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At least 37 records · Page 2Linked to original sources
USGS1999

Fishes of Missouri River, chute, and flood plain habitats: Chapter 4 in Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge (Refuge) is approximately 2,200 acres and is the first complete unit of the Refuge. Primary objectives of the Refuge are to create and restore diverse riverine aquatic habitats and reconnect the Missouri River to its flood plain where feasible. Management seeks to accomplish these objectives by encouraging natural processes of erosion, deposition, and succession to the greatest extent possible. One of the most salient aquatic features of the Lisbon Bottom Unit is a newly created 2-mile-long free-flowing chute, or side channel (Fig. 1). This chute began forming as a levee breech scour hole during the Great Flood of 1993. The chute continued to develop during the 1995 flood and finally cut through to a flowing side channel during the 1996 flood. Extensive erosion and bank sluffing continued during 1997 due to sustained high flows that occurred throughout most of the year. The chute has progressively become wider and deeper with a developing meander pattern and channel bars have begun to form. Lisbon Bottom also contains several seasonal and permanent wetlands and is subject to periodic flooding at high Missouri River stages. Eight studies have been completed or are ongoing to evaluate Missouri River fishes associated with various habitat components of Lisbon Bottom and adjacent Missouri River reaches (Table 1). Several are part of much larger investigations to evaluate fish use of flood-created habitat features, basinwide fish assessment, and endangered or candidate species concerns. At the Lisbon Bottom Unit or in the Missouri River adjacent to the unit 54 fish species were collected (Table 2). Eight of these species have either a protected status under State or Federal laws or biologists consider them to potentially qualify for protected status. The status of the following fish is listed in Table 2: pallid sturgeon x shovelnose sturgeon hybrid, paddlefish, northern pike, sturgeon chub, sicklefin chub, ghost shiner, western silvery minnow, plains minnow, and blue sucker. Equally important to note are fish species that were not collected. The flathead chub, currently listed as State endangered and proposed for Federal listing, were not collected in any of the studies. Common fish species, collected in all seven sampling studies, included gizzard shad, common carp, river carpsucker, and freshwater drum. Paddlefish, skipjack herring, silver carp, white sucker, redfin shiner, western silvery minnow, bullhead minnow, and black bullhead were each collected in only one of the seven studies. Pflieger (1971) developed a guild system for the fishes of Missouri based on distribution patterns and centers of abundance. Fish were assigned to one of four primary faunal groups: Ozark, Big River, Lowland, and Prairie. Two secondary groups (Ozark-prairie and Ozark-lowland) were defined for species equally abundant and distributed in two of the primary areas. Two Ozark-prairie species, shorthead redhorse and white sucker, were collected on or near the Lisbon Bottom Unit. Big River species are found primarily in the Missouri and Mississippi Rivers. The environmental factors controlling fish distribution in these rivers appear to be substrate, current velocity, and turbidity. On or near the Lisbon Bottom Unit 18 Big River species were collected (Table 2). Lowland species are intolerant of siltation and high turbidity. They inhabit standing or slow-moving water with sand, fine gravel, and organic debris substrates. Two Lowland species, bullhead minnow and mosquitofish, were collected in connected scours on the Lisbon Bottom Unit. Prairie species have broader ecological tolerances than the Ozark and Lowland species. They are largely absent in high gradient streams and cool, clear waters. Prairie species make up a significant proportion of Missouri and Mississippi River fishes. Seven Prairie species were collected on or near the Lisbon Bottom Unit (Table 2). The last group, Wide-ranging, was defined as the species more widespread than the other faunal groups with broader environmental tolerances. Most Wide-ranging species occur at least occasionally in all sections of the state. Nineteen Wide-ranging species were collected on or near the Lisbon Bottom Unit (Table 2). Kubisiak (1997) found that isolated scours in the Lower Missouri River were dominated by Wide-ranging species. Connected scours also held Wideranging species but they contained Prairie species and were dominated by Big River species. Faunal group diversity and species richness were compared between isolated (Study l) and connected (Studies 4, 5, 7, and 8) scours of the Lisbon Bottom Unit. Species richness was similar with 22 species collected in isolated scours and an average of 24.8 species collected in connected scours. Isolated scour fish catches were dominated by Wide-ranging fish (59%) with 14% Big River fishes and 14% Prairie fishes. Connected scours had a larger percentage of Big River fish (32%) and fewer Wide-ranging (36%) and Prairie (13%) species than the isolated scours. In the combined studies, Wide-ranging fish dominated the connected scours. A similar comparison was made of fish from chute habitats and the Missouri River. Chute habitats include the Lisbon Bottom Chute, the chute between the right bank and island located at river mile 219, and a shallow channel running between a large sandbar complex and the channel border adjacent to Lisbon Bottom. Species richness in the chutes (35 species) was greater than that of the adjacent river (23 species). Big River species (40%) dominated the chute samples, followed by Wide-ranging at 31% Cand Prairie Cut 14%. The river samples contained equal numbers of Wide-ranging species (35%) and Big River species (35%) with 17% Prairie species. Differences in fish guild diversity and species richness may be due to numerous factors including sampling effort and sampling season. River samples were collected only in Study 3 in October; chute samples were collected in July, August, and October. Fish may have been using the chute in July and August to spawn, feed, or escape high river levels. The Lisbon Bottom Chute is a truly unique feature of the Lower Missouri River. It is the first naturally created side channel to develop since the U.S. Army Corps of Engineers tamed the river. The Corps eliminated 89% of the islands in the Missouri River between 1879 and 1954 (Funk and Robinson 1974). The chutes between the islands and the shore were shallower with less current than the main channel. These areas provided diversity to the Missouri River fish habitat, serving as nursery and feeding areas. The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge will continue to be studied in an effort to understand the complex role these areas play in river systems.

