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The Colorado Plateau: cultural, biological, and physical research

Stretching from the four corners of Arizona, New Mexico, Colorado, and Utah, the Colorado Plateau is a natural laboratory for a wide range of studies. This volume presents 23 original articles drawn from more than 100 research projects presented at the Sixth Biennial Conference of Research on the Colorado Plateau. This scientific gathering revolved around research, inventory, and monitoring of lands in the region. The book's contents cover management techniques for cultural, biological, and physical resources, representing collaborative efforts among federal, university, and private sector scientists and land managers. Chapters on cultural concerns cover benchmarks of modern southwestern anthropological knowledge, models of past human activity and impact of modern visitation at newly established national monuments, challenges in implementing the 1964 Wilderness Act, and opportunities for increased federal research on Native American lands. The section on biological resources comprises sixteen chapters, with coverage that ranges from mammalian biogeography to responses of elk at the urban-wildland interface. Additional biological studies include the effects of fire and grazing on vegetation; research on bald eagles at Grand Canyon and tracking wild turkeys using radio collars; and management of palentological resources. Two final chapters on physical resources consider a proposed rerouting of the Rio de Flag River in urban Flagstaff, Arizona, and an examination of past climate patterns over the Plateau, using stream flow records and tree ring data. In light of similarities in habitat and climate across the Colorado Plateau, techniques useful to particular management units have been found to be applicable in many locations. This volume highlights an abundance of research that will prove useful for all of those working in the region, as well as for others seeking comparative studies that integrate research into land management actions.

Utah;Colorado;Arizona;New Mexico

Physical modeling of river spanning rock structures: Evaluating interstitial flow, local hydraulics, downstream scour development, and structure stability

Rock weir and ramp structures uniquely serve a necessary role in river management: to meet water deliveries in an ecologically sound manner. Uses include functioning as low head diversion dams, permitting fish passage, creating habitat diversity, and stabilizing stream banks and profiles. Existing information on design and performance of in-stream rock structures does not provide the guidance necessary to implement repeatable and sustainable construction and retrofit techniques. As widespread use of rock structures increases, the need for reliable design methods with a broad range of applicability at individual sites grows as well. Rigorous laboratory testing programs were implemented at the U.S. Bureau of Reclamation (Reclamation) and at Colorado State University (CSU) as part of a multifaceted research project focused on expanding the current knowledge base and developing design methods to improve the success rate of river spanning rock structures in meeting project goals. Physical modeling at Reclamation is being used to measure, predict, and reduce interstitial flow through rock ramps. CSU is using physical testing to quantify and predict scour development downstream of rock weirs and its impact on the stability of rock structures. ?? 2009 ASCE.

Conference Paper

Robotic environmental DNA bio-surveillance of freshwater health

Autonomous water sampling technologies may help to overcome the human resource challenges of monitoring biological threats to rivers over long time periods and large geographic areas. The Monterey Bay Aquarium Research Institute has pioneered a robotic Environmental Sample Processor (ESP) that overcomes some of the constraints associated with traditional sampling since it can automate water sample filtration and preservation of the captured material or homogenize it for immediate analyses in situ. The ESP was originally developed for marine environment applications. Here we evaluated whether the ESP can provide reliable, timely information on environmental (e)DNA detections of human and fish pathogens and introduced fishes at U.S. Geological Survey streamgage sites in freshwater rivers. We compared eDNA collected via ESP at high frequency (e.g., every 3 h) with manual eDNA collections collected at lower frequency (e.g., weekly). We found that water samples filtered and preserved by ESPs successfully detected the DNA of human pathogens, fish pathogens and introduced fishes. Both ESP and manually collected samples provided similar information about target DNA presence. We suggest that the greatest current benefit of the ESP is the cost savings of high frequency, bio-surveillance at remote or hard to access sites. The full potential of robotic technologies like the ESP will be realized when they can more easily execute in situ analyses of water samples and rapidly transmit results to decision-makers.

