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Results for “Journal of Testing and Evaluation”

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At least 37 records · Page 2Linked to original sources
USGS1997

Assessment of liquefaction potential during earthquakes by Arias intensity

An Arias intensity approach to assess the liquefaction potential of soil deposits during earthquakes is proposed, using an energy-based measure of the severity of earthquake-shaking recorded on seismograms of the two horizontal components of ground motion. Values representing the severity of strong motion at depth in the soil column are associated with the liquefaction resistance of that layer, as measured by in situ penetration testing (SPT, CPT). This association results in a magnitude-independent boundary that envelopes initial liquefaction of soil in Arias intensity-normalized penetration resistance space. The Arias intensity approach is simple to apply and has proven to be highly reliable in assessing liquefaction potential. The advantages of using Arias intensity as a measure of earthquake-shaking severity in liquefaction assessment are: Arias intensity is derived from integration of the entire seismogram wave form, incorporating both the amplitude and duration elements of ground motion; all frequencies of recorded motion are considered; and Arias intensity is an appropriate measure to use when evaluating field penetration test methodologies that are inherently energy-based. Predictor equations describing the attenuation of Arias intensity as a function of earthquake magnitude and source distance are presented for rock, deep-stiff alluvium, and soft soil sites.

Journal of Geotechnical and Geoenvironmental Engin↗
USGS2013

Evaluation of thermal antinociceptive effects after intramuscular administration of hydromorphone hydrochloride to American kestrels ( Falco sparverius )

Objective —To evaluate the antinociceptive and sedative effects and duration of action of hydromorphone hydrochloride after IM administration to American kestrels ( Falco sparverius ). Animals —11 healthy 2-year-old American kestrels. Procedures —Hydromorphone (0.1, 0.3, and 0.6 mg/kg) and an equivalent volume of saline (0.9% NaCl) solution (control treatment) were administered IM to kestrels in a masked randomized complete crossover study design. Foot withdrawal response to a thermal stimulus was determined 30 to 60 minutes before (baseline) and 0.5, 1.5, 3, and 6 hours after treatment administration. Agitation-sedation scores were determined 3 to 5 minutes before each thermal test. Results —Hydromorphone at 0.6 mg/kg, IM, significantly increased the thermal foot withdrawal threshold, compared with the response after administration of saline solution, for up to 3 hours, and hydromorphone at 0.1, 0.3, and 0.6 mg/kg, IM, significantly increased withdrawal responses for up to 6 hours, compared with baseline values. No significant differences in mean sedation-agitation scores were detected between hydromorphone and saline solution treatments; however, appreciable sedation was detected in 4 birds when administered 0.6 mg of hydromorphone/kg. Conclusions and Clinical Relevance —Hydromorphone at the doses evaluated significantly increased the thermal nociception threshold for American kestrels for 3 to 6 hours. Additional studies with other types of stimulation, formulations, dosages, routes of administration, and testing times are needed to fully evaluate the analgesic and adverse effects of hydromorphone in kestrels and other avian species and the use of hydromorphone in clinical settings.

American Journal of Veterinary Research↗
USGS1982

Evaluation of AMOEBA: a spectral-spatial classification method

Muitispectral remotely sensed images have been treated as arbitrary multivariate spectral data for purposes of clustering and classifying. However, the spatial properties of image data can also be exploited. AMOEBA is a clustering and classification method that is based on a spatially derived model for image data. In an evaluation test, Landsat data were classified with both AMOEBA and a widely used spectral classifier. The test showed that irrigated crop types can be classified as accurately with the AMOEBA method as with the generally used spectral method ISOCLS; the AMOEBA method, however, requires less computer time.

