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At least 181 records · Page 10Linked to original sources

Recent biogenic phosphorite: Concretions in mollusk kidneys

Phosphorite concretions have been detected in the kidneys of two widespread species of mollusks, Mercenaria mercenaria and Argopecten irradians , which have relatively high population densities. These concretions are the first documentation of the direct biogenic formation of phosphorite grains. The concretions are principally amorphous calcium phosphate, which upon being heated yields an x-ray diffraction pattern which is essentially that of chlorapatite. These concretions appear to be a normal formation of the excretory process of mollusks under reproductive, environmental, or pollutant-induced stress. Biogenic production of phosphorite concretions over long periods of time and diagenetic change from amorphous to crystalline structure, coupled with secondary enrichment, may account for the formation of some marine phosphorite deposits which are not easily explained by the chemical precipitation-replacement hypothesis.

Science↗

Marine magnetic gradiometer: A tool for the seismic interpreter

The marine magnetometer has been used since the early '50s as an ancillary tool on vessels conducting regional and local seismic surveys. Emphasis on marine magnetic data by academia has led to major discoveries about the structure of the earth's crust, such as the association of shallow, crustal magnetic anomalies to seafloor spreading and long-wavelength anomalies to deep crustal origin. The same enthusiasm has not occurred in industry primarily because greater emphasis has been placed on multichannel seismic reflection data.

Geophysics↗

Effects of predation by sea ducks on clam abundance in soft-bottom intertidal habitats

Recent studies have documented strong, top-down predation effects of sea ducks on mussel populations in rocky intertidal communities. However, the impact of these gregarious predators in soft-bottom communities has been largely unexplored. We evaluated effects of predation by wintering surf scoters Melanitta perspicillata and white-winged scoters M. fusca on clam populations in soft-bottom intertidal habitats of the Strait of Georgia, British Columbia. Specifically, we documented spatial and temporal variation in clam density (clams m &ndash;2 ), scoter diet composition, and the consequences of scoter predation on clam abundance. Of the 3 most numerous clams, Manila clams Venerupis philippinarum and varnish clams Nuttallia obscurata were the primary prey items of both scoter species, while clams of the genus Macoma were rarely consumed by scoters. Between scoter arrival in the fall and departure in the spring, Manila clams decreased in density at most sample sites, while varnish clam densities did not change or declined slightly. Our estimates of numbers of clams consumed by scoters accounted for most of the observed declines in combined abundance of Manila and varnish clams, despite the presence of numerous other vertebrate and invertebrate species known to consume clams. For Macoma spp., we detected an over-winter increase in density, presumably due to growth of clams too small to be retained by our sieve (<5 mm) during fall sampling, in addition to the lack of predation pressure by scoters. These results illustrate the strong predation potential of scoters in soft-bottom intertidal habitats, as well as their potentially important role in shaping community structure.

British Columbia↗

Stratigraphy of the Mesaverde Group in the central and eastern greater Green River basin, Wyoming, Colorado, and Utah

This paper establishes a stratigraphic framework for the Mesaverde Group, nearly 5,000 ft thick, in the central and eastern greater Green River basin based on data from measured outcrop sections and drill holes. Stratigraphic correlations are supported by ammonite zonation. No new stratigraphic names are introduced, and no nomenclature problems are discussed. Five long measured sections through the Mesaverde Group are described. The lower part of the Mesaverde Group, comprising the Rock Springs, Blair, Haystack Mountains, Allen Ridge, and Iles Formations, was deposited during a major eastward regression of the interior Cretaceous seaway of North America during the late Santonian and early Campanian. This regression was followed by regional uplift of the central Rocky Mountain area during the middle Campanian. The regional uplift was accompanied by widespread nondeposition and erosion, which, in turn, were followed by deposition of the Ericson and Pine Ridge Sandstones. The upper part of the Mesaverde Group, comprising the Almond and Williams Fork Formations, was deposited during a major westward transgression of the interior seaway in the early Maestrichtian. The major marine transgressions and regressions of the interior seaway were caused by eustatic changes of sea level, whereas intervening periods of nondeposition and erosion resulted from tectonism in the Sevier orogenic belt west of the study area. Formations of the Mesaverde Group are composed of sediments deposited in a landward-seaward progression of alluvial-plain, floodplain, coastal-plain, barrier-plain, tidal-flat, delta-plain, marine-shoreline, and marine-shelf and slope depositional environments. Each of these depositional environments is represented by specific lithofacies, sedimentary structures, and fossils, which are characteristic of depositional settings determined by water salinity, water depth, sedimentary and diagenetic processes, and the nature of sediment source terranes. The Mesaverde Group was deposited mainly along the western margins of the interior Cretaceous seaway as marine shorelines that trended north to northeast across the study area. Arcuate deltas, which formed at the mouths of major rivers along these shorelines, spread eastward onto shallow marine shelves. Embayed shoreline areas between the deltas were the sites of barrier-island and tidal-flat deposition. Alluvial-plain, flood-plain, and coastal-plain environments were present inland. The marine shorelines were tidally influenced and wave dominated, and shoreline deposits were mostly thick, linear sheets of quartzose sandstone. Deposition was largely controlled by the emergence or submergence of shoreline areas. Stillstands occurred close to local transgressions and regressions, depending on rates of sedimentation and subsidence.