Missouri↗
USGS1999

Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The 2,300-acre Lisbon Bottom Unit, located in central Missouri, became part of the Big Muddy National Fish and Wildlife Refuge (NFWR) after the Great Flood of 1993 devastated the Unit's farmland and network of levees. As a result, interdisciplinary studies were initiated through collaboration among various researches, universities, and State and Federal conservation agencies to investigate the short-term effects of the flood and to expand information about the Missouri River and flood-plain systems. The studies included in these chapters investigate diverse aspects of Lisbon Bottom Unit's physical setting and biota and provide baseline information that managers can use to assess restoration efforts on Lisbon Bottom and other units of the Big Muddy NFWR.

Missouri↗
USGS2001

Toxicity and bioavailability of metals in the Missouri River adjacent to a lead refinery

This study is an evaluation of the potential environmental impacts of contaminated groundwater from the ASARCO metals refining facility adjacent to the Missouri River in Omaha, Nebraska. Surface waters, sediments, and sediment pore waters were collected from the Burt-Izard drain, which transects the facility, and from the Missouri River adjacent to the facility. Groundwater was also collected from the facility. Waters and sediments were analyzed for inorganic contaminants, and the toxicity of the waters was evaluated with the Ceriodaphnia dubia 7-day test. Concentrations of several elemental contaminants were highly elevated in the groundwater, but not in river sediment pore waters. Lead concentrations were moderately elevated in whole sediment at one site, but lead concentrations in pore waters were low due to apparent sequestration by acid-volatile sulfides. The groundwater sample was highly toxic to C. dubia , causing 100% mortality. Even at the lowest groundwater concentration tested (6.25%) C. dubia survival was reduced; however, at that concentration, reproduction was not significantly different from upstream porewater reference samples. Sediment pore waters were not toxic, except reproduction in pore water collected from one downstream site was somewhat reduced. The decrease in reproduction could not be attributed to measured elemental contaminants.

