Geology topics

Research about Puget Sound

Source-linked reports with geographic coverage including Puget Sound.

At least 37 records · Page 2Linked to original sources

USGS2020

Variable prey consumption leads to distinct regional differences in Chinook salmon growth during the early marine critical period

Growth during the early marine critical period is positively associated with survival and recruitment for Pacific salmon Oncorhynchus spp., so it is important to understand how certain foraging strategies may bolster growth in estuarine and marine environments. To elucidate how spatiotemporal and demographic differences in diet contribute to growth rate variability, we analyzed stomach contents in tandem with morphometric and hormonal indices of growth for subyearling Chinook salmon O. tshawytscha captured in Puget Sound, Washington, USA. Regional dietary patterns indicated that fish caught in northern Puget Sound ate insects in the estuarine and nearshore habitats, followed by decapod larvae, euphausiids, or forage fish in the offshore zone. In southern Puget Sound, fish ate insects in the estuary but were more likely to eat mysids and other crustaceans in the nearshore zone. In the marine habitats adjacent to the San Juan Islands, subyearlings ate forage fish, and their stomachs were as much as 1.4 to 3 times fuller than salmon captured in other regions. Scale-derived growth rates and insulin-like growth factor-1 levels showed distinct growth advantages for San Juan Islands fish which were strongly associated with the early adoption of piscivory. However, consumption of larger crustaceans such as mysids and euphausiids was also associated with greater relative growth regardless of where individuals were captured. These findings highlight how spatiotemporal differences in prey quantity, prey profitability, and individual foraging strategies result in variable growth rates among salmon populations. Specifically, they emphasize the role of piscivory in promoting early marine growth for out-migrating Chinook salmon.

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USGS2019

Seasonal use of a nonnatal marine basin by juvenile hatchery chinook salmon

Information on the movement patterns of fishes is essential for managers that are making critical resource decisions. We examined the frequency of a keystone species, Chinook Salmon Oncorhynchus tshawytscha that migrated from different marine basins to the Nisqually River estuary, which lies within the southernmost marine basin (hereafter, “South basin”) in Puget Sound (Washington, USA). Hatchery‐reared juvenile fish were sampled by using beach seine, lampara seine, and fyke nets to determine seasonal trends in frequency, habitat use, and the influence of different capture methods. The captured fish originated from three marine basins, nine Puget Sound rivers, and fourteen hatcheries. The data revealed a consistent pattern showing that most of the tagged fish (72%) were from the nearby Nisqually River (in the South basin), but fish from more northerly marine basins (hereafter, “Outbasin”) were also common. Although the majority of the tagged fish (99%) that were captured during April and May were originally released into rivers adjacent to the South basin, 90% of the fish that were captured in August and September had originated from rivers adjacent to Outbasin locations (up to 130 km distant). A comparison of sampling methods showed that the beach seine produced 27% Outbasin fish compared with 53% that were obtained with the lampara seine. The analysis of habitat use suggested that during June and July, more Outbasin fish (>40%) were captured in delta flats and nearshore habitats than in estuarine emergent marsh habitat (26%). Release location (river basin), but not distance, appeared to be an important factor that influenced the percentage of Outbasin fish that were captured in the South basin. However, it appeared that the fish that were released at light weights and early dates were more likely to be captured. Information on the movement of juvenile salmon to a nonnatal marine basin may help to increase our understanding of features of life history and survival, and it has application elsewhere, as many marine species are artificially propagated, released in large numbers, and have the potential to use nonnatal habitats.