Idaho, Montana, Wyoming

Changes in backwater plant communities from 1975 to 1995 in Navigation Pool 8, Upper Mississippi River

Water elevation in the Upper Mississippi River (UMR) is highly regulated by an extensive system of locks and dams. Completion of this system in the 1930s created productive, biologically diverse backwater habitats. The status of plant communities in these backwater areas may now be threatened by several factors, including sediment accumulation, recreational use, and navigation traffic. Aerial photography, taken in 1975 and from 1991 to 1995, was used to describe vegetation changes occurring in four UMR backwater areas of Navigation Pool 8. The objectives were to determine (1) if changes occurring in these areas are consistent with hydrarch succession, (2) if the diversity of their plant communities has declined since 1975, and (3) how a large flood event that occurred in 1993 affected the composition and diversity of plant communities in these areas. Three general cover classes were recognized, representing an aquatic to terrestrial gradient. Coverages of specific vegetation types were estimated and evaluated using two indices of community diversity (vegetation richness and the Shannon diversity index). Though some vegetation changes were consistent with expected successional patterns (e.g. increased terrestrialization), other changes were not (e.g. loss of marsh vegetation). Diversity indices and coverages of most aquatic macrophytes declined from 1975 to 1991/1992 but then increased following the 1993 flood. The results suggest that disturbance–diversity concepts, including the flood pulse model, are applicable to the vegetation dynamics of these systems.

Mississippi River, Navigation Pool 8

A Regional Approach to Wildlife Monitoring Related to Energy Exploration and Development in Colorado

The U.S. Bureau of Land Management (BLM) is currently developing a National Monitoring Strategy that will guide efforts to create an efficient and effective process for monitoring land health by BLM. To inform the ongoing development of the national strategy, BLM selected two States (Colorado, Alaska) to serve as focal areas on which to base a flexible framework for developing monitoring programs that evaluate wildlife responses to energy development. We developed a three-phase monitoring plan to serve as a template and applied it to the design of a monitoring program for the Colorado focal area (White River and Glenwood Springs Field Offices of the BLM). Phase I is a synthesis and assessment of current conditions that capitalizes on existing but under used data sources. A key component is the use of existing habitat and landscape models to evaluate the cumulative effects of surface disturbance. Phase II is the data collection process that uses information provided in Phase I to refine management objectives and provide a linkage to management decisions. The linkage is established through targeted monitoring, adaptive management, and research. Phase III establishes priorities and strategies for regional and national monitoring, and facilitates coordination among other land management agencies and organizations. The three phases are designed to be flexible and complementary. The monitoring plan guides an iterative process that is performed incrementally, beginning with the highest-priority species and management issues, while building on lessons learned and coordination among administrative levels. The activities associated with each phase can be repeated or updated as new information, data, or tools become available. This allows the development of a monitoring program that expands gradually and allows for rapid implementation. A demonstration application of the three-phase monitoring plan was conducted for a study area encompassing five BLM field offices in Colorado: White River, Glenwood Springs, Kremmling, Grand Junction, and Little Snake. The overall study area was selected to encompass the primary distribution of sagebrush and greater sage-grouse (Centrocercus urophasianus) in Colorado and to provide a larger context for evaluating priority management issues of the White River and Glenwood Springs Field Offices. Within the study area, we selected an additional scale of analysis: the Roan Plateau, an area of increased energy development. We focused our demonstration project on the primary objectives identified by the BLM and other stakeholders: (1) How do we evaluate the cumulative effects of energy development and mitigation activities on species of management interest or concern? (2) How can cumulative effects, including direct and indirect effects, be quantified relative to natural variation? (3) How can we implement compliance and effectiveness monitoring to determine whether lease stipulations are met and restoration/mitigation goals are achieved? We targeted greater sage-grouse because this species was identified as a monitoring priority for the White River Field Office. We also evaluated landscape-level indices to address fragmentation resulting from surface disturbance. The primary purpose of this exercise was to highlight the types of analyses and approaches that could be used to evaluate energy development in an application of the three-phase framework. We provide examples of Phase I products that can be used to guide the refinement of management objectives, development of adaptive management and research frameworks, and planning activities in Phase II. Finally, we report on the BLM's National Sage-Grouse Habitat Conservation Strategy as an example of Phase III activities. The development of an effective monitoring program is a daunting task, and will be difficult to implement by the BLM independently due to the current work load of staff. However, the scientific expertise and experience for developing cr