Nebraska↗
USGS2001

Relations among geology, physiography, land use, and stream habitat conditions in the Buffalo and Current River systems, Missouri and Arkansas

This study investigated links between drainage-basin characteristics and stream habitat conditions in the Buffalo National River, Arkansas and the Ozark National Scenic Riverways, Missouri. It was designed as an associative study - the two parks were divided into their principle tributary drainage basins and then basin-scale and stream-habitat data sets were gathered and compared between them. Analyses explored the relative influence of different drainage-basin characteristics on stream habitat conditions. They also investigated whether a relation between land use and stream characteristics could be detected after accounting for geologic and physiographic differences among drainage basins. Data were collected for three spatial scales: tributary drainage basins, tributary stream reaches, and main-stem river segments of the Current and Buffalo Rivers. Tributary drainage-basin characteristics were inventoried using a Geographic Information System (GIS) and included aspects of drainage-basin physiography, geology, and land use. Reach-scale habitat surveys measured channel longitudinal and cross-sectional geometry, substrate particle size and embeddedness, and indicators of channel stability. Segment-scale aerial-photo based inventories measured gravel-bar area, an indicator of coarse sediment load, along main-stem rivers. Relations within and among data sets from each spatial scale were investigated using correlation analysis and multiple linear regression. Study basins encompassed physiographically distinct regions of the Ozarks. The Buffalo River system drains parts of the sandstone-dominated Boston Mountains and of the carbonate-dominated Springfield and Salem Plateaus. The Current River system is within the Salem Plateau. Analyses of drainage-basin variables highlighted the importance of these physiographic differences and demonstrated links among geology, physiography, and land-use patterns. Buffalo River tributaries have greater relief, steeper slopes, and more streamside bluffs than the Current River tributaries. Land use patterns in both river systems correlate with physiography - cleared land area is negatively associated with drainage-basin average slope. Both river systems are dominantly forested (0-35 per-cent cleared land), however, the potential for landscape disturbance may be greater in the Buffalo River system where a larger proportion of cleared land occurs on steep slopes (>15 degrees). When all drainage basins are grouped together, reach-scale channel characteristics show the strongest relations with drainage-basin physiography. Bankfull channel geometry and residual pool dimensions are positively correlated with drainage area and topographic relief variables. After accounting for differences in drainage area, channel dimensions in Buffalo River tributaries tend to be larger than in Current River tributaries. This trend is consistent with the flashy runoff and large storm flows that can be generated in rugged, sandstone-dominate terrain. Substrate particle size is also most strongly associated with physiography; particle size is positively correlated with topographic relief variables. When tributaries are subset by river system, relations with geology and land use variables become apparent. Buffalo River tributaries with larger proportions of carbonate bedrock and cleared land area have shallower channels, better-sorted, gravel-rich substrate, and more eroding banks than those with little cleared land and abundant sandstone bedrock. Gravel-bar area on the Buffalo River main stem was also larger within 1-km of carbonate-rich tributary junctions. Because geology and cleared land are themselves correlated, relations with anthropogenic and natural factors could often not be separated. Channel characteristics in the Current River system show stronger associations with physiography than with land use. Channels are shallower and have finer substrates in the less rugged, karst-rich, western basins than in the

Arkansas, Missouri↗
USGS2002

Managing for biodiversity in young Douglas-fir forests of western Oregon

This project addressed potential contributions of forest thinning to enhancing biodiversity and accelerating development of old-growth characteristics in relatively young Douglas-fir forests typical of those managed according to the Northwest Forest Plan. Studies focused primarily on 32 paired unthinned and thinned stands and 20 associated old-growth stands in the Coast Range and Cascade mountains of western Oregon. Data were collected on vascular plants in most stands surveyed, and on epiphytic lichens and bryophytes, moths, and birds in subsets of these stands. Studies assessed whether or not (1) communities of organisms differed among stand types, (2) communities in thinned stands were more similar to those in old-growth stands than were those in unthinned stands, (3) species diversity or abundance was related to specific stand features, and (4) these specific stand features were shared across taxa. Results indicated that communities differed among stand types, and that communities in thinned stands were not necessarily more similar to old-growth communities than were those in unthinned stands. Variation in stand conditions appeared to enhance biodiversity, and hardwood trees and shrubs were important for many species. These and other results form the basis for general thinning guidelines, which are presented here, and will guide future research.