Professional Paper↗

Assessing dorsal scute microchemistry for reconstruction of shortnose sturgeon life histories

The imperiled status of sturgeons worldwide places priority on the identification and protection of critical habitats. We assessed the micro-structural and micro-chemical scope for a novel calcified structure, dorsal scutes, to be used for reconstruction of past habitat use and group separation in shortnose sturgeon ( Acipenser brevirostrum ). Dorsal scutes contained a dual-layered structure composed of a thin multi-layered translucent zone lying dorsally above a thicker multi-layered zone. Banding in the thick multi-layered zone correlated strongly with pectoral fin spine annuli supporting the presence of chronological structuring that could contain a chemical record of past environmental exposure. Trace element profiles (Sr:Ca), collected using both wavelength dispersive electron microprobe analysis and laser ablation inductively coupled mass spectrometry, suggest scutes record elemental information useful for tracing transitions between freshwater and marine environments. Moreover, mirror-image like Sr:Ca profiles were observed across the dual-zone structuring of the scute that may indicate duplication of the microchemical profile in a single structure. Additional element:calcium ratios measured in natal regions of dorsal scutes (Ba:Ca, Mg:Ca) suggest the potential for further refinement of techniques for identification of river systems of natal origin. In combination, our results provide proof of concept that dorsal scutes possess the necessary properties to be used as structures for reconstructions of past habitat use in sturgeons. Importantly, scutes may be collected non-lethally and with less injury than current structures, like otoliths and fin spines, affording an opportunity for broader application of microchemical techniques.

Environmental Biology of Fishes↗

Geologic framework of the Alaskan Continental Terrace in the Chukchi and Beaufort seas

Seismic, magnetic and gravity data indicate that the Chukchi and Beaufort epicontinental seas off northern Alaska overlie three sedimentary basins, or provinces, separated by structural highs of regional extent. The basins trend west to northwest and become increasingly marine from south to north. The Chukchi-Beaufort continental margin is similar to those of Atlantic type. Hope basin, in the southern Chukchi Sea, overlies strongly deformed Paleozoic to mid-Cretaceous rocks of the Brooks Range orogen. The basin is inferred to contain nonmarine and marine clastic sedimentary rocks in a 1-km-thick Upper Cretaceous(?), a 1 1/2-km-thick Paleogene(?), and a 3/4-km-thick Neogene(?) sequence. A large anticline and many faults and smaller folds disrupt mainly the older sequences. The Hope basin sedimentary units onlap Herald arch, which trends northwest from Cape Lisburne in the central Chukchi Sea. At the Herald fault zone Brooks Range rocks in the arch are thrust east or northeast over Mississippian to Jurassic shelf carbonate and clastic rocks of the Arctic Alaska (Ellesmerian) basin and overlying Cretaceous flysch and molasse of the Colville geosyncline. These Mississippian to Cretaceous rocks underlie the northeast Chukchi Sea and reportedly are about 10 km thick near the Herald fault zone on the Lisburne Peninsula. The great Chukchi syntaxis in western Brooks Range rocks and structures is thought to result from intersection of the west-trending Brooks Range orogen by the northwest-trending Herald fault zone. The Mississippian to Jurassic shelf sequence thins northward, and onlaps the Barrow arch, which trends northwest from Point Barrow to 161° W.long., thence west-southwest to the Herald fault zone. The Colville geosyncline sequence oversteps both the pre-Cretaceous rocks and. the Barrow arch to form the North Chukchi basin west of 161°W. long. and the progradational Beaufort continental terrace east of it. The North Chukchi basin may contain about 6 km of section, probably Cretaceous and Tertiary and possibly deltaic. Diapirs (of Cretaceous shale?) pierce the gently northward-dipping strata of this basin, in places reaching the sea floor. Thick Tertiary marine and nonmarine clastic rocks of the Camden basin overlie the Cretaceous rocks of the North Slope and inner Beaufort continental terrace east of the Colville River delta. These rocks dip gently seaward west of 146°W. long. but are thrown into long, high-amplitude, east-northeast-striking folds to the east.

