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Assessing effects of pesticides on amphibians and reptiles: status and needs

Growing concern about the decline of certain amphibian populations and for conservation of amphibians and reptiles has led to renewed awareness of problems from pesticides. Testing amphibians and reptiles as a requirement for chemical registration has been proposed but is difficult because of the phylogenetic diversity of these groups. Information from the literature and research may determine whether amphibians and reptiles are adequately protected by current tests for mammals, birds, and fish. Existing information indicates that amphibians are unpredictably more resistant to certain cholinesterase inhibitors, and more sensitive to two chemicals used in fishery applications than could have been predicted. A single study on one species of lizard suggests that reptiles may be close in sensitivity to mammals and birds. Research on effects of pesticides on amphibians and reptiles should compare responses to currently tested groups and should seek to delineate those taxa and chemicals for which cross-group prediction is not possible. New tests for amphibians and reptiles should rely to the greatest extent possible on existing data bases, and should be designed for maximum economy and minimum harm to test animals. A strategy for developing the needed information is proposed. Good field testing and surveillance of chemicals in use may compensate for failures of predictive evaluations and may ultimately lead to improved tests.

Herpetological Journal↗

Climate-mediated competition in a high-elevation salamander community

The distribution of the federally endangered Shenandoah Salamander ( Plethodon shenandoah ) is presumed to be limited by competition with the Red-backed Salamander ( Plethodon cinereus ). In particular, the current distribution of P. shenandoah is understood to be restricted to warmer and drier habitats because of interspecific interactions. These habitats may be particularly sensitive to climate change, though the influence of competition may also be affected by temperature and relative humidity. We investigated the response of P. shenandoah to competition with P. cinereus under four climate scenarios in 3-dimensional mesocosms. The results suggest that, although climate change may alleviate competitive pressure from P. cinereus , warmer temperatures may also significantly influence the persistence of the species across its known range.

Journal of Herpetology↗

Phenotypic variation in Brook Trout Salvelinus fontinalis (Mitchill) at broad spatial scales makes morphology an insufficient basis for taxonomic reclassification of the species

It was recently proposed that there are three new species of Salvelinus with microendemic distributions in the Great Smoky Mountains National Park, Tennessee, USA. The three species of Salvelinus were hypothesized to be distinct from their congener Brook Trout S. fontinalis based on three meristic traits—pored lateral-line scales, vertebral counts, and number of basihyal teeth. After analyses that included specimens sampled from a larger portion of the geographic range of S. fontinalis , we conclude that the three populations of Salvelinus recently described as new species are not morphometrically distinct from Brook Trout and consider all three to be synonyms of S. fontinalis . Moreover, the low number of specimens originally examined conflates morphological differences among populations with sexual dimorphism and/or phenotypic plasticity, both of which are documented extensively in Brook Trout but were not controlled for in the species descriptions. While there is currently insufficient phenotypic or genotypic evidence to support the hypothesis of three new species that are distinct from S. fontinalis , we acknowledge the need to understand the unique selection pressures that shape evolutionary trajectories in small, isolated populations of Brook Trout and to conserve evolutionarily significant sources of genotypic and phenotypic diversity. To that end, we provide comments on research opportunities to support Brook Trout conservation, including the importance of collaborative, range-wide phylogenetic studies to identify the most appropriate scales of management efforts.

New York, Tennessee↗

Efficacy of automatic vocalization recognition software for anuran monitoring

Surveys of vocalizations are a widely used method for monitoring anurans, but it can be difficult to coordinate standardized data collection across a large geographic area. Digital automated recording systems (ARS) offer a low-cost method for obtaining samples of anuran vocalizations, but the number of recordings can easily overwhelm human listeners. We tested Song Scope, an automatic vocalization recognition software program for personal computers to determine if this type of machine learning approach is currently a viable solution for anuran monitoring. For three species, Song Scope scanned more than 200 h of recordings in 3-20 h at the settings we chose. The software misidentified true calls (false positive) at rates of 2.7%-15.8% per species and failed to detect calls (false negative) in 45%-51% of recordings. There exists a tradeoff between false positive and false negative errors, which can be adjusted by setting the minimum criteria for the recognition software. Users of this approach should carefully consider their reasons for monitoring and how they intend to use the data before creating a large monitoring network.