Journal of Applied Photographic Engineering↗
USGS2015

Linking microbial community structure and microbial processes: An empirical and conceptual overview

A major goal of microbial ecology is to identify links between microbial community structure and microbial processes. Although this objective seems straightforward, there are conceptual and methodological challenges to designing studies that explicitly evaluate this link. Here, we analyzed literature documenting structure and process responses to manipulations to determine the frequency of structure-process links and whether experimental approaches and techniques influence link detection. We examined nine journals (published 2009–13) and retained 148 experimental studies measuring microbial community structure and processes. Many qualifying papers (112 of 148) documented structure and process responses, but few (38 of 112 papers) reported statistically testing for a link. Of these tested links, 75% were significant and typically used Spearman or Pearson's correlation analysis (68%). No particular approach for characterizing structure or processes was more likely to produce significant links. Process responses were detected earlier on average than responses in structure or both structure and process. Together, our findings suggest that few publications report statistically testing structure-process links. However, when links are tested for they often occur but share few commonalities in the processes or structures that were linked and the techniques used for measuring them.

FEMS Microbiology Ecology↗
USGS2006

Mourning dove hunting regulation strategy based on annual harvest statistics and banding data

Although managers should strive to base game bird harvest management strategies on mechanistic population models, monitoring programs required to build and continuously update these models may not be in place. Alternatively, If estimates of total harvest and harvest rates are available, then population estimates derived from these harvest data can serve as the basis for making hunting regulation decisions based on population growth rates derived from these estimates. I present a statistically rigorous approach for regulation decision-making using a hypothesis-testing framework and an assumed framework of 3 hunting regulation alternatives. I illustrate and evaluate the technique with historical data on the mid-continent mallard (Anas platyrhynchos) population. I evaluate the statistical properties of the hypothesis-testing framework using the best available data on mourning doves (Zenaida macroura). I use these results to discuss practical implementation of the technique as an interim harvest strategy for mourning doves until reliable mechanistic population models and associated monitoring programs are developed.

Journal of Wildlife Management↗
USGS2023

Field evaluation of semi-automated moisture estimation from geophysics using machine learning

Geophysical methods can provide three-dimensional (3D), spatially continuous estimates of soil moisture. However, point-to-point comparisons of geophysical properties to measure soil moisture data are frequently unsatisfactory, resulting in geophysics being used for qualitative purposes only. This is because (1) geophysics requires models that relate geophysical signals to soil moisture, (2) geophysical methods have potential uncertainties resulting from smoothing and artifacts introduced from processing and inversion, and (3) results from multiple geophysical methods are not easily combined within a single soil moisture estimation framework. To investigate these potential limitations, an irrigation experiment was performed wherein soil moisture was monitored through time, and several surface geophysical datasets indirectly sensitive to soil moisture were collected before and after irrigation: ground penetrating radar, electrical resistivity tomography (ERT), and frequency domain electromagnetics (FDEM). Data were exported in both raw and processed form, and then snapped to a common 3D grid to facilitate moisture prediction by standard calibration techniques, multivariate regression, and machine learning. A combination of inverted ERT data, raw FDEM, and inverted FDEM data was most informative for predicting soil moisture using a random regression forest model (one-thousand 60/40 training/test cross-validation folds produced root mean squared errors ranging from 0.025–0.046 cm 3 /cm 3 ). This cross-validated model was further supported by a separate evaluation using a test set from a physically separate portion of the study area. Machine learning was conducive to a semi-automated model-selection process that could be used for other sites and datasets to locally improve accuracy.

Connecticut↗
USGS1973

A spectrochemical method for determining the composition of native gold

The spectrochemical method described herein for determining trace, minor, and major element distribution in native gold is applicable over a wide range of particle sizes and over a very large concentration range. The matrices of samples and standards are very closely matched. The method was tested on 100 nuggets from a gold sample collected in Alaska. The data show that the method is adequate for 30 of the 31 elements checked; only the mercury values are not acceptable. The data also show that more than one sample is necessary for a complete evaluation of all elements in one geologic location.

Alaska↗
USGS2021

Novel diagnostic tests for the putative agent of bacterial gill disease in Pacific razor clams (Siliqua patula)

Nuclear inclusion X (NIX) is a gamma proteobacteria that infects the nuclei of gill epithelial cells in Pacific razor clams. NIX has been associated with clam die-offs in coastal Washington. A quantitative PCR (qPCR) assay was developed to detect NIX in Pacific razor clams, and assay specificity was confirmed by chromogenic in situ hybridization (CISH). Both tests were applied to evaluate NIX infections in wild Pacific razor clams collected during spring 2019. Consistent with results from earlier histopathological assessments, qPCR and CISH indicated 100% prevalence in razor clams from two Washington beaches and 0% prevalence from two Alaskan beaches.