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USGS2019

Polycyclic aromatic hydrocarbons, polychlorinated biphenyls, and metals in ambient sediment at mussel biomonitoring sites, Puget Sound, Washington

Caged mussels used as biomonitors can provide insights about ambient contaminant assemblages and spatial patterns, sources of contaminants, and contaminant exposure risks for consumers of wild and farmed mussels. This study explored the potential role of ambient sediment in the uptake of polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), and potentially toxic inorganic elements by caged mussels and complements findings from a Puget Sound-wide stormwater-contaminant mussel-monitoring survey in Washington State. In summary, ambient sediment appeared to be related to mussel uptake of lead and possibly copper at all sites, PCBs at industrial sites, and PAHs at Liberty Bay, Eagle Harbor, and, to a lesser extent, Smith Cove. These findings indicate that resuspended bed sediment is one, but not the only, pathway that filter-feeding mussels are exposed to contaminants. Overall, PAHs, PCBs, arsenic, and potentially toxic metals were low in intertidal bed sediment at the nine sites measured in Puget Sound in February 2016 and signify a low risk of sediment-bound contaminant exposure to mussels at those locations.

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USGS2019

A mosaic of estuarine habitat types with prey resources from multiple environmental strata supports a diversified foraging portfolio for juvenile Chinook salmon

Estuaries provide vital nursery habitat for threatened Chinook salmon (Oncorhynchus tshawytscha) by promoting an ecological portfolio effect, whereby multiple habitat types and environmental strata maximize foraging opportunities for out-migrating salmon by varying the abundance and composition of prey through space and time. To study this portfolio effect, we evaluated the foraging capacity of five estuarine habitat types within the Nisqually River Delta (Puget Sound, Washington, USA). Within each habitat, we sampled invertebrate prey resources from the terrestrial, aquatic, benthic, and epifaunal strata and compared them to juvenile salmon diets from corresponding sampling events. We found that the emergent salt marsh supplied twice as much aquatic prey biomass as any other habitat (720–5523 mg/m3), followed by the mudflat (246–2543 mg/m3) and eelgrass (Zostera marina; 141–2694 mg/m3) habitats. Despite some evidence for selectivity, juvenile salmon diets exhibited substantial compositional overlap, especially when compared to among-habitat differences in available prey resources. Fish that were captured in salt marsh, mudflat, and eelgrass consumed aquatic crustaceans such as mysids, while fish captured upriver in forested and transitional marshes ate a higher proportion of adult and larval insects. The availability and consumption of greater quantities of energy-poor crustaceans in the salt marsh and lower quantities of energy-rich insects upriver highlights a quantity-for-quality tradeoff among estuarine habitats. Our findings indicate that the timing, productivity, and diversity of prey across multiple habitat types and environmental strata determine an estuary’s capacity to support foraging for multiple life history strategies, size classes, and cohorts of juvenile salmon.

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USGS2019

Carbon accumulation and vertical accretion in a restored vs. historic salt marsh in southern Puget Sound, Washington, United States

Few comparisons exist between vertical accretion (VA) and carbon accumulation rates (CARs), in restored vs. historic (i.e., reference) marshes. Here we compare these processes in a formerly diked, sparsely vegetated, restored salt marsh (Six Gill Slough, SG), whose surface is subsided relative to the tidal frame, to an adjacent, relatively pristine, historic salt marsh (Animal Slough, AS). Six sediment cores were collected at both AS and SG ~six years after restoration. Cores were analyzed for bulk density, % loss of ignition, % organic carbon, and 210Pb. We found that sharp changes in bulk density in surface layers of SG cores were highly reliable markers for the onset of restoration. The mean VA since restoration at SG (0.79 (sd=0.29) cm yr-1) was ~twice that of AS (0.41 (sd=0.16) cm yr-1). In comparison, the VA at AS over 50 years was 0.30 (sd=0.09) cm yr-1. VA consisted almost entirely of inorganic sediment at SG whereas at AS it was ~55%. Mean CARs at SG were somewhat greater than at AS, but the difference was not significant due to high variability (SG: 81 - 210 g C m-2 yr-1; AS: 115 - 168 g C m-2 yr-1). The mean CAR at AS over the past 50 years was 118 (sd=23) g C m-2 yr-1. This study demonstrates that a sparsely vegetated, restored salt marsh can quickly begin to accumulate carbon and that historic and restored marshes can have similar CARs despite highly divergent formation processes.