Biological Science Report↗
USGS2003

Physical stream habitat dynamics in Lower Bear Creek, northern Arkansas

We evaluated the roles of geomorphic and hydrologic dynamics in determining physical stream habitat in Bear Creek, a stream with a 239 km2 drainage basin in the Ozark Plateaus (Ozarks) in northern Arkansas. During a relatively wet 12-month monitoring period, the geomorphology of Bear Creek was altered by a series of floods, including at least four floods with peak discharges exceeding a 1-year recurrence interval and another flood with an estimated 2- to 4-year recurrence interval. These floods resulted in a net erosion of sediment from the study reach at Crane Bottom at rates far in excess of other sites previously studied in the Ozarks. The riffle-pool framework of the study reach at Crane Bottom was not substantially altered by these floods, but volumes of habitat in riffles and pools changed. The 2- to 4-year flood scoured gravel from pools and deposited it in riffles, increasing the diversity of available stream habitat. In contract, the smaller floods eroded gravel from the riffles and deposited it in pools, possibly flushing fine sediment from the substrate but also decreasing habitat diversity. Channel geometry measured at the beginning of the study was use to develop a two-dimensional, finite-element hydraulic model at assess how habitat varies with hydrologic dynamics. Distributions of depth and velocity simulated over the range of discharges observed during the study (0.1 to 556 cubic meters per second, cms) were classified into habitat units based on limiting depths and Froude number criteria. The results indicate that the areas of habitats are especially sensitive to change to low to medium flows. Races (areas of swift, relatively deep water downstream from riffles) disappear completely at the lowest flows, and riffles (areas of swift, relatively shallow water) contract substantially in area. Pools also contract in area during low flow, but deep scours associated with bedrock outcrops sustain some pool area even at the lowest modeled flows. Modeled boundary shear stresses were used to evaluate which flows are responsible for the most mobilization of the bed, and therefore, habitat maintenance. Evaluation of the magnitude and frequency of bed-sediment entrainment shows that most of the habitat maintenance results from flows that occur on average about 4 to 7 days a year. Our analysis documents the geomorphic and hydrologic dynamics that form and maintain habitats in a warmwater stream in the Ozarks. The range of flows that occurs on this stream can be partitioned into those that sustain habitat by providing the combinations of depth and velocity that stream organisms live with most of the time, and those flows that surpass sediment entrainment thresholds, alter stream geomorphology, and therefore maintain habitat. The quantitative relations show sensitivity of habitats to flow variation, but do not address how flow may vary in the future, or the extent to which stream geomorphology may be affected by variations in sediment supply.

Arkansas↗
USGS1997

A system for monitoring impact of Denali National Park road traffic on wildlife

The Denali National Park and Preserve (DENA) is a 6.03 million acre reserve lying between Anchorage and Fairbanks, Alaska. The park was established in 1917 as a wildlife refuge, and is managed to maintain the wilderness character. With the highest mountain in North America, Mt. McKinley, and the easy availability of wildlife for viewing, the park is Alaska's most favored destination point. From 1972 through 1984, visitation grew from 88, 615 to 394, 426 visitor days per year (GMP, 1986), and then increased by 50,000 per year to 596,000 visitors in 1988. This demand for motorized access to the park, especially along the 92.5 mile-long park road, has resulted in controversy and claims of traffic disturbance to wildlife [(letter from Superintendent, DENA July 13, 1988) (Anchorage Daily News, May 14, 1995; May 26, 1995; February 5, 1996; June 18, 1996) Leo (1987); Lee Rue (1996)].