Open-File Report

Crop classification modelling using remote sensing and environmental data in the Greater Platte River Basin, USA

With an ever expanding population, potential climate variability and an increasing demand for agriculture-based alternative fuels, accurate agricultural land-cover classification for specific crops and their spatial distributions are becoming critical to researchers, policymakers, land managers and farmers. It is important to ensure the sustainability of these and other land uses and to quantify the net impacts that certain management practices have on the environment. Although other quality crop classification products are often available, temporal and spatial coverage gaps can create complications for certain regional or time-specific applications. Our goal was to develop a model capable of classifying major crops in the Greater Platte River Basin (GPRB) for the post-2000 era to supplement existing crop classification products. This study identifies annual spatial distributions and area totals of corn, soybeans, wheat and other crops across the GPRB from 2000 to 2009. We developed a regression tree classification model based on 2.5 million training data points derived from the National Agricultural Statistics Service (NASS) Cropland Data Layer (CDL) in relation to a variety of other relevant input environmental variables. The primary input variables included the weekly 250 m US Geological Survey Earth Observing System Moderate Resolution Imaging Spectroradiometer normalized differential vegetation index, average long-term growing season temperature, average long-term growing season precipitation and yearly start of growing season. An overall model accuracy rating of 78% was achieved for a test sample of roughly 215 000 independent points that were withheld from model training. Ten 250 m resolution annual crop classification maps were produced and evaluated for the GPRB region, one for each year from 2000 to 2009. In addition to the model accuracy assessment, our validation focused on spatial distribution and county-level crop area totals in comparison with the NASS CDL and county statistics from the US Department of Agriculture (USDA) Census of Agriculture. The results showed that our model produced crop classification maps that closely resembled the spatial distribution trends observed in the NASS CDL and exhibited a close linear agreement with county-by-county crop area totals from USDA census data ( R 2 = 0.90).

Greater Platte River Basin

Application of surface geophysical methods, with emphasis on magnetic resonance soundings, to characterize the hydrostratigraphy of the Brazos River alluvium aquifer, College Station, Texas, July 2006: A pilot study

The U.S. Geological Survey, in cooperation with the Texas Water Development Board, used surface geophysical methods at the Texas A&M University Brazos River Hydrologic Field Research Site near College Station, Texas, in a pilot study, to characterize the hydrostratigraphic properties of the Brazos River alluvium aquifer and determine the effectiveness of the methods to aid in generating an improved ground-water availability model. Three non-invasive surface geophysical methods were used to characterize the electrical stratigraphy and hydraulic properties and to interpret the hydrostratigraphy of the Brazos River alluvium aquifer. Two methods, time-domain electromagnetic (TDEM) soundings and two-dimensional direct-current (2D–DC) resistivity imaging, were used to define the lateral and vertical extent of the Ships clay, the alluvium of the Brazos River alluvium aquifer, and the underlying Yegua Formation. Magnetic resonance sounding (MRS), a recently developed geophysical method, was used to derive estimates of the hydrologic properties including percentage water content and hydraulic conductivity. Results from the geophysics study demonstrated the usefulness of combined TDEM, 2D–DC resistivity, and MRS methods to reduce the need for additional boreholes in areas with data gaps and to provide more accurate information for ground-water availability models. Stratigraphically, the principal finding of this study is the relation between electrical resistivity and the depth and thickness of the subsurface hydrostratigraphic units at the site. TDEM data defined a three-layer electrical stratigraphy corresponding to a conductor-resistor-conductor that represents the hydrostratigraphic units—the Ships clay, the alluvium of the Brazos River alluvium aquifer, and the Yegua Formation. Sharp electrical boundaries occur at about 4 to 6 and 20 to 22 meters below land surface based on the TDEM data and define the geometry of the more resistive Brazos River alluvium aquifer. Variations in resistivity in the alluvium aquifer range from 10 to more than 175 ohm-meters possibly are caused by lateral changes in grain size. Resistivity increases from east to west along a profile away from the Brazos River, which signifies an increase in grain size within the alluvium aquifer and therefore a more productive zone with more abundant water in the aquifer. MRS data can help delineate the subsurface hydrostratigraphy and identify the geometric boundaries of the hydrostratigraphic units by identifying changes in the free water content, transmissivity, and hydraulic conductivity. MRS data indicate that most productive zones of the alluvium aquifer occur between 12 and 25 meters below land surface in the western part of the study area where the hydraulic conductivity can be as high as 250 meters per day. Hydrostratigraphically, individual hydraulic conductivity values derived from MRS were consistent with those from aquifer tests conducted in 1996 in the study area. Average hydraulic conductivity values from the aquifer tests range from about 61 to 80 meters per day, whereas the MRS-derived hydraulic conductivity values range from about 27 to 97 meters per day. Interpreting an interpolated profile of the hydraulic conductivity values and individual values derived from MRS can help describe the hydrostratigraphic framework of an area and constrain ground-water models for better accuracy.