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USGS2019

Contaminant baselines and sediment provenance along the Puget Sound Energy Transport Corridor, 2015

The transport of coal and oil can result in contaminated soil, water, and organisms from unintended releases. Trains carrying coal and crude oil regularly pass through Puget Sound, Washington, and an increase in the number of coal and oil trains is expected in the future. This study characterized levels of potentially toxic contaminants in sediment in September 2015: arsenic, metals, and polycyclic aromatic hydrocarbons (PAHs) at four sites with fine-grained sediment (Chuckanut Bay, Padilla Bay, Snohomish River Delta, Nisqually River Delta) adjacent to the Burlington Northern Santa Fe (BNSF) rail line in the Puget Sound region. Arsenic (As) and metals levels were compared to those measured at a fifth site, urban Saltwater State Park, which was expected to show contaminants associated with urbanization but not rail transport of coal and oil because it is not adjacent to the BNSF rail line. Knowledge about current properties of soil and sediment is essential for quantifying impacts of spills and other releases, and for setting remediation or restoration targets. For the sampling effort and timing of this study, all five sites had fine sediment contents of cadmium (Cd), mercury (Hg), lead (Pb), and zinc (Zn) below minimal effects levels. Pb and Zn appeared to be urban sourced. Median As, chromium (Cr), copper (Cu), and nickel (Ni) levels were in the range where adverse biological effects would possibly occur; however, Cr and Ni were geologically sourced and unlikely to be bioavailable to organisms. As, Cu, and antimony (Sb) levels were highly correlated, an association that is characteristic of legacy smelting operations; however, total sediment contents of these three elements, along with Hg and As/Sb ratios, were near natural levels and could indicate river-borne inputs. Median total PAH concentrations were highest at Snohomish River Delta, but were below minimal effects levels at all sites. Diagnostic PAH ratios were indicative of PAHs sourced from petroleum combustion and coal/biomass burning, rather than from spilled petroleum or coal. Rare earth element patterns were distinct among watersheds with Cascade volcanoes, granitic rocks, or non-volcanic sediments, making them promising sediment provenance indicators. Knowledge about sediment sources and contaminant distributions could provide unique insights about sediment-bound contaminant sourcing, delivery, and dispersal in nearshore regions.

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USGS2019

Sources, timing, and fate of sediment and contaminants in the nearshore: insights from geochemistry

Rivers in Cascade watersheds carry sediment with a volcanic composition that is distinct from the plutonic composition of the Puget lowlands. Compositional properties (signatures) allow discrimination of river-sourced Cascade from lowland sediment, and inferences about transport pathways. Surface sediment on land contains atmospheric radionuclides whose known decay rates define monthly (7Be) and decadal (210Pb) timescales of sediment inputs from land to nearshore regions. We used geochemical signatures to source river-borne sediment in two urban embayments in Cascade watersheds: Commencement Bay (CB) and Bellingham Bay (BB). We concurrently determined sediment contaminant levels and, in CB, used geochemical aging to distinguish contaminants in recent winter outflow from those that were pre-existing. Methods are described in Takesue et al. (2017). Geochemical signatures showed that Puyallup River (PU)-sourced fine sediment (<63 µm) accumulated more along the northeast (NE) shore of CB than the southwest: median 91% and 69%, respectively. River-sourced sediment from recent winter storms, containing higher 7Be activities (open circles, Fig. 1A), also accumulated on the NE shore and had lower contents of PAHs, fecal sterols, PCBs, and potentially toxic metals (TM) compared to the south shore; only PBDEs were higher (column graphs, Fig. 1A). Lower 7Be and 210Pb activities in south shore sediment indicated that contaminants there were associated with older sediment. Existing sediment in CB contained higher levels of urban contaminants than new PU material. No PAH, PCB, or TM levels in CB exceeded Washington State marine sediment quality standards (WAMSQS). Geochemical signatures were not distinct in the Nooksack River watershed and lowlands, precluding sediment sourcing in BB. PAH ratios in BB sediments were ubiquitous (open circles, Fig. 1B), suggesting atmospheric rather than riverine transport, and had values indicating biomass/coal combustion sources, except for three sites along the urban waterfront that had values indicative of vehicle emissions (closed circles, Fig. 1B). Elevated TM occurred offshore of Fairhaven (cadmium, Cd; copper, Cu; lead, Pb; zinc, Zn), Whatcom Creek Waterway (Pb, Zn), and the marina (Cu, Zn). No PAH or TM concentrations in BB exceeded WAMSQS. Insights gained from sediment geochemistry about the sources, timing, transport, and fate of riverborne fine sediment and contaminants in nearshore regions are valuable components of monitoring programs that can help guide habitat restoration and resource management decisions toward effective and sustainable outcomes.