Biological Science Report↗
USGS1998

Vulnerability of coastal wetlands in the Southeastern United States: climate change research results, 1992-97

As part of the USGCRP research framework on coastal lands and ecosystems, the Biological Resources Division of the U.S. Geological Survey (National Wetlands Research Center) entered into partnership with Rice University, Louisiana State University, Duke University, Clemson University, University of Southwestern Louisiana, University of Georgia, and the Virginia Institute of Marine Studies (University of Virginia ) to (1) document the current state vulnerability of coastal ecosystems including an assessment of past changes in land cover, (2) develop an understanding of the processes which underlie these changes, and (3) predict the extent of future alterations to these habitats and the consequences for the sustainability of the resource and land base. This document summarized the initial findings of our collaborative efforts. Overall, the studies exemplify an integrated approach addressing questions at the species, community, and landscape levels of organization and focusing on factors related to hydroperiod, sea-level rise, disturbance events, and coastal marsh submergence.

Biological Science Report↗
USGS1999

Hourly and daily variation of sediment redox potential in tidal wetland sediments

Variation of electrochemical oxidation-reduction (redox) potential was examined in surface salt march sediments under conditions of flooding and tidal simulation in mesocosms and field sites. Time series were generated of redox potential measured in sediment profiles at 2-10 cm depth using combination Pt-Ag/AgCl (ORP) electrodes. Redox potential data were acquired at rapid rates (1-55 samples/h) over extended periods (3-104 days) along with similar times series of temperature (water, air, soil) and pH. It was found that redox potential vaired as a result of water level changes and was unrelated to diurnal changes in temperature or pH, the latter of which changed by <0.5 units over the tide cycles. In closed, hydrostatic microcosms isolated from atmospheric oxygen, development of negative redox potentials proceeded rapidly (>370 mV redox potential decrease in under 48 hours). Attenuatoin of microbial activity by [gamma] y-radiation and toxic chemicals elimintated this response. In tidal salt marsh mesocosms where the sediment-plant assemblages were exposed to a simulated diurnal tide, redox potenial oscillations of 40-300 mV amplitude were recoded that has the same periodicity as the flood-drain cycle. Periodic redoc potential time series were observed repeatedly in sediments receiving tidal pulsing but not in those sediments exposed to static hydrological conditions. Data collected over 12 days from a coastal marsh site experiencing diurnal tides showed similar fluctuations in redox potential. Data from the experimentents indicated that (a) redox potential can be a dynamic, nonlinear variable in coastal and estuarine wetland sediments over hourly and daily scales, and the designs of biogeochemical experiments should reflect this, (b) redox potential can change rapidly and signigicantly in coastal wetland sediments in response of flooding and draining, (c) microbial community processes are primarily determinants of the time course of redox potential in wetland sediments, and elimination of inhibition of microbial activity (e.g. by pollutants) can significantly alter that behavior, and (d) fast redox potential dynamics appear to be characteristic of sediments that experience changes in hydrology. The rapid redox potential changes observed in these systems indicated dynamic metabolic and biogeochemical conditions in the field, and confirmed that hourly and daily redox potential variations should be resolved in studies of sediment functioning.

Biological Science Report↗
USGS1995

Evaluations of duck habitat and estimation of duck population sizes with a remote-sensing-based system