Texas

Evaluation of an acoustic fish deterrent system in shallow water application at the Emiquon Preserve, Lewistown, IL.

Expansion of non-native fish have caused ecological and economic damage and can negatively impact native fish populations. Current research on deterrent technologies for bighead Hypophthalmichthys nobilis and silver carp H. molitrix have primarily focused on reducing upstream movement in large river lock approaches. However, there is also interest in excluding carp from smaller-scale locations. A water control structure at Emiquon Preserve, Lewistown, Illinois, USA reconnected the Preserve’s wetland lakes to the Illinois River, and is a pinch point that site managers seek to deter immigration of non-native fishes without restricting native fish movement. One possible deterrent strategy that was evaluated within the water control structure in 2017 was the use of a 100 hp boat motor acoustic stimulus. Two underwater speakers were installed in each of two culverts to discourage fish movement though the water control structure. Fish passage was monitored using a series of passive integrated transponder (PIT) antennas in a confined study area. A combination of 176 fish consisting of seven different species (native and non-native) were implanted with PIT tags and relocated downstream of the water control structure. Over 2 days of periodic playback of the acoustic stimulus, 29% of tagged silver carp that were detected crossed though the active underwater speaker array. The acoustic treatment did not significantly reduce silver carp or native centrarchid passage through the culverts. However, numerous silver carp were observed jumping out of the acoustically active culvert at the onset of the stimulus. The acoustic stimulus, especially the frequencies to which silver carp are most sensitive to (< 2000 Hz), rapidly attenuated in the water control structure (water depth 0.55–0.38 m). Depth related attenuation observed in and around the water control structure may have reduced the efficacy of the acoustic fish deterrent system at this location.

Illinois

Application of the Precipitation-Runoff Modeling System (PRMS) to simulate the streamflows and water balance of the Red River Basin, 1980–2016

The Precipitation-Runoff Modeling System (PRMS) was used to develop and calibrate a streamflow and water balance model for the Red River Basin as part of the U.S. Geological Survey National Water Census, a research effort focused on developing innovative water accounting tools and conducting assessments of water use and availability at regional and national spatial scales. The PRMS is a deterministic model that simulates the effects of climate, land cover, and water use on watershed hydrology on the basis of physical processes and spatial attributes of the watershed. The model was used to estimate streamflow at daily and monthly temporal scales for the 1980–2016 period and to evaluate the impacts of natural and anthropogenic influences on streamflow and water budget components. Sixty-three percent of streamgages were calibrated successfully for the monthly time step and 43 percent of streamgages were successfully calibrated for the daily time step. Some of the challenges of calibrating streamgages included estimating low amounts of streamflow in dry areas of the basin and accurately representing watershed characteristics related to evapotranspiration in the basin, among other factors. The model estimated streamflow with some accuracy for 42 percent and 29 percent of the 73 streamgages used to evaluate the model at monthly and daily time steps, respectively. Relative to no-water-use conditions, water use increased streamflow volumes (that is, return flow from reservoir releases) the most on the main stem of the Red River, the North Fork of the Red River, and the Ouachita River. Water withdrawal decreased streamflow volumes most in the Red River near the outlet of the basin and in Caney Creek. Streamflow volumes on the North Fork of the Red River changed most as a result of water use. The Red River Basin PRMS model provided estimates of streamflow that were limited in their accuracy by (1) the availability of accurate water-use data; (2) the coarse resolution of spatial parameters (such as those for impervious area or plant canopy), which leads to the homogenization of physical features in small watersheds in the model domain; and (3) the accuracy of spatial patterns of precipitation distribution across the model domain. Improvements in the quality and quantity of available water-use data and finer resolution spatial parameter and climate data could lead to the development of better-informed models in the future that are capable of making more accurate estimates of streamflow, because they are more representative of physical and hydrologic conditions in the Red River Basin.