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USGS2018

Nearshore sediment monitoring for the Stormwater Action Monitoring (SAM) Program, Puget Sound, western Washington

Chemicals such as metals and organics (polychlorinated biphenyl [PCBs], polybrominated diphenyl ethers [PBDEs], polycyclic aromatic hydrocarbons [PAHs], and phthalates) continue to enter Puget Sound, western Washington, from point sources (such as industrial and municipal outfalls) and combined sewer outfalls and non-point sources (such as stormwater runoff). Runoff during storm events has been identified as a major source of contamination entering Puget Sound and has been implicated in the degradation of nearshore habitats and biota. Metals, organic chemicals, and other pollutants are known to accumulate in sediments such as those present along the shoreline of Puget Sound. In addition to chemical contaminants, small plastic particles (known as microplastics), found in marine waters of Puget Sound and suspected of being in aquatic sediments, are a potential concern because they can be ingested by animals and are suspected of transporting sorbed chemicals such as PCBs and metals. The Stormwater Work Group of Puget Sound (SWG) (composed of State and municipal stormwater permittees, and other stakeholders) developed a strategy to address sediment conditions in the nearshore environment of Puget Sound. As part of this strategy, the SWG developed a regional stormwater monitoring strategy designed to inform monitoring requirements in National Pollutant Discharge Elimination System (NPDES) stormwater permits issued by the Washington State Department of Ecology (Ecology). The monitoring program is referred to as the Stormwater Action Monitoring (SAM). The overall focus of the work described in this report is to address one of the goals of SAM, which is to characterize the status, spatial extent, and quality of Puget Sound sediment chemicals in the nearshore urban areas. The nearshore urban areas are defined as areas parallel to established Urban Growth Areas (UGAs) using a spatially balanced probabilistic Generalized Random Tessellation Stratified (GRTS) sampling design. One of the benefits of the GRTS sampling design used for this study is that it allows one to efficiently extrapolate from a relatively small number of sampled nearshore sites to the entire nearshore shoreline within the 2011 defined UGA boundaries of Puget Sound. In addition to characterizing nearshore sediment chemical concentrations, this study also characterized the abundance of microplastics in the nearshore sediment. A total of 41 randomly selected sites were sampled throughout Puget Sound in summer and early autumn of 2016. All sampling sites were located at 6 feet below the Mean Lower Low Water line. The top 2–3 centimeters of sediment were collected using a boat-mounted, pre-cleaned stainless-steel box corer. All chemical samples were sieved to 2 millimeters and placed in appropriate containers for chemical analysis for PCBs, PBDEs, PAHs, phthalates, metals, total organic carbon, and grain size. Pre-sieved sediment samples were stored in glass containers for microplastic analysis. Nearshore sediment chemical concentrations were summarized using numerous statistical approaches to examine the minimum, mean, and maximum concentrations for each of the compounds analyzed and to compare the results to criteria and other nearshore and marine sediment studies. The GRTS sampling design also allowed the authors to assess the percentage of the UGA nearshore environment that did not meet established standards or criteria for each chemical analyzed. Additionally, regression and machine learning statistical analyses were used to examine relations between measured chemical concentrations, and land cover and geologic features at multiple scales within the watersheds adjacent to sampling sites. The influence of marine hydrodynamic factors on nearshore sediment chemical concentrations was statistically evaluated with nonparametric methods by assigning each sampling site to one of five nearshore drift cell types based on its location. The Puget Sound shoreline can be divided into segments, referred to as drift cells, based on the movement of sediment along the shore by waves. Each drift cell type has a unique influence on nearshore sediment transport. The nearshore sediment chemical concentrations for organics and metals generally were low, and in most cases less than Washington State criteria. The concentrations of some PAHs were greater than the criteria, but these exceedances were limited to one or two sites. The results of the