Louisiana↗

Amphibian population declines: 30 Years of progress in confronting a complex problem

In 1989, it dawned on participants at the First World Congress of Herpetology that observed declines in amphibian populations might actually be global in scope and unprecedented in severity. Three decades of research since then has produced an enormous increase in our knowledge of amphibian ecology and appreciation of the complexity of possible causes for amphibian population declines. In September 2019, 30 yr after the First World Congress ended, a day-long, international symposium on amphibian population declines was held at the Redpath Museum of McGill University in Montreal, Canada. Symposium participants drew upon the knowledge gained over three decades of study to look ahead with fresh ideas to address this vital aspect of the global decline of biodiversity. Despite tremendous progress over the past three decades there is still much about amphibian ecology, population biology, and pathology that remains unknown. Amphibian declines have turned out to be more complex than originally expected and the result of multiple possible causes acting across landscapes, among taxa, or between populations in ways that are not at all uniform. The papers in this special issue of Herpetologica , which stem from the symposium, explore much of our current understanding of amphibian declines and their causes.

Herpetologica↗

Herpetofaunal Inventories of the National Parks of South Florida and the Caribbean: Volume III. Big Cypress National Preserve

Amphibian declines and extinctions have been documented around the world, often in protected natural areas. Concern for this trend has prompted the U.S. Geological Survey and the National Park Service to document all species of amphibians that occur within U.S. National Parks and to search for any signs that amphibians may be declining. This study, an inventory of amphibian species in Big Cypress National Preserve, was conducted from 2002 to 2003. The goals of the project were to create a georeferenced inventory of amphibian species, use new analytical techniques to estimate proportion of sites occupied by each species, look for any signs of amphibian decline (missing species, disease, die-offs, and so forth.), and to establish a protocol that could be used for future monitoring efforts. Several sampling methods were used to accomplish these goals. Visual encounter surveys and anuran vocalization surveys were conducted in all habitats throughout the park to estimate the proportion of sites or proportion of area occupied (PAO) by each amphibian species in each habitat. Opportunistic collections, as well as limited drift fence data, were used to augment the visual encounter methods for highly aquatic or cryptic species. A total of 545 visits to 104 sites were conducted for standard sampling alone, and 2,358 individual amphibians and 374 reptiles were encountered. Data analysis was conducted in program PRESENCE to provide PAO estimates for each of the anuran species. All of the amphibian species historically found in Big Cypress National Preserve were detected during this project. At least one individual of each of the four salamander species was captured during sampling. Each of the anuran species in the preserve was adequately sampled using standard herpetological sampling methods, and PAO estimates were produced for each species of anuran by habitat. This information serves as an indicator of habitat associations of the species and relative abundance of sites occupied, but it will also be useful as a comparative baseline for future monitoring efforts. In addition to sampling for amphibians, all encounters with reptiles were documented. The sampling methods used for detecting amphibians are also appropriate for many reptile species. These reptile locations are included in this report, but the number of reptile observations was not sufficient to estimate PAO for reptile species. We encountered 35 of the 46 species of reptiles believed to be present in Big Cypress National Preserve during this study, and evidence exists of the presence of four other reptile species in the Preserve. This study found no evidence of amphibian decline in Big Cypress National Preserve. Although no evidence of decline was observed, several threats to amphibians were identified. Introduced species, especially the Cuban treefrog (Osteopilus septentrionalis), are predators and competitors with several native frog species. The recreational use of off-road vehicles has the potential to affect some amphibian populations, and a study on those potential impacts is currently underway. Also, interference by humans with the natural hydrologic cycle of south Florida has the potential to alter the amphibian community. Continued monitoring of the amphibian species in Big Cypress National Preserve is recommended. The methods used in this study were adequate to produce reliable estimates of the proportion of sites occupied by most anuran species, and are a cost-effective means of determining the status of their populations.