Alaska↗

Interim report on petroleum resource potential and geologic hazards in the outer continental shelf of the Gulf of Alaska Tertiary province

The potential for discovering large accumulations of petroleum on the Outer Continental Shelf of the Gulf of Alaska Tertiary Province cannot be evaluated with much confidence at present because of the inadequacies of the available offshore geological and geophysical data. The 22 deep test wells that have been drilled since 1954 have been unsuccessful because structure is complex and because suitable reservoir rocks have not been found in favorable structural positions. Although it is possible that the factors controlling accumulation of petroleum may improve offshore, regional stratigraphic and structural considerations together with the limited geophysical data suggest that this is not necessarily the case. Extrapolation of onshore geology together with the limited amount of marine geophysical data, indicate that the eastern Gulf of Alaska Outer Continental Shelf is geologically complex and consists of several areas with markedly differing structural styles and petroleum potential.

Alaska↗

Cretaceous sedimentation and tectonism in the southeastern Kaiparowits region, Utah

Upper Cretaceous strata in the southeastern Kaiparowits region of south-central Utah consist of approximately 3,500 feet of interfingering sandstone, mudstone, shale, and coal in the Dakota Formation (oldest), Tropic Shale, Straight Cliffs Formation, and Wahweap Formation (youngest). The formations consist of several depositional facies that can be recognized by characteristic lithologies bedding structures, and fossils; these are the alluvial plain, deltaic plain, lagoonal-paludal, barrier sandstone, and offshore marine facies. The distribution of facies clearly defines the paleogeography of the region during several cycles of marine transgression and regression. The nonmarine beds were deposited on a broad alluvial coastal plain that was bordered on the west and southwest by highlands and on the east and northeast by the Western Interior seaway. The marine beds were deposited whenever the seaway advanced into or across the region. The Dakota Formation and the lower part of the Tropic Shale were deposited in nonmarine and marine environments, while the shoreline advanced generally westward across the region. The middle and upper part of the Tropic Shale and the Tibbet Canyon and Smoky Hollow Members of the Straight Cliffs Formation were deposited in marine and nonmarine environments when the seaway had reached its greatest areal extent and began a gradual northeastward withdrawal. An unconformity at the top of the Smoky Hollow represents a period of erosion and possibly nondeposition before deposition of the John Henry Member of the Straight Cliffs. The John Henry Member grades from nonmarine in the southwest to predominantly marine in the northeast, and was deposited during two relatively minor cycles of transgression and regression. The Drip Tank Member at the top of the Straight Cliffs Formation is a widespread sandstone unit deposited mainly in fluvial environments. Some of the beds in the northeastern part of the region were probably deposited in marine waters during the final incursion of the seaway into the Kaiparowits region. The overlying Wahweap Formation was deposited in nonmarine environments. Slight but continued tectonism during Late Cretaceous time is indicated by lateral changes of facies and thickness variations that coincide at least partly with present structures. These criteria indicate that Laramide tectonism consisted of two phases. An early phase that lasted from about late Albian to late Campanian time included regional subsidence, basin downwarping, and movement on local folds and faults. A later phase that lasted from late Campanian to about late Paleocene time included regional uplift, monoclinal flexing, and probable new faulting, as well as continued basin downwarping and movement on local folds and probably on the older faults. The principal economic resource in the Kaiparowits region is bituminous or subbituminous coal in the john Henry Member. Because basin downwarping and movement on local folds occurred during deposition, the thicker and more continuous coal beds are in the ancestral synclines and tile deeper part of the structural basin. Presently indicated resources total 7.3 billion tons, but considerably larger quantities are probably present in the unexplored parts of the region. Several potential resources include ground water, titaniferous sandstone, and possibly oil and gas.