probabilistic study design determined that, for the PAHs examined, 96 percent or more of the 1,344 km of shoreline represented by this study had concentrations less than any established criteria. For the remaining organics (PCBs and PBDEs), the probabilistic study design indicates that more than 98 percent of shoreline examined had concentrations less than criteria or proposed standards. For the metals, the results of the study indicate that 100 percent of the nearshore sediment had concentrations less than the criteria. The relations between sediment organic and metal concentrations, and adjacent watershed land cover and the particle size of the samples, were determined to be weakly related. Although weakly related, the particle size of the sediment in a sample typically explained more of the variation in metal concentrations than organics. While the measured watershed attributes adjacent to the sampling sites and sediment size of the samples were weakly related to chemical concentrations, they were significantly related to unique drift cells along the shoreline of Puget Sound known as drift cells. Each drift cell represents a long-term directional transport of sediment from its source to its depositional zone. Sediment chemical concentrations were significantly higher in drift cells with limited sediment movement compared to those with higher sediment transport energy. Microplastics in the nearshore sediment ranged from 0.02 to 0.65 pieces per gram of sediment, with a mean of 0.19 pieces per gram of sediment, and were dominated by small fibers (355–1,000 micrometers). Like chemical concentrations, microplastics concentrations in the nearshore sediment were poorly related to watershed land cover. Although not significantly different, microplastics concentrations generally were higher in the low energy drift cells compared to the high energy drift cells. The results of this study provide a statistically valid status assessment of current nearshore sediment chemical conditions throughout Puget Sound in those areas adjacent to defined UGAs. In addition to the study findings of relatively low concentrations of PCBs, PBDEs, PAHs, phthalates, and metals, the study design provides a statistically valid tool for evaluating changes in these compounds over time if future nearshore sediment assessments are done. Furthermore, the assessment of microplastic abundance represents the first study of its kind that can be used as a benchmark for future evaluations. The results of this study will help inform Ecology in the implementation of monitoring requirements as part of its NPDES stormwater permitting process.

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USGS2018

Infection by Nanophyetus salmincola and toxic contaminant exposure in out‐migrating steelhead from Puget Sound, Washington: Implications for early marine survival

Out‐migrating steelhead Oncorhynchus mykiss from four Puget Sound rivers and associated marine basins of Puget Sound in Washington State were examined for the parasite, Nanophyetus salmincola in 2014 to determine whether recent trends in reduced marine survival are associated with the presence of this pathogen. A subset of steelhead from three of these river–marine basin combinations was analyzed for the presence of persistent organic pollutants (POPs) to assess whether exposure to these contaminants is a contributing factor to their reduced marine survival. The prevalence and parasite load of N. salmincola were significantly higher in fish from central and southern Puget Sound than in fish from river systems in northern Puget Sound. The proportion of steelhead samples with concentrations of POPs higher than adverse effects thresholds (AETs) or concentrations known to cause adverse effects was also greater in fish from the central and southern regions of Puget Sound than in those from the northern region. Polybrominated diphenyl ether concentrations associated with increased disease susceptibility were observed in 10% and 40% of the steelhead sampled from central and southern Puget Sound regions, respectively, but in none of the fish sampled from the northern region. The AET for polychlorinated biphenyls was exceeded in steelhead collected from marine habitats: 25% of the samples from the marine basins in the central and southern regions of Puget Sound and 17% of samples from northern Puget Sound region. Both N. salmincola and POP levels suggest there are adverse health effects on out‐migrating steelhead from one southern and one central Puget Sound river that have lower early marine survival than those from a river system in northern Puget Sound.