During 1987-90, we used high-altitude photography, aerial videography, counts, and models to estimate sizes of breeding populations of dabbling ducks (Anatinae) and duck production and to identify duck habitat on U.S. Fish and Wildlife Service land and easements and on private land in the prairie pothole region of the United States. The study area contained about 3.1 million wetland basins (28,490 km2). Wetland area (ha per km2) was highest on service-owned land; wetland-basin density was greatest on service easements. Temporary and seasonal wetlands were underrepresented and lakes were overrepresented on service-owned land. Seventy-eight percent of all basins were less than 0.41 ha. Cropland dominated private land. Pond density decreased from 4.4/km2 in 1987 to 3.4/km2 in 1990 and pond area, from 7.2 ha/km2 to 2.7 ha/km2. The density of the blue-winged teal was greatest (3.4 pairs/km2) and was followed in magnitude by those of the mallard (2.1 pairs/km2), the gadwall (1.8 pairs/km2), the northern pintail (0.8 pairs/km2), and the redhead (0.8 pairs/km2). Duck density was consistently highest on service-owned land. The decline of breeding-population sizes in 1987-90 closely corresponded to losses of pond numbers and pond area. The density of breeding pairs per pond was inversely related to pond density, suggesting that breeding ducks tended to concentrate on the remaining ponds as drought intensified. The production of recruits followed the same pattern as breeding-population sizes. We estimated that 2.5% of the ducklings hatched on service-owned land, which was 1.3% of the study area; 19.6% hatched on service easements, which were 14.2% of the study area; and 77.9% hatched on private land, which was 84.6% of the study area. Various sources of bias and sampling error and improvements to the system are discussed.

Biological Science Report↗
USGS2001

A national pilot study of mercury contamination of aquatic ecosystems along multiple gradients" Bioaccumulation in fish

Water, sediment, and fish were sampled in the summer and fall of 1998 at 106 sites from 20 U.S. watershed basins to examine relations of mercury (Hg) and methylmercury (MeHg) in aquatic ecosystems. Bioaccumulation of Hg in fish from these basins was evaluated in relation to species, Hg and MeHg in surficial sediment and water, and watershed characteristics. Bioaccumulation was strongly (positively) correlated with MeHg in water (r = 0.63, p < 0.001) but only moderately with the MeHg in sediment (r = 0.33, p < 0.001) or total Hg in water (r = 0.28, p < 0.01). Of the other significantly measured parameters, pH, DOC, sulfate, sediment LOI, and the percent wetlands of each basin were also significantly correlated with Hg bioaccumulation in fish. The best model for predicting Hg bioaccumulation included Me Hg in water, PH of the water, % wetlands in the basin, and the AVS content of the sediment. These four variables accounted for 45% of the variability of the fish fillet Hg concentration normalized (divided) by total length; however, the majority was described by MeHg in water. A MeHg water concentration 0.12 ng/L was on average, associated with a fish fillet Hg concentration of 0.3 mg/kg wet weight for an age-3 fish when all species were considered. For age-3 largemouth bass, a MeHg water concentration of 0.058 ng/L was associated with the 0.3 mg/kg fillet concentration. Based on rankings for Hg in sediment, water, and fish, sampling sites from the following five study basins had the greatest Hg contamination: Nevada Basin and Range, South Florida Basin, Sacramento River Basin (California), Santee River Basin and Caostal Drainages (South Carolina), and the Long Island and New Jersey Coastal Drainags. A sampling and analysis strategy based on this pilot study is planned for all USGS/NAWQA study units over the next decade.

Biological Science Report↗
USGS2018

Community for Data Integration 2017 annual report

The Community for Data Integration (CDI) is a group that helps members grow their expertise on all aspects of working with scientific data. The CDI’s activities advance data and information integration capabilities in the U.S. Geological Survey and in the wider Earth and biological sciences. This annual report describes the presentations, activities, collaboration areas, workshop, and other CDI-sponsored events in fiscal year 2017. The report also describes the objectives of the 11 CDI-funded projects in fiscal year 2017. The report shows how the CDI activities fulfill the strategic objective of the U.S. Geological Survey’s Core Science Systems Mission Area to develop a workplace model for interdisciplinary science.

Open-File Report↗
USGS1995

Report from the banding lab

Mr. Tautin reported on the seemingly everchanging structure of biological science units within the Interior Department. Current Congressional proposals would either change the name of the Bird Banding Lab's parent agency or make it part of the Geological Survey. The current Congress has not looked favorably on science budgets within the Interior Department, and the Banding Lab's budget is being squeezed ever tighter.

North American Bird Bander↗