Utah↗

Variability in bacterial community structure during upwelling in the coastal ocean

Over the last 30 years, investigations at the community level of marine bacteria and phytoplankton populations suggest they are tightly coupled. However, traditional oceanographic approaches cannot assess whether associations between specific bacteria and phytoplankton exist. Recently, molecular based approaches have been implemented to characterize specific members of different marine bacterial communities. Yet, few molecular-based studies have examined coastal upwelling situations. This is important since upwelling systems provide a unique opportunity for analyzing the association between specific bacteria and specific phytoplankton in the ocean. It is widely believed that upwelling can lead to changes in phytoplankton populations (blooms). Thus, if specific associations exist, we would expect to observe changes in the bacterial population triggered by the bloom. In this paper, we present preliminary data from coastal waters off New Jersey that confirm a shift in bacterial communities during a 1995 upwelling event recorded at a long-term earth observatory (LEO-15) in the Mid-Atlantic Bight. Using PCR amplification and cloning, specific bacterial 16S ribosomal RNA sequences were found which were present in upwelling samples during a phytoplankton bloom, but were not detected in non-bloom samples (surface seawater, offshore sites or sediment samples) collected at the same time or in the same area. These findings are consistent with the notion of specific associations between bacteria and phytoplankton in the ocean. However, further examination of episodic events, such as coastal upwelling, are needed to confirm the existence of specific associations. Additionally, experiments need to be performed to elucidate the mechanisms leading to the specific linkages between a group of bacteria and a group of phytoplankton.

Hydrobiologia↗

Structural characterization of terrestrial microbial Mn oxides from Pinal Creek, AZ

The microbial catalysis of Mn(II) oxidation is believed to be a dominant source of abundant sorption- and redox-active Mn oxides in marine, freshwater, and subsurface aquatic environments. In spite of their importance, environmental oxides of known biogenic origin have generally not been characterized in detail from a structural perspective. Hyporheic zone Mn oxide grain coatings at Pinal Creek, Arizona, a metals-contaminated stream, have been identified as being dominantly microbial in origin and are well studied from bulk chemistry and contaminant hydrology perspectives. This site thus presents an excellent opportunity to study the structures of terrestrial microbial Mn oxides in detail. XRD and EXAFS measurements performed in this study indicate that the hydrated Pinal Creek Mn oxide grain coatings are layer-type Mn oxides with dominantly hexagonal or pseudo-hexagonal layer symmetry. XRD and TEM measurements suggest the oxides to be nanoparticulate plates with average dimensions on the order of 11 nm thick × 35 nm diameter, but with individual particles exhibiting thickness as small as a single layer and sheets as wide as 500 nm. The hydrated oxides exhibit a 10-Å basal-plane spacing and turbostratic disorder. EXAFS analyses suggest the oxides contain layer Mn(IV) site vacancy defects, and layer Mn(III) is inferred to be present, as deduced from Jahn–Teller distortion of the local structure. The physical geometry and structural details of the coatings suggest formation within microbial biofilms. The biogenic Mn oxides are stable with respect to transformation into thermodynamically more stable phases over a time scale of at least 5 months. The nanoparticulate layered structural motif, also observed in pure culture laboratory studies, appears to be characteristic of biogenic Mn oxides and may explain the common occurrence of this mineral habit in soils and sediments.

Geochimica et Cosmochimica Acta↗

Vitrinite reflectance data for Cretaceous marine shales and coals in the Bighorn Basin, north-central Wyoming and south-central Montana

The Bighorn Basin is a large Laramide (Late Cretaceous through Eocene) structural and sedimentary basin that encompasses about 10,400 square miles in north-central Wyoming and south-central Montana. The purpose of this report is to present new vitrinite reflectance data collected from Cretaceous marine shales and coals in the Bighorn Basin to better characterize the thermal maturity and petroleum potential of these rocks. Ninety-eight samples from Lower Cretaceous and lowermost Upper Cretaceous strata were collected from well cuttings from wells stored at the U.S. Geological Survey (USGS) Core Research Center in Lakewood, Colorado.