Alaska, Washington↗
USGS2007

Supplemental materials for the analysis of capture-recapture data for polar bears in Western Hudson Bay, Canada, 1984-2004

Regehr and others (2007, Survival and population size of polar bears in western Hudson Bay in relation to earlier sea ice breakup: Journal of Wildlife Management, v. 71, no. 8) evaluated survival in relation to climatic conditions and estimated population size for polar bears (Ursus maritimus) in western Hudson Bay, Canada. Here, we provide supplemental materials for the analyses in Regehr and others (2007). We demonstrate how tag-return data from harvested polar bears were used to adjust estimates of total survival for human-caused mortality. We describe the sex and age composition of the capture and harvest samples and provide results for goodness-of-fit tests applied to capture-recapture models. We also describe the capture-recapture model selection procedure and the structure of the most supported model, which was used to estimate survival and population size.

Data Series↗
USGS2001

Evaluation of mixed-population flood-frequency analysis

A mixed population of flood flows was shown to cause quality-of-fit problems if a single-population flood-frequency distribution was used to describe the flood data. The three populations in this mix were "ordinary," tropical cyclone, and ice-jam-release floods. Parametric descriptions of the single and separated flood populations were evaluated using probability-plot correlation-coefficient tests. These tests quantified how well the flood-probability distributions agreed with plotting-position descriptions of the data and quantified the differences due to the mixed-population analysis. High outliers caused the high skewness found in the single- population analyses. The tropical cyclone component was underestimated by single-population analyses at gauging stations in Massachusetts that had little data.

Journal of Hydrologic Engineering↗
USGS2002

Development of a stream habitat index for the Northern Lakes and Forest Ecoregions

Physical habitat was quantified in 105 randomly selected streams across the Northern Lakes and Forests Ecoregion during 1998 and 1999 to develop a stream habitat index for the region. Physical habitat measures (106) were classified into four groups: substrate, instream cover, riparian zone–land use, and geomorphology–hydrology. Variable reduction procedures yielded seven variables: sinuosity, percent of substrate gravel or larger, percent substrate as detritus or muck, percent of bank with forested cover, amount of bank erosion, number of large logs per 100 m, and mean length of pools. Streams were separated by a gradient value of 3 m/km (low N = 70; high N = 35) and assigned to model and test data sets. For low-gradient streams in the model data set, the seven habitat variables explained 47% of the variation in index of biotic integrity (IBI) scores. To produce the habitat index, the coefficients in the regression were used to weight each of the seven variables. For low-gradient streams in the test data set, the habitat index explained 20% of the variation in IBI scores. A habitat index could not be developed for high-gradient sites, probably due to the low number of sites. Comparison of habitat to IBI scores provides resource managers with a method to evaluate the contribution of habitat quality to the IBI score.

Michigan, Minnesota, Wisconsin↗
USGS1977

Borehole geophysical investigations in the south Texas uranium district

Contrasts of electrical properties between uranium deposits and their host rocks in South Texas are subtle. In places where deposits are small or deep, conventional geophysical well-logging techniques and hole-to-hole measurements may be the only practical method to detect changes in rock properties associated with the occurrence of uranium ore deposits. Two separate ore-producing areas in South Texas were chosen for studying borehole geophysical techniques applied to uranium-exploration problems. Extensive measurements of physical properties were made on cores and taken from holes where electrical-resistivity, induced-polarization and gamam-ray logs were run. These analyses show that: (1) induced-polarization anomalies are caused by a change in pyrite content and clay-sized material content and (2) resistivity anomalies are associated with a change in clay-sized material content and cementation. In addition to conventional borehole techniques, hole-to-hole induced-polarization and resistivity tests were made in South Texas. These measurements were made by placing a current source down one hole and a receiver cable down an adjacent hole whose separation ranged from 30 to 300 m and hole depths varied from 80 to 270 m. These tests show that hole-to-hole measurements can be used to detect changes in physical properties, associated with uranium ore, that occur between boreholes. Hole-to-hole measurements provide a link between surface measurements and well logs and can minimize the amount of drilling needed to locate an ore deposit. Accordingly, borehole geophysics will become an increasingly important evaluation tool as mineral exploration goes deeper.