Open-File Report↗

Book review: Biology and conservation of North American tortoises

The charismatic North American tortoises hold a special place in our culture and natural history. Despite the perseverance of these tortoises over millions of years, biologists now question their ability to persist into the future. In light of documented declines, habitat loss, and numerous threats to tortoise populations, the editors gathered a diverse group of researchers to review what we have learned about this group after decades of study, to summarize gaps in the literature, and to reflect on how we may use the current state of knowledge to conserve these fascinating species. Initially intended as a focused review of the two most well-studied species in the genus Gopherus , G. agassizii (Mohave Desert Tortoise) and G. polyphemus (Gopher Tortoise), the book developed into a comprehensive treatment of the entire genus. The editors offer the work as a resource to professional biologists and agencies working with North American tortoises as well as a teaching aid, hobbyist’s reference, and casual read for nature-lovers—although we presume that the former group is more likely to benefit than the latter. Although the book’s size appears modest, the content delivers an in-depth look at the five recognized tortoise species. Review info: Biology and Conservation of North American Tortoises. Edited by David C. Rostal, Earl D. McCoy, and Henry R. Mushinsky, 2014. ISBN 978-1421413778, 190 pp.

Herpetological Review↗

Testing assumptions in the use of PIT tags to study movement of Plethodon salamanders

Studying the movements of organisms that live underground for at least a portion of their life history is challenging, given the state of current technology. Passive integrated transponders (PIT tags) provide a way to individually identify and, more recently, study the movement of smaller animals, including those that make subterranean movements. However, there are widespread assumptions of the use of PIT tags that remain problematic. We tested the effects of PIT-tag implantation on growth and survival, along with the effects of electromagnetic fields for reading PIT tags on behavior, of the smallest salamander that has been PIT-tagged: the Red-Backed Salamander. We found no effect of PIT tags on growth or survival. Using a mesocosm experiment, we also found that electromagnetic effects associated with reading PIT tags, had no effect on salamander behavior. Further, we describe a novel PIT antenna and soil mesocosm experimental arena for studying belowground movements of woodland salamanders. Collectively, these studies suggest that the use of PIT tags do not influence the growth, survival, or behavior of Red-Backed Salamanders. Given the challenges of studying salamanders that live underground and the impending changes in climate and landscapes, this research suggests that PIT tags remain a viable tool for studying the movement ecology of salamanders under global change.

Journal of Herpetology↗

Suppressing bullfrog larvae with carbon dioxide

Current management strategies for the control and suppression of the American Bullfrog ( Lithobates catesbeianus = Rana catesbeiana Shaw) and other invasive amphibians have had minimal effect on their abundance and distribution. This study evaluates the effects of carbon dioxide (CO 2 ) on pre- and prometamorphic Bullfrog larvae. Bullfrogs are a model organism for evaluating potential suppression agents because they are a successful invader worldwide. From experimental trials we estimated that the 24-h 50% and 99% lethal concentration (LC 50 and LC 99 ) values for Bullfrog larvae were 371 and 549 mg CO 2 /L, respectively. Overall, larvae that succumbed to experimental conditions had a lower body condition index than those that survived. We also documented sublethal changes in blood chemistry during prolonged exposure to elevated CO 2 . Specifically, blood pH decreased by more than 0.5 pH units after 9 h of exposure and both blood partial pressure of CO 2 (pCO 2 ) and blood glucose increased. These findings suggest that CO 2 treatments can be lethal to Bullfrog larvae under controlled laboratory conditions. We believe this work represents the necessary foundation for further consideration of CO 2 as a potential suppression agent for one of the most harmful invaders to freshwater ecosystems.