Wyoming;Montana↗

Marine magnetic survey and onshore gravity and magnetic survey, San Pablo Bay, northern California

Introduction From November 2011 to August 2015, the U.S. Geological Survey (USGS) collected more than 1,000 line-kilometers (length of lines surveyed in kilometers) of marine magnetic data on San Pablo Bay, 98 onshore gravity stations, and over 27 line-kilometers of ground magnetic data in northern California. Combined magnetic and gravity investigations were undertaken to study subsurface geologic structures as an aid in understanding the geologic framework and earthquake hazard potential in the San Francisco Bay Area. Furthermore, marine magnetic data illuminate local subsurface geologic features in the shallow crust beneath San Pablo Bay where geologic exposure is absent. Magnetic and gravity methods, which reflect contrasting physical properties of the subsurface, are ideal for studying San Pablo Bay. Exposed rock units surrounding San Pablo Bay consist mainly of Jurassic Coast Range ophiolite, Great Valley sequence, Franciscan Complex rocks, Miocene sedimentary rocks, and unconsolidated alluvium (Graymer and others, 2006). The contrasting magnetic and density properties of these rocks enable us to map their subsurface extent.

California↗

Fine-scale population genetic structure in Alaskan Pacific halibut ( Hippoglossus stenolepis )

Pacific halibut collected in the Aleutian Islands, Bering Sea and Gulf of Alaska were used to test the hypothesis of genetic panmixia for this species in Alaskan marine waters. Nine microsatellite loci and sequence data from the mitochondrial (mtDNA) control region were analyzed. Eighteen unique mtDNA haplotypes were found with no evidence of geographic population structure. Using nine microsatellite loci, significant heterogeneity was detected between Aleutian Island Pacific halibut and fish from the other two regions ( F ST range = 0.007&ndash;0.008). Significant F ST values represent the first genetic evidence of divergent groups of halibut in the central and western Aleutian Archipelago. No significant genetic differences were found between Pacific halibut in the Gulf of Alaska and the Bering Sea leading to questions about factors contributing to separation of Aleutian halibut. Previous studies have reported Aleutian oceanographic conditions at deep inter-island passes leading to ecological discontinuity and unique community structure east and west of Aleutian passes. Aleutian Pacific halibut genetic structure may result from oceanographic transport mechanisms acting as partial barriers to gene flow with fish from other Alaskan waters.

Alaska↗

Upper Cretaceous and Lower Jurassic strata in shallow cores on the Chukchi Shelf, Arctic Alaska

Shallow cores collected in the 1980s on the Chukchi Shelf of western Arctic Alaska sampled pre-Cenozoic strata whose presence, age, and character are poorly known across the region. Five cores from the Herald Arch foreland contain Cenomanian to Coniacian strata, as documented by biostratigraphy, geochronology, and thermochronology. Shallow seismic reflection data collected during the 1970s and 1980s show that these Upper Cretaceous strata are truncated near the seafloor by subtle angular unconformities, including the Paleogene mid-Brookian unconformity in one core and the Pliocene-Pleistocene unconformity in four cores. Sedimentary structures and lithofacies suggest that Upper Cretaceous strata were deposited in a low accommodation setting that ranged from low-lying coastal plain (nonmarine) to muddy, shallow-marine environments near shore. These observations, together with sparse evidence from the adjacent western North Slope, suggest that Upper Cretaceous strata likely were deposited across all of Arctic Alaska. A sixth core from the Herald Arch contains lower Toarcian marine strata, indicated by biostratigraphy, truncated by a Neogene or younger unconformity. These Lower Jurassic strata evidently were deposited south of the arch, buried structurally to high levels of thermal maturity during the Early Cretaceous, and uplifted on the Herald thrust-fault system during the mid to Late Cretaceous. These interpretations are based on regional stratigraphy and apatite fission-track data reported in a complementary report and are corroborated by the presence of recycled palynomorphs of Early Jurassic age and high thermal maturity found in Upper Cretaceous strata in two of the foreland cores. This dataset provides evidence that uplift and exhumation of the Herald thrust belt provided sediment to the foreland during the Late Cretaceous.