Texas↗
USGS2022

On the use of high-resolution and deep-learning seismic catalogs for short-term earthquake forecasts: Potential benefits and current limitations

Enhanced earthquake catalogs provide detailed images of evolving seismic sequences. Currently, these data sets take some time to be released but will soon become available in real time. Here, we explore whether and how enhanced seismic catalogs feeding into established short-term earthquake forecasting protocols may result in higher predictive skill. We consider three enhanced catalogs for the 2016–2017 Central Italy sequence, featuring a bulk completeness lower by at least two magnitude units compared to the real-time catalog and an improved hypocentral resolution. We use them to inform a set of physical Coulomb Rate-and-State (CRS) and statistical Epidemic-Type Aftershock Sequence (ETAS) models to forecast the space-time occurrence of M3+ events during the first 6 months of the sequence. We track model performance using standard likelihood-based metrics and compare their skill against the best-performing CRS and ETAS models among those developed with the real-time catalog. We find that while the incorporation of the triggering contributions from new small magnitude detections of the enhanced catalogs is beneficial for both types of forecasts, these models do not significantly outperform their respective near real-time benchmarks. To explore the reasons behind this result, we perform targeted sensitivity tests that show how (a) the typical spatial discretizations of forecast experiments ( 2 km) hamper the ability of models to capture highly localized secondary triggering patterns and (b) differences in earthquake parameters (i.e., magnitude and hypocenters) reported in different catalogs can affect forecast evaluation. These findings will contribute toward improving forecast model design and evaluation strategies for next-generation seismic catalogs.

Journal of Geophysical Research--Solid Earth↗
USGS2024

Impacts of artificial rearing on cisco Coregonus artedi morphology, including pugheadedness

Cisco ( Coregonus artedi Lesueur, 1818) in the Laurentian Great Lakes declined throughout the 19th and 20th centuries. Managers are attempting to restore Great Lakes cisco and other coregonines using multiple approaches, including stocking. A potential obstacle to these efforts is that artificially reared coregonines can display deformities and morphological differences compared to wild fish, but the impacts of artificial rearing on cisco morphology are not well understood. We compared morphologies of wild cisco to their artificially reared offspring, including one family that was exposed to three rearing temperature treatments. We found that artificially reared cisco had smaller eyes, shallower bodies, fewer gill rakers, and longer paired fins than their wild parents. We also found that artificially reared cisco were pugheaded, and this result held for another cisco population and rearing facility. Across the temperature treatments we tested, rearing temperatures did not impact the degree of pugheadedness or other morphological differences. Our results have important implications for coregonine restoration efforts. Future work should evaluate whether morphological differences that arise through artificial rearing affect cisco fitness in the wild.

Canadian Journal of Zoology↗
USGS2011

Quantitative polymerase chain reaction (PCR) for detection of aquatic animal pathogens in a diagnostic laboratory setting

Real-time, or quantitative, polymerase chain reaction (qPCR) is quickly supplanting other molecular methods for detecting the nucleic acids of human and other animal pathogens owing to the speed and robustness of the technology. As the aquatic animal health community moves toward implementing national diagnostic testing schemes, it will need to evaluate how qPCR technology should be employed. This review outlines the basic principles of qPCR technology, considerations for assay development, standards and controls, assay performance, diagnostic validation, implementation in the diagnostic laboratory, and quality assurance and control measures. These factors are fundamental for ensuring the validity of qPCR assay results obtained in the diagnostic laboratory setting.