Journal of Herpetology↗

Blanchard's cricket frogs (Acris blanchardi) have re-expanded northward since mid-2000s: Landscape predictors of occupancy

Blanchard's Cricket Frogs ( Acris blanchardi ) declined along their northern range edge in the upper Midwest in the mid-to late 1900s. The causes of these declines remain poorly understood, as does the current status of this species and their habitat requirements. In 2024, we revisited more than 300 locations previously sampled between 2003 and 2008 along this range edge in Minnesota, Wisconsin, Iowa, and Illinois. We conducted roadside anuran call surveys at each site and extracted land cover information from the National Land Cover Database and a global stream layer. We developed a multi-species occupancy model, which included imperfect detection, species traits, and species associations, to test for changes in occupancy through time and determine whether environmental characteristics were associated with cricket frog presence. Blanchard's Cricket Frogs occupied more sites and occurred farther north in 2024 relative to the mid-2000s, suggesting a partial recolonization in the zone of previous decline. Forest, croplands, and latitude were negatively associated with cricket frog occupancy, whereas wetlands, river size, and development did not have strongly supported effects. Species associations implied that wetland permanence could have been an important determinant of occupancy, but we did not have this covariate information for many of our sites due to private ownership of surrounding lands. Causes of earlier declines remain largely unknown, and many previously occupied regions apparently remain devoid of cricket frogs. However, some populations have been expanding northward over the past two decades in the upper Midwest.

Iowa, Minnesota, Wisconsin↗

Scented guide ropes as a method to enhance brown treesnake (Boiga irregularis) trap capture success on Guam

Current methods for controlling the invasive Brown Treesnake ( Boiga irregularis ) on Guam include a modified minnow trap with a live mouse lure. We investigated the effects on capture success of augmenting these traps with scented guide ropes leading to trap entrances. Initial screening of scent preferences was based on time spent in scented and unscented arms of a Y-maze. Preferences of large and small snakes were scored for six different prey scents (live and carrion gecko, skink, and mouse). Large snakes spent more time in the maze arm scented with live gecko and carrion gecko, whereas small snakes spent more time in the arm scented with carrion mouse and carrion gecko. After the laboratory study, a pilot trapping session was conducted in the field using three treatments (live mouse-scented ropes, carrion gecko-scented ropes, and carrion mouse-scented ropes) and two controls (traps with unscented guide ropes and those with no ropes attached). Contrary to laboratory results, live mouse-scented ropes were most effective. We conducted a second trapping session using live mouse-scented ropes as well as the two controls used in the pilot study. For snakes of below-average to average condition, the number of captures for traps with live mouse-scented ropes was higher than for traps with no ropes. However, for snakes of above-average condition, there were no differences in capture rates between trap treatments. Overall, treatment effects were weaker than latent individual heterogeneity and the influence of snake body size, with large snakes trapped more readily.