Professional Paper↗

Relating systematic molecular and textural properties of graptolite pyrolyzed via gold tube hydrous pyrolysis: Implications for thermal proxies in lower Paleozoic marine shales

A series of gold tube pyrolysis experiments (72 h, 300–550 °C, 50 MPa) conducted on a graptolite-rich lower Paleozoic marine shale generated pyrolysis residues for a comprehensive evaluation of the molecular and structural variability of three types of graptolite periderm. Organic petrology, Raman spectroscopy, and field emission scanning electron microscopy (FE-SEM) with energy dispersive spectroscopy (EDS) were combined to evaluate the thermal evolution process. The three types of graptolite periderm, namely granular, non-granular, and nodular graptolite, were analyzed by Raman spectroscopy wherein point measurements were obtained after the maceral was identified and the location verified by organic petrology. Distinct thermal evolution pathways among non-granular, granular, and nodular graptolite periderms were recorded. The evolution patterns of the Raman parameters, particularly D1 and G bands, highlight the differences in geochemical composition of the graptolite periderm types and the alteration of molecular structure with increasing thermal maturity. Raman parameters D1 (position of the D1 peak), G-FWHM (full width at half maximum of the G peak), and ratios D1-FWHM/G-FWHM (full width at half maximum of the D1 peak ratioed to G-FWHM) and A D1 /A G (ratio of D1 and G peak intensities) showed effectiveness in assessing thermal maturity. Bireflectance with increasing gold tube pyrolysis temperature followed a hierarchy: non-granular > granular > nodular, reflecting different molecular alignment intensities. Qualitative FE-SEM evaluation showed that fine-grained mineral inclusions (primarily Fe-sulfide as determined via EDS) were associated with the graptolite populations, with granular graptolite containing greater amounts of coarser-grained (e.g., ∼300–1400 nm) mineral inclusions relative to non-granular and nodular graptolite, which contain finer-grained (e.g., ∼100–200 nm) inclusions difficult to resolve with optical microscopy. These findings are investigated to highlight the mechanisms that drive organic matter evolution within graptolite during thermal maturation, as well as to explore some of the limitations of using spectroscopic parameters as thermal maturity proxies.

International Journal of Coal Geology↗

California State Waters Map Series — Drakes Bay and vicinity, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California&rsquo;s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Drakes Bay and Vicinity map area is located in northern California, about 30 km north of San Francisco and about 65 km south of Fort Ross. The map area is in the northern part of the Gulf of the Farallones National Marine Sanctuary, and it includes all or parts of four California Marine Protected Areas. The largely undeveloped onshore part of the map area, which occupies much of the southern and southeastern parts of the Point Reyes peninsula, is used primarily for grazing, as well as recreation, as it is home to the Point Reyes National Seashore. The triangular Point Reyes peninsula, which lies completely west of the San Andreas Fault Zone, is bounded by the steep terrain of Inverness Ridge along its northeastern margin, Tomales Point at its northernmost tip, Point Reyes at its southwesternmost point, and Bolinas at its southern end. The landscape in between includes (from southeast to northwest) the sandy beaches along Drakes Bay, the estuaries of Drakes Estero and Estero de Limantour, and the long, windswept Point Reyes Beach, which is backed by an extensive dune field. The seafloor in the map area generally extends from the shoreline to water depths of about 40 to 50 m, except for the area south of the Point Reyes headland where water depths reach 60 to 70 m. This bathymetric gradient south and west of the Point Reyes headland is related to north-side-up motion along the Point Reyes Fault Zone. Except for the bathymetric gradient across the Point Reyes Fault Zone, the bedrock platform in the nearshore and inner shelf areas (50 to 60 m depth) is relatively flat (less than 1.0&deg;) and is overlain by sand-sized to coarser grained sediment. Finer grained sediments are found in water depths greater than 60 m south of the Point Reyes headland, but they also extend into shallower (less than 40 m) water within Drakes Bay. Surficial and shallow sediments were deposited in the last about 21,000 years during the approximately 125-m sea-level rise that followed the last major lowstand associated with the Last Glacial Maximum, at which time the entire Drakes Bay and Vicinity map area was emergent and the shoreline was about 30 km south and west of the present-day shoreline. Tectonic influences that impact the shelf morphology and geology in the map area are related to local faulting, folding, uplift, and subsidence. Offshore of the Point Reyes headland, granitic basement rocks are offset vertically about 1.4 km along the Point Reyes Fault Zone; this uplift, combined with west-side-up offset on the San Andreas Fault Zone, has resulted in uplift of the Point Reyes peninsula and the adjacent shelf. Late Pleistocene uplift of marine terraces on the southern Point Reyes peninsula suggests active deformation of offshore structures west of the San Andreas Fault Zone. Pervasive stratal thinning within inferred uppermost Pliocene and Pleistocene deposits above the west strand of the Point Reyes Fault Zone suggests Quaternary active shortening of the curvilinear, northeast- to north-dipping Point Reyes Fault Zone. Lack of clear deformation in the uppermost Pleistocene and Holocene deposits suggests that activity along the Point Reyes Fault Zone has ceased or slowed since about 21,000 years ago. Seafloor habitats in the Drakes Bay and Vicinity map area range from unconsolidated continental-shelf sediment to hard substrate. Rocky-shelf outcrops and rubble are considered to be promising potential habitats for rockfish and lingcod, both of which are recreationally and commercially important species. Circulation over the continental shelf in the map area is dominated by the southward-flowing California Current, the eastern limb of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. The current flow generally is southeastward during the spring and summer; however, during the fall and winter, the otherwise persistent northwest winds are sometimes weak or absent, causing the California Current to move farther offshore and the Davidson Current, a weaker, northward-flowing countercurrent, to become active. Sediment transport in the map area largely is controlled by surface waves and tidal currents in the nearshore and, at depths greater than 20 to 30 m, by tidal and subtidal currents. In the map area, nearshore littoral drift of sand and coarse sediment is to the south, owing to the dominant west-northwest swell direction, and scour from large waves and tidal currents removes and redistributes sediment over large areas of the inner shelf. Tidal currents are particularly strong over the shelf in the map area, and they dominate the current regime in the nearshore. Further offshore, bottom currents generally flow to the northwest, distributing finer grained sediment accordingly.