Journal of Aquatic Animal Health↗
USGS2008

Effectiveness of piscicides for controlling round gobies (Neogobius melanostomus)

Round gobies (Neogobius melanostomus) were introduced to the Great Lakes presumably as a result of ballast water releases from seagoing freighters returning from European water bodies. These unwelcome fish have become established in the Great Lakes region and are expanding their range to suitable portions of other interior drainage basins including the Mississippi River traversing the central United States and the Trent-Severn waterway spanning south-central Ontario. If the invasion continues, use of chemical toxicants as a control measure may be necessary. Toxicity tests of the currently registered piscicides antimycin, rotenone, 3-trifluoromethyl-4-nitrophenol (TFM), and Bayluscide?? were conducted with three fish species native to the Great Lakes and round gobies collected from the Illinois Waterway. Tests indicated that round gobies are sensitive to all of the piscicides, however, the level of sensitivity is similar to that of the native fish species tested. Therefore, currently registered piscicides have limited potential to selectively remove round gobies. Bottom-release formulations of Bayluscide?? and antimycin were also evaluated as control agents for the normally bottom-dwelling round goby. Avoidance behavior tests demonstrated that the round goby did not react to the presence of either chemical. Therefore, the bottom-release formulations may have some application for the selective removal of round gobies, and may be one of the few tools presently available to fishery managers to help limit the range expansion of this invasive fish.

Journal of Great Lakes Research↗
USGS2012

Contaminants in stream sediments from seven U.S. metropolitan areas: Data summary of a National Pilot Study

This report presents data collected as a part of a synoptic survey of stream sediment contaminants, associated watershed characteristics and invertebrate responses in laboratory sediment toxicity tests from 98 streams (sites) in seven metropolitan study areas across the continental United States. The report presents methods, data, and sediment-quality guidelines, including the derivation of a new sediment pyrethroid probable effects concentration, for the purposes of relating measured contaminants to land use and toxicity evaluation. The study evaluated sites that ranged in their degree of relative urbanization within the study areas of Atlanta, Boston, Dallas-Fort Worth, Denver, Milwaukee-Green Bay, Salt Lake City, and Seattle-Tacoma. In all, 108 chemical analytes quantified in the study are presented, by class and number of individual compounds, as follows: polyaromatic hydrocarbons (PAHs) (28), organochlorine pesticides (OCs) (18), polychlorinated biphenyls (Aroclors) (3), pyrethroid insecticides (14), fipronil compounds (4), priority trace and other major elements (41). The potential of these sediments to cause toxicity to sediment-dwelling invertebrates was evaluated using two standard sediment toxicity tests: a 28-day growth and survival toxicity test with the amphipod Hyalella azteca, and a 10-day growth and survival toxicity test with the midge Chironomus dilutus. Further, approximately 95 relevant watershed and reach-level characteristics were generated and are presented to aid in interpretation and explanation of contaminant and toxicity patterns. Interpretation of the findings of this study, including the relationships with urbanization and other factors, the relationship between sediment toxicity and sediment chemistry in the seven study areas, and the sources and occurrence of pyrethroid insecticides, are discussed in detail in a forthcoming series of journal articles.

Boston;Atlanta;Milwaukee;Green Bay;Dallas;Fort Wor↗
USGS1973

Nutritional factors in the biochemical pathology of Corynebacterial kidney disease in the coho salmon (Oncorhynchus kisutch)

The influence of diet ingredient on the morbidity and biochemical pathogenesis of corynebacterial kidney disease was investigated using juvenile coho salmon ( Oncorhynchus kisutch ) fed the Abernathy dry ration made up with either corn gluten or cottonseed meal (isoprotein, isocaloric substitution). Evaluation of incidence of infection, pituitary activation and aspects of carbohydrate metabolism, acid-base balance, renal function, and hematopoietic activity showed that the actual disease incidence was about the same for both diets but the nonspecific stress of infection was more severe in fish fed the corn gluten.Discriminant function calculations combining four physiological parameters gave a probability of 0.86 for successfully diagnosing infected fish on the basis of these blood chemistry tests.

Journal of the Fisheries Research Board of Canada↗