Arkansas, Louisiana, Texas, Oklahoma

Predictability of horizontal water vapor transport relative to precipitation: Enhancing situational awareness for forecasting western U.S. extreme precipitation and flooding

The western United States is vulnerable to socioeconomic disruption due to extreme winter precipitation and floods. Traditionally, forecasts of precipitation and river discharge provide the basis for preparations. Herein we show that earlier event awareness may be possible through use of horizontal water vapor transport (integrated vapor transport (IVT)) forecasts. Applying the potential predictability concept to the National Centers for Environmental Prediction global ensemble reforecasts, across 31 winters, IVT is found to be more predictable than precipitation. IVT ensemble forecasts with the smallest spreads (least forecast uncertainty) are associated with initiation states with anomalously high geopotential heights south of Alaska, a setup conducive for anticyclonic conditions and weak IVT into the western United States. IVT ensemble forecasts with the greatest spreads (most forecast uncertainty) have initiation states with anomalously low geopotential heights south of Alaska and correspond to atmospheric rivers. The greater IVT predictability could provide warnings of impending storminess with additional lead times for hydrometeorological applications.

Geophysical Research Letters

StreamStats in North Carolina: A water-resources Web application

A statewide StreamStats application for North Carolina was developed in cooperation with the North Carolina Department of Transportation following completion of a pilot application for the upper French Broad River basin in western North Carolina (Wagner and others, 2009). StreamStats for North Carolina, available at http://water.usgs.gov/osw/streamstats/north_carolina.html, is a Web-based Geographic Information System (GIS) application developed by the U.S. Geological Survey (USGS) in consultation with Environmental Systems Research Institute, Inc. (Esri) to provide access to an assortment of analytical tools that are useful for water-resources planning and management (Ries and others, 2008). The StreamStats application provides an accurate and consistent process that allows users to easily obtain streamflow statistics, basin characteristics, and descriptive information for USGS data-collection sites and user-selected ungaged sites. In the North Carolina application, users can compute 47 basin characteristics and peak-flow frequency statistics (Weaver and others, 2009; Robbins and Pope, 1996) for a delineated drainage basin. Selected streamflow statistics and basin characteristics for data-collection sites have been compiled from published reports and also are immediately accessible by querying individual sites from the web interface. Examples of basin characteristics that can be computed in StreamStats include drainage area, stream slope, mean annual precipitation, and percentage of forested area (Ries and others, 2008). Examples of streamflow statistics that were previously available only through published documents include peak-flow frequency, flow-duration, and precipitation data. These data are valuable for making decisions related to bridge design, floodplain delineation, water-supply permitting, and sustainable stream quality and ecology. The StreamStats application also allows users to identify stream reaches upstream and downstream from user-selected sites and obtain information for locations along streams where activities occur that may affect streamflow conditions. This functionality can be accessed through a map-based interface with the user’s Web browser, or individual functions can be requested remotely through Web services (Ries and others, 2008).

North Carolina

Primer for identifying cold-water refuges to protect and restore thermal diversity in riverine landscapes

