studied. Several spatial frameworks were considered before selection of an inclusive gridded framework for summary and analysis that represented inland drainage networks and landscape influences as well as estuarine bathymetry. A suite of landscape and in-water stressor variables were summarized into the framework and were largely generalized over time. In order to assess the viability of the framework, we chose to use species distribution modeling for each of the species to test the framework’s ability to predict habitat use of non-tidal resident, estuarine resident, and migratory species. Tessellated darter (Etheostoma olmstedi), American eel (Anguilla rostrata), and white perch (Morone americana) were chosen as illustrative fish species based on data availability, and differences in life history and habitat use. A nested modeling approach, which involved successive model runs at multiple scales (1000m, 100m, and 10m raster grids) was developed to examine differences in variable importance at different spatial scales and to enhance modeling efficiency. For white perch, a complementary modeling analysis was performed for variables available only in estuarine waters. For all testing, an ensemble modeling approach was conducted, using a suite of potential statistical techniques driven by model strength and variable predictive power. The statistical testing that we conducted was intended only to test the framework and modeling approach, and not to definitively predict all habitats where specific fish species might be present. The modeling we conducted to test the framework did have some limitations. For example, the spatial distribution of favorable habitat areas for white perch was likely influenced by the predominance of fish survey locations near the center channel of the river and the use of generalized in-water conditions. For all species, the use of juvenile and adult fish survey data limits the estimation of habitat use to those life stages. Despite such limitations of the data inputs and modeling approach, we found the framework could seamlessly predict fish habitat distribution across freshwater and tidal environments and integrate the influence of landscape stressors with local in-water factors. The developed framework presented to the Sustainable Fisheries Goal Implementation Team (GIT) and FHAT is informative and could potentially be used for other modeling applications in the Chesapeake Bay watershed and elsewhere. In particular the framework and modeling approach lend themselves to evaluating living resource distributions and underlying habitat conditions in shallow tidal waters and beyond, as recommended by the recent Comprehensive Evaluation of System Response (CESR) report from the Chesapeake Bay Program.

Maryland

Long-term ocean observing for international capacity development around tsunami early warning

The 2004 magnitude (M) 9.1 Sumatra-Andaman Islands earthquake in the Indian Ocean triggered the deadliest tsunami ever, killing more than 230,000 people. In response, the United Nations Educational, Scientific, and Cultural Organization (UNESCO) established three additional Intergovernmental Coordination Groups (ICGs) for the Tsunami and Other Coastal Hazards Early Warning System: for the Caribbean and Adjacent Regions (ICG/CARIBE-EWS), for the Indian Ocean, and for the Northeastern Atlantic, Mediterranean, and Connected Seas. Along with the ICG for the Pacific Ocean, which was established in 1965, one of the goals of the new ICGs was to improve earthquake and tsunami monitoring and early warning. This need was further demonstrated by the 2011 Great East Japan (Tōhoku-oki) earthquake and tsunami, which killed more than 20,000 people, and other destructive tsunamis that occurred in the Solomon Islands, Samoa, Tonga, Chile, Indonesia, and Peru. In response to the call to action by the UN Decade of Ocean Science for Sustainable Development (2021–2030), as well as the desired safe ocean outcome (von Hillebrandt-Andrade et al., 2021), the Intergovernmental Oceanographic Commission (IOC) of UNESCO approved the Ocean Decade Tsunami Programme in June 2021. One of its goals is to develop the capability to issue actionable alerts for tsunamis from all sources with minimum uncertainty within 10 minutes (Angove et al., 2019). While laudable, this goal presents complexities. Currently, warning depends on quick detection as well as the location and initial magnitude estimates of an earthquake that may generate a tsunami. Other factors that affect tsunamis, such as the faulting mechanism (how the faults slide past each other) and areal extent of the earthquake, currently take at least 20–30 minutes to forecast and are still subject to large uncertainties. Hence, agencies charged with tsunami early warning need to broadcast public alerts within minutes after an earthquake occurs but may struggle to meet this 10-minute goal without further technological advances, some of which are outlined in this article. To reduce loss of life through adequate tsunami warning requires global ocean-based seismic, sea level, and geodetic initiatives to detect high-impact earthquakes and tsunamis, combined with sufficient communication and education so that people know how to respond when they receive alerts and warnings. The United Nations International Strategy for Disaster Reduction defines an early warning system as “a set of capacities needed to generate and disseminate timely and meaningful warning information to enable individuals, communities, and organizations threatened by a hazard to prepare and to act appropriately and in sufficient time to reduce the possibility of harm or loss” (UNISDR, 2012). In short, a successful early warning system requires technology coupled with human factors (Kelman and Glantz, 2014). In this article, we explore case studies from Japan and Canada, where scientists are leading the way in incorporating ocean observing capabilities in their early warning systems. We also explore advancements and challenges in the Caribbean, an area with a complex tectonic environment that would benefit greatly from increased global ocean observing capabilities. We also explore physical and social science interventions necessary to reduce loss of life.