California↗

Paleontology of the upper Eocene to quaternary postimpact section in the USGS-NASA Langley core, Hampton, Virginia

The USGS-NASA Langley corehole was drilled in 2000 in Hampton, Va. The core serves as a benchmark for the study of calcareous nannofossils, dinoflagellates, diatoms and silico flagellates, mollusks, ostracodes, planktonic foraminifera and bolboformids, and vertebrate remains in the upper Eocene, Oligocene, Miocene, and Pliocene sediments in southeastern Virginia. These sediments were deposited after the comet or asteroid impact that produced the Chesapeake Bay impact structure. The Chickahominy Formation was deposited rapidly in outer neritic to upper bathyal marine environments during the last 2 million years of the late Eocene. The Drummonds Corner beds are newly recognized in the Langley core. These beds appear to represent shallower water or more nearshore deposition than the underlying Chickahominy deposits. Paleontology indicates an age in the later part of the early Oligocene, with a sharp floral and faunal break between the Drummonds Corner beds and the underlying Chickahominy Formation. Late Oligocene sedimentation is represented by the Old Church Formation. The record of early and middle Miocene deposition in the Langley core is incomplete. The Calvert Formation records brief episodes of deposition in three members, which are separated by unconformities and are called the informal Newport News beds, the Plum Point Member, and the Calvert Beach Member. A second episode of rapid deposition at the Langley site is preserved as the upper Miocene St. Marys and Eastover Formations. The Eastover is overlain unconformably by the Yorktown Formation, which is both late early and early late Pliocene. The highest unit, the Tabb Formation (Pleistocene), was not studied paleontologically. Continued movement along faults and fractures of the crater and nearby region may have enhanced the contributions of older material into the various units filling the Chesapeake Bay impact crater, as suggested by the conspicuous reworking of microfossils in many of the samples from the upper Eocene and younger units in the USGS-NASA Langley core.

Virginia↗

One size does not fit all: Adapting mark-recapture and occupancy models for state uncertainty

Multistate capture?recapture models continue to be employed with greater frequency to test hypotheses about metapopulation dynamics and life history, and more recently disease dynamics. In recent years efforts have begun to adjust these models for cases where there is uncertainty about an animal?s state upon capture. These efforts can be categorized into models that permit misclassification between two states to occur in either direction or one direction, where state is certain for a subset of individuals or is always uncertain, and where estimation is based on one sampling occasion per period of interest or multiple sampling occasions per period. State uncertainty also arises in modeling patch occupancy dynamics. I consider several case studies involving bird and marine mammal studies that illustrate how misclassified states can arise, and outline model structures for properly utilizing the data that are produced. In each case misclassification occurs in only one direction (thus there is a subset of individuals or patches where state is known with certainty), and there are multiple sampling occasions per period of interest. For the cases involving capture?recapture data I allude to a general model structure that could include each example as a special case. However, this collection of cases also illustrates how difficult it is to develop a model structure that can be directly useful for answering every ecological question of interest and account for every type of data from the field.

Book chapter↗