In 2003, EPA issued Region 10 guidance for Pacific Northwest state and tribal temperature water quality standards. This document was the culmination of a multi-agency, multi-disciplinary effort to develop a temperature standard for the protection of salmon, steelhead, bull trout, and redband and Lahontan cutthroat trout (collectively termed coldwater salmonids). Since its release, the Oregon and Washington have adopted the temperature standard for their waters designated for protection of coldwater salmonids. One of the unique aspects of the temperature standard, which strived to integrate the physical nature of rivers and streams and the biological requirements of coldwater salmonids, is the requirement to protect and restore cold-water refuges. This requirement is incorporated into the temperature criterion for the protection of migration corridors in the Willamette, Columbia, and Snake rivers. The intent of this provision is the recognition that some coldwater salmonids migrate through waters during thermally stressful months of summer and most likely are able to do so by using features in the rivers that provide cold water spatially or temporally. The challenge is to ensure that these features are identified, protected, and restored in order for these waters to meet the temperature standard. This primer is intended to assist Region 10 states, tribes, and local watershed groups in meeting this goal and thereby further the protection and restoration of coldwater salmonids. It provides an up-to-date summary with easily referenced information and illustrations on the scientific advances and management applications of research on cold-water refuges and can be used as a "roadmap" for identifying cold-water refuges and learning more about processes that create thermal diversity in riverine landscapes. The specific objectives are to 1. define cold-water refuge in scientific and management contexts. 2. outline an approach for identifying cold-water refuges to address water quality standards. 3. classify and characterize the types and physical processes that create cold-water refuges. 4. review methods and tools for identifying cold-water refuges in small streams to large rivers. 5. describe ecological perspectives and on-the-ground approaches for protecting and restoring thermal diversity in rivers.

Oregon

A multidisciplinary framework to derive global river reach classifications at high spatial resolution

Projected climate and environmental change are expected to increase the pressure on global freshwater resources. To prepare for and cope with the related risks, stakeholders need to devise plans for sustainable management of river systems, which in turn requires the identification of management-appropriate operational units, such as groups of rivers that share similar environmental and biological characteristics. Ideally, these units are of a manageable size, and are biotically or abiotically distinguishable across a variety of river types. Here, we aim to address this need by presenting a new global river classification framework (GloRiC) to establish a common vocabulary and standardized approach to the development of globally comprehensive and integrated river classifications that can be tailored to different goals and requirements. We define the GloRiC conceptual framework based on five categories of variables: (1) hydrology; (2) physiography and climate; (3) fluvial geomorphology; (4) water chemistry; and (5) aquatic biology. We then apply the framework using hydro-environmental attributes provided by a seamless high-resolution river reach database to create initial instances of three sub-classifications (hydrologic, physio-climatic, and geomorphic) which we ultimately combine into 127 river reach types at the global scale. These supervised classifications utilize a mix of statistical analyses and expert interpretation to identify the classifier variables, the number of classes, and their thresholds. In addition, we also present an unsupervised, multivariable k-means statistical clustering of all river reaches into 30 groups. These first-of-their-kind global river reach classifications at high spatial resolution provide baseline information for a total of 35.9 million kilometers of rivers that have been assessed in this study, and are expected to be particularly useful in remote or data-poor river basins. The GloRiC framework and associated data are primarily designed for broad and rapid applicability in assessments that require stratified analyses of river ecosystem conditions at global and regional scales; smaller-scale applications could follow the same conceptual framework yet use more detailed data sources.

Environmental Research Letters

Potential flood events in the lower Missouri River basin over multiple centuries identified using tree-ring based multi-model streamflow reconstructions

The Missouri River basin (MRB), the largest river basin in the United States, presents major water management challenges due to its complex topology and extensive infrastructure designed to manage high annual flows. Severe hydroclimatic events, particularly floods in 1993, 2011, and 2019, have highlighted vulnerabilities, leading the U.S. Army Corps of Engineers to enhance flood risk assessments in 2023. This study focuses on the full MRB, using tree-ring based streamflow reconstructions to extend the Basin's historic streamflow perspective. We developed annual streamflow reconstructions for the Hermann, Missouri streamgage from water years 1360–1900 using K-nearest neighbor and principal component regression methods. These reconstructions incorporate 183 tree-ring chronologies (1360–2020) and modeled natural streamflow (1901–‍2020). Reconstructions were evaluated for consistency using statistical measures and wavelet analysis. Both methods produced similar results, confirming their reliability in reconstructing multi-century streamflows. This novel methodology, guided by wavelet analysis, was developed to identify potential flood events in the lower Missouri River basin (LMRB), resulting in the identification of 172 potential flood events from water years 1360–2020, with 126 events common to the two versions of the MRB reconstructions. The reconstructed streamflow records showed an increase in the number of events until the late-18th- or mid-19th-century. These findings provide insights into evolving flood characteristics in the LMRB. The novel methodology developed in this study can be used to identify potential flood events from tree-ring based annual streamflow reconstructions and generally be applicable to other river basins.