Oceanography

Biology: Integrating core to essential variables (Bio-ICE) task team report for marine mammals

Marine mammals are wide-ranging, relatively long-lived organisms that play a crucial role in maintaining healthy ocean ecosystems. Often referred to as ecosystem engineers and sentinel species in marine ecosystems, these charismatic megafauna feed at a variety of trophic levels, affecting food web dynamics and cycling of chemicals and nutrients in the water column as well as in benthic habitats, both nearshore and in the deep ocean. An understanding of their abundance and distribution is an essential starting point for evaluating their role in ocean ecosystems. Accordingly, marine mammals have been included among key variables to monitor in ocean observing systems, from core variables for the U.S. Integrated Ocean Observing System (IOOS) to an Essential Ocean Variable (EOV) for the Global Ocean Observing System (GOOS). They also contribute to several Essential Biodiversity Variables (EBVs) for the Group on Earth Observations Biodiversity Observation Network (GEO BON). Further, evaluation of the health of marine mammal populations will help deliver societal benefits by contributing to the UN Decade of Ocean Science for Sustainable Development; informing reporting activities such as the World Ocean Assessment; and supporting achievement of Sustainable Development Goal 14, the post-2020 framework for the Convention for Biological Diversity, and a new treaty for conservation and sustainable use of marine biodiversity beyond national jurisdiction. In the U.S., the National Marine Fisheries Service (NMFS) and the U.S. Fish and Wildlife Service (FWS) are required to produce stock assessments for marine mammals under the Marine Mammal Protection Act (MMPA, 16 U.S.C. §1371 et seq.). Stock assessment analyses require accurate, up to-date information on abundance and distribution to inform appropriate management and/or conservation measures. Despite the availability of information on abundance and distribution within the stock assessment reports, availability and accessibility of the underlying data to the broader ocean observing community and contribution to EOVs remain inconsistent.

Report

Portable coastal observatories

Ocean observational science is in the midst of a paradigm shift from an expeditionary science centered on short research cruises and deployments of internally recording instruments to a sustained observational science where the ocean is monitored on a regular basis, much the way the atmosphere is monitored. While satellite remote sensing is one key way of meeting the challenge of real-time monitoring of large ocean regions, new technologies are required for in situ observations to measure conditions below the ocean surface and to measure ocean characteristics not observable from space. One method of making sustained observations in the coastal ocean is to install a fiber optic cable from shore to the area of interest. This approach has the advantage of providing power to offshore instruments and essentially unlimited bandwidth for data. The LEO-15 observatory offshore of New Jersey (yon Alt et al., 1997) and the planned Katama observatory offshore of Martha's Vineyard (Edson et al., 2000) use this approach. These sites, along with other cabled sites, will play an important role in coastal ocean science in the next decade. Cabled observatories, however, have two drawbacks that limit the number of sites that are likely to be installed. First, the cable and the cable installation are expensive and the shore station needed at the cable terminus is often in an environmentally sensitive area where competing interests must be resolved. Second, cabled sites are inherently limited geographically to sites within reach of the cable, so it is difficult to cover large areas of the coastal ocean.

Massachusetts Bay

Evidence from 12-year study links ecosystem changes in the Gulf of Maine with climate change

Investigators at the Bigelow Laboratory for Ocean Sciences (East Boothbay, Maine) and the U.S. Geological Survey collaborated to study ecosystem changes in the Gulf of Maine. As part of the Gulf of Maine North Atlantic Time Series (GNATS), a comprehensive long-term study of hydrographic, biological, optical and chemical properties, multiple cruises have been conducted each year since 2001 by using a portable laboratory aboard different vessels (figure 1) and occasionally a remotely controlled glider (figure 2). Data collected during these cruises, when analyzed within the context of a century of climatological and streamflow data, document changes in temperature, salinity, and coastal ocean productivity that appear to be related to recent increases in precipitation and streamflow. These results are evidence of a link between changing hydrologic conditions on land and changes in coastal ocean productivity.