Guam↗

The Amphibian Research and Monitoring Initiative (ARMI): 5-year report

The Amphibian Research and Monitoring Initiative (ARMI) is an innovative, multidisciplinary program that began in 2000 in response to a congressional directive for the Department of the Interior to address the issue of amphibian declines in the United States. ARMI’s formulation was cross-disciplinary, integrating U.S. Geological Survey scientists from Biology, Water, and Geography to develop a course of action (Corn and others, 2005a). The result has been an effective program with diverse, yet complementary, expertise. ARMI’s approach to research and monitoring is multiscale. Detailed investigations focus on a few species at selected local sites throughout the country; monitoring addresses a larger number of species over broader areas (typically, National Parks and National Wildlife Refuges); and inventories to document species occurrence are conducted more extensively across the landscape. Where monitoring is conducted, the emphasis is on an ability to draw statistically defensible conclusions about the status of amphibians. To achieve this objective, ARMI has instituted a monitoring response variable that has nationwide applicability. At research sites, ARMI focuses on studying species/environment interactions, determining causes of observed declines, and developing new techniques to sample populations and analyze data. Results from activities at all scales are provided to scientists, land managers, and policymakers, as appropriate. The ARMI program and the scientists involved contribute significantly to understanding amphibian declines at local, regional, national, and international levels. Within National Parks and National Wildlife Refuges, findings help land managers make decisions applicable to amphibian conservation. For example, the National Park Service (NPS) selected amphibians as a vital sign for several of their monitoring networks, and ARMI scientists provide information and assistance in developing monitoring methods for this NPS effort. At the national level, ARMI has had major exposure at a variety of meetings, including a dedicated symposium at the 2004 joint meetings of the Herpetologists’ League, the American Society of Ichthyologists and Herpetologists, and the Society for the Study of Amphibians and Reptiles. Several principal investigators have brought international exposure to ARMI through venues such as the World Congress of Herpetology in South Africa in 2005 (invited presentation by Dr. Gary Fellers), the Global Amphibian Summit, sponsored by the International Union for Conservation of Nature (IUCN) and Wildlife Conservation International, in Washington, D.C., 2005 (invited participation by Dr. P.S. Corn), and a special issue of the international herpetological journal Alytes focused on ARMI in 2004 (edited by Dr. C.K. Dodd, Jr.). ARMI research and monitoring efforts have addressed at least 7 of the 21 Threatened and Endangered Species listed by the U.S. Fish and Wildlife Service (California red-legged frog [Rana draytonii], Chiricahua leopard frog [R. chiricahuensis], arroyo toad [Bufo californicus], dusky gopher frog [Rana sevosa], mountain yellow-legged frog [R. muscosa], flatwoods salamander [Ambystoma cingulatum], and the golden coqui [Eleutherodactylus jasperi]), and 9 additional species of concern recognized by the IUCN. ARMI investigations have addressed time-sensitive research, such as emerging infectious diseases and effects on amphibians related to natural disasters like wildfire, hurricanes, and debris flows, and the effects of more constant, environmental change, like urban expansion, road development, and the use of pesticides. Over the last 5 years, ARMI has partnered with an extensive list of government, academic, and private entities. These partnerships have been fruitful and have assisted ARMI in developing new field protocols and analytic tools, in using and refining emerging technologies to improve accuracy and efficiency of data handling, in conducting amphibian disease, malformation, and environmental effects research, and in implementing a network of monitoring and research sites. Accomplishments from these endeavors include more than 40 publications on amphibian status and trends, nearly 100 publications on amphibian ecology and causes of declines, and over 30 methodological publications. Several databases have emerged as a result of ARMI and its partnerships; one, a digital atlas of ranges for all U.S. amphibian species, was used by the IUCN to display amphibian distribution maps in the Global Amphibian Assessment Project. Given the scope of ARMI and the panoply of projects, findings have had implications for policy. Investigations that demonstrate amphibian declines or illuminate causes of declines provide valuable information about habitat management, environmental effects, mechanisms for the spread of disease, and human/amphibian interfaces. This information has been made available to land managers, scientists, educators, Congress and other policymakers, and the public. The support afforded ARMI by Congress has been influential in the program’s development and success. The value of ARMI’s efforts will continue to increase as we are able to extend our studies spatially and temporally to answer critical questions with more confidence. We are using ARMI’s resources efficiently and continuing to develop innovative mechanisms for leveraging resources for maximum effectiveness during challenging financial times. This report is a 5-year retrospective of the structure, methodology, progress, and contributions to the broader scientific community that have resulted from this national USGS program. We evaluate ARMI’s success to date, with regard to the challenges faced by the program and the strengths that have emerged. We chart objectives for the next 5 years that build on current accomplishments, highlight areas meriting further research, and direct efforts to overcome existing weaknesses.

Scientific Investigations Report↗