Colorado, Iowa, Kansas, Missouri, Nebraska, Wyomin

Tracking solutes and water from subsurface drip irrigation application of coalbed methane-produced waters, Powder River Basin, Wyoming

One method to beneficially use water produced from coalbed methane (CBM) extraction is subsurface drip irrigation (SDI) of croplands. In SDI systems, treated CBM water (injectate) is supplied to the soil at depth, with the purpose of preventing the buildup of detrimental salts near the surface. The technology is expanding within the Powder River Basin, but little research has been published on its environmental impacts. This article reports on initial results from tracking water and solutes from the injected CBM-produced waters at an SDI system in Johnson County, Wyoming. In the first year of SDI operation, soil moisture significantly increased in the SDI areas, but well water levels increased only modestly, suggesting that most of the water added was stored in the vadose zone or lost to evapotranspiration. The injectate has lower concentrations of most inorganic constituents relative to ambient groundwater at the site but exhibits a high sodium adsorption ratio. Changes in groundwater chemistry during the same period of SDI operation were small; the increase in groundwater-specific conductance relative to pre-SDI conditions was observed in a single well. Conversely, groundwater samples collected beneath another SDI field showed decreased concentrations of several constituents since the SDI operation. Groundwater-specific conductance at the 12 other wells showed no significant changes. Major controls on and compositional variability of groundwater, surface water, and soil water chemistry are discussed in detail. Findings from this research provide an understanding of water and salt dynamics associated with SDI systems using CBM-produced water.

Wyoming

Metals fate and transport modelling in streams and watersheds: state of the science and USEPA workshop review

Metals pollution in surface waters from point and non-point sources (NPS) is a widespread problem in the United States and worldwide (Lofts et al. , 2007; USEPA, 2007). In the western United States, metals associated with acid mine drainage (AMD) from hardrock mines in mountainous areas impact aquatic ecosystems and human health (USEPA, 1997a; Caruso and Ward, 1998; Church et al. , 2007). Metals fate and transport modelling in streams and watersheds is sometimes needed for assessment and restoration of surface waters, including mining-impacted streams (Runkel and Kimball, 2002; Caruso, 2003; Velleux et al. , 2006). The Water Quality Analysis Simulation Program (WASP; Wool et al. , 2001), developed by the US Environmental Protection Agency (USEPA), is an example of a model used for such analyses. Other approaches exist and appropriate model selection depends on site characteristics, data availability and modelling objectives. However, there are a wide range of assumptions, input parameters, data requirements and gaps, and calibration and validation issues that must be addressed by model developers, users and decision makers. Despite substantial work on model development, their successful application has been more limited because they are not often used by decision makers for stream and watershed assessment and restoration. Bringing together scientists, model developers, users and decision makers should stimulate the development of appropriate models and improve the applicability of their results. To address these issues, the USEPA Office of Research and Development and Region 8 (Colorado, Montana, North Dakota, South Dakota, Utah and Wyoming) hosted a workshop in Denver, Colorado on February 13–14, 2007. The workshop brought together approximately 35 experts from government, academia and consulting to address the state of the art for modelling metals fate and transport, knowledge gaps and future directions in metals modelling. It focused on modelling metals in high-altitude streams, rivers and watersheds impacted by mine waste that are common in the western United States and require remediation. For example, there are over 100 000 abandoned or inactive mining sites across the United States, encompassing over 500 000 acres of land that may eventually require characterization and remediation, including the possible application of stream or watershed metals fate and transport modelling (USEPA, 1997a). This article provides a general overview of the state of the science on modelling metals fate and transport in streams and watersheds, including a review of presentations and discussions at the USEPA workshop. It builds on previous summaries of metals fate and transport models in aquatic systems, including USEPA (1997b, 2007), Allen (2002), Paquin et al. (2003), Nordstrom (2004) and Maest et al. (2005).