EcoSystem Indicator Partnership Journal

Great Lakes spatial priorities study

Spatial data about the bathymetry, habitat characteristics, underlying geology, and other features of the ocean and inland seas are essential for decision-making. Marine research and management organizations use these data to help ensure safe navigation, promote sustainable fisheries, extract energy, and protect marine habitats in the coastal and ocean waters of the U.S. Exclusive Economic Zone (EEZ) and Laurentian Great Lakes. Many of these organizations may have overlapping or shared mapping interests without knowing it. In a multi-jurisdictional planning environment, it can be challenging and cumbersome to determine where other entities have shared or overlapping mapping interests, especially across a transnational region such as the Great Lakes. State and provincial governments, federal governments, academia, tribes and First Nations, and other stakeholders from both the U.S. and Canada all have mapping interests across Great Lakes waters. Identifying and communicating target geographies for new data collection that are shared among multiple organizations can both help to avoid redundancy of new mapping efforts, and create opportunities for greater efficiency through collaboration. To address this issue, a spatial priorities study was conducted using a geospatial tool developed by the National Ocean Services National Centers for Coastal and Ocean Science (NCCOS). The tool provided an easy-to-use online interface in which programs can identify their priorities in a simple and straightforward way. This study asked representatives of Great Lakes management and science organizations to identify the areas for which they needed maps of lakebed features on a near-term, mid-term, and long-term timeframe, and why. Then, the responses were analyzed and overlaid to determine areas of shared mapping need and opportunity and to determine the types of map products needed. The analysis revealed high interest among multiple organizations in discrete geographies including the Minnesota and Wisconsin shoreline from Duluth to the eastern extent of the Bayfield Peninsula, Green Bay in Lake Michigan, and the southern coastlines of Lake Erie and Lake Ontario, the St. Marys River, and the northern Lake Superior coastal waters near Grand Portage, MN. Lower priority mapping interest were distributed widely across all lakes, but tended to be concentrated in nearshore areas (<30 m depth). The analysis also indicated that the top mapping justifications were Habitat/biota/natural area, Benthic exploration, Commercial and recreational fishing, and Scientific research. The top desired map product types were Elevation, Substrate/sub-bottom geologic characterization, and Habitat map/characterization, although participants on some lakes noted other less prevalent product types. Following from previously conducted NOAA and non-NOAA Federal spatial prioritization exercises, the results of this regional focus can help mapping organizations better understand how their priorities align with the needs of regional organizations, allow for more efficient coordination and funding, and enable partners to leverage assets and resources to fill their most pressing data and information gaps across Great Lakes waters. The U.S. Mapping Coordination Site hosts the results of this study and other spatial prioritization studies. Through this website, one can interact with the study results along with recent and planned mapping efforts. NOAA intends to update their spatial priorities on a three- to five-year basis. Future studies should strive to expand participation of federal agencies, state and local governments, federally-recognized tribes, academia, and private industry (among other stakeholders) to seek out ocean mapping partnerships in conjunction with the National Ocean Mapping, Exploration and Characterization (NOMEC) goals map once, use many times.”

Great Lakes

Who Knew? Inconnu

In 1999, I moved to Alaska to serve as unit leader of the U.S. Geological Survey Alaska Cooperative Fish and Wildlife Research Unit and professor of fisheries in the School of Fisheries and Ocean Sciences at the University of Alaska Fairbanks. What was unusual about this move was that before this I was an easterner and southerner, having done my graduate work in fisheries at Texas A&M University and been stationed in the Coop Unit Program in Ohio, West Virginia, and Maryland. I had never worked with salmonids of any sort. To me fish with adipose fins also had whiskers! I suddenly found myself working in the land of salmon experts, and I didn't even reliably know the names&mdash;scientific, common, or colloquial&mdash;of the five (or is it six?) common Pacific salmon species in Alaska. I had to quickly find a research niche that probably didn't involve salmon.

Fisheries

Survey report of NOAA Ship McArthur II cruises AR-04-04, AR-05-05 and AR-06-03: habitat classification of side scan sonar imagery in support of deep-sea coral/sponge explorations at the Olympic Coast National Marine Sanctuary

Habitat mapping and characterization has been defined as a high-priority management issue for the Olympic Coast National Marine Sanctuary (OCNMS), especially for poorly known deep-sea habitats that may be sensitive to anthropogenic disturbance. As a result, a team of scientists from OCNMS, National Centers for Coastal Ocean Science (NCCOS), and other partnering institutions initiated a series of surveys to assess the distribution of deep-sea coral/sponge assemblages within the sanctuary and to look for evidence of potential anthropogenic impacts in these critical habitats. Initial results indicated that remotely delineating areas of hard bottom substrate through acoustic sensing could be a useful tool to increase the efficiency and success of subsequent ROV-based surveys of the associated deep-sea fauna. Accordingly, side scan sonar surveys were conducted in May 2004, June 2005, and April 2006 aboard the NOAA Ship McArthur II to: (1) obtain additional imagery of the seafloor for broader habitat-mapping coverage of sanctuary waters, and (2) help delineate suitable deep-sea coral-sponge habitat, in areas of both high and low commercial-fishing activities, to serve as sites for surveying-in more detail using an ROV on subsequent cruises, Several regions of the sea floor throughout the OCNMS were surveyed and mosaicked at 1-meter pixel resolution. Imagery from the side scan sonar mapping efforts was integrated with other complementary data from a towed camera sled, ROVs, sedentary samples, and bathymetry records to describe geological and biological (where possible) aspects of habitat. Using a hierarchical deep-water marine benthic classification scheme (Greene et al. 1999), we created a preliminary map of various habitat polygon features for use in a geographical information system (GIS). This report provides a description of the mapping and groundtruthing efforts as well as results of the image classification procedure for each of the areas surveyed.

Washington