Colorado

Beyond annual streamflow reconstructions for the Upper Colorado River Basin: a paleo-water-balance approach

In this paper, we present a methodology to use annual tree-ring chronologies and a monthly water balance model to generate annual reconstructions of water balance variables (e.g., potential evapotrans- piration ( PET ), actual evapotranspiration ( AET ), snow water equivalent ( SWE ), soil moisture storage ( SMS ), and runoff ( R )). The method involves resampling monthly temperature and precipitation from the instrumental record directed by variability indicated by the paleoclimate record. The generated time series of monthly temperature and precipitation are subsequently used as inputs to a monthly water balance model. The methodology is applied to the Upper Colorado River Basin, and results indicate that the methodology reliably simulates water-year runoff, maximum snow water equivalent, and seasonal soil moisture storage for the instrumental period. As a final application, the methodology is used to produce time series of PET , AET , SWE , SMS , and R for the 1404–1905 period for the Upper Colorado River Basin.

Water Resources Research

Detection of environmental DNA of bigheaded carps in samples collected from selected locations in the St. Croix River and in the Mississippi River

The use of molecular methods, such as the detection of environmental deoxyribonucleic acid (eDNA), have become an increasingly popular tool in surveillance programs that monitor for the presence of invasive species in aquatic systems. One early application of these methods in aquatic systems was surveillance for DNA of Asian carps (specifically bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix) in water samples taken from the Chicago Area Waterway System. The ability to identify DNA of a species in an environmental sample presents a potentially powerful tool because these sensitive analyses can presumably detect the presence of DNA in water even when the species is not abundant or are difficult to catch or monitor with traditional gear. Prior to research presented in this report, an initial eDNA surveillance effort was completed in selected locations in the Upper Mississippi and St. Croix Rivers in 2011 after the capture of a bighead carp in the St. Croix River near Prescott, WI. Data presented in this report were developed to duplicate the 2011 monitoring results from the Upper Mississippi and St. Croix Rivers and to provide critical insight into the technique to inform future work in these locations. We specifically sought to understand the potential confounding effects of other pathways of eDNA movement (e.g., fish-eating birds, watercraft) on the variation in background DNA by collecting water samples from (1) sites within the St. Croix River and the upper Mississippi River where the DNA of silver carp was previously detected, (2) sites considered to be free of Asian carp, and (3) a site known to have a large population of Asian carp. We also sought to establish a baseline Asian carp eDNA signature to which future eDNA sampling efforts could be compared. All samples taken as part of this effort were processed using conventional polymerase chain reaction (PCR) according to procedures outlined in the U.S. Army Corps of Engineers Quality Assurance Project Plan with minor deviations designed to enhance the rigor of our data. Presence of DNA in PCR-positive samples was confirmed by Sanger sequencing (forward and reverse) and sequences were considered positive only if sequences (forward and reverse) of ≥150 base pairs had a match of ≥95% to those of published sequences for bighead carp or silver carp. The DNA of bighead carp and silver carp was not detected in environmental samples collected above and below St. Croix Falls Dam on the St. Croix River, above and below the Coon Rapids Dam and below Lock and Dam 1 on the Upper Mississippi River, and from two negative control lakes, Square Lake and Lake Riley. The DNA of silver carp was detected in environmental samples collected below Lock and Dam 19 at Keokuk, Iowa, a reach of the river with high silver carp abundance. The portion (68%) of environmental samples taken below Lock and Dam 19 that were determined to contain the DNA of silver carp was similar to that reported in the scientific literature for other abundant species. The DNA of bighead carp, however, was not detected in environmental samples collected below Lock and Dam 19, a reach of the river known to have bighead carp. Previous reported detections of the DNA of silver carp in samples collected in 2011 were not replicated in this study. Additional analyses are planned for the DNA extracted from the samples collected in 2012. Those analyses may provide additional information regarding the lack of amplification of bighead carp DNA and the lengths of the sequences of silver carp DNA present in samples taken below Lock and Dam 19. These additional analyses may help inform the use of eDNA monitoring in large, complex systems like the Mississippi River.

Minnesota, Wisconsin