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USGS2018

Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds

Lampreys have a worldwide distribution, are functionally important to ecological communities and serve significant roles in many cultures. In Pacific coast drainages of North America, lamprey populations have suffered large declines. However, lamprey population status and trends within many areas of this region are unknown and such information is needed for advancing conservation goals. We developed two quantitative PCR-based, aquatic environmental DNA (eDNA) assays for detection of Pacific Lamprey ( Entosphenus tridentatus ) and Lampetra spp, using locked nucleic acids (LNAs) in the probe design. We used these assays to characterize the spatial distribution of lamprey in 18 watersheds of Puget Sound, Washington, by collecting water samples in spring and fall. Pacific Lamprey and Lampetra spp were each detected in 14 watersheds and co-occurred in 10 watersheds. Lamprey eDNA detection rates were much higher in spring compared to fall. Specifically, the Pacific Lamprey eDNA detection rate was 3.5 times higher in spring and the Lampetra spp eDNA detection rate was 1.5 times higher in spring even though larval lamprey are present in streams year-round. This significant finding highlights the importance of seasonality on eDNA detection. Higher stream discharge in the fall likely contributed to reduced eDNA detection rates, although seasonal life history events may have also contributed. These eDNA assays differentiate Pacific Lamprey and Lampetra spp across much of their range along the west coast of North America. Sequence analysis indicates the Pacific Lamprey assay also targets other Entosphenus spp and indicates the Lampetra spp assay may have limited or no capability of detecting Lampetra in some locations south of the Columbia River Basin. Nevertheless, these assays will serve as a valuable tool for resource managers and have direct application to lamprey conservation efforts, such as mapping species distributions, occupancy modeling, and monitoring translocations and reintroductions.

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USGS2018

Size, growth, and size‐selective mortality of subyearling Chinook Salmon during early marine residence in Puget Sound

In marine ecosystems, survival can be heavily influenced by size‐selective mortality during juvenile life stages. Understanding how and when size‐selective mortality operates on a population can reveal underlying growth dynamics and size‐selective ecological processes affecting the population and thus can be used to guide conservation efforts. For subyearling Chinook Salmon Oncorhynchus tshawytscha in Puget Sound, previous research reported a strong positive relationship between marine survival and body mass during midsummer in epipelagic habitats within Puget Sound, suggesting that early marine growth drives survival. However, a fine‐scale analysis of size‐selective mortality is needed to identify specific critical growth periods and habitats. The objectives of this study were to (1) describe occupancy patterns across estuarine delta, nearshore marine, and offshore epipelagic habitats in Puget Sound; (2) describe changes in FL and weight observed across habitats and time; (3) evaluate evidence for size‐selective mortality; and (4) illustrate how marine survival of the stocks studied may be affected by variation in July weight. In 2014 and 2015, we sampled FLs, weights, and scales from seven hatchery‐origin and two natural‐origin stocks of subyearling Chinook Salmon captured every 2 weeks during out‐migration and rearing in estuary, nearshore, and offshore habitats within Puget Sound. Natural‐origin stocks had more protracted habitat occupancy patterns than hatchery‐origin stocks and were smaller than hatchery‐origin stocks in both years. Regardless of origin, subyearlings were longer and heavier and grew faster in offshore habitats compared to estuary and nearshore habitats. For all stocks, we found little evidence of size‐selective mortality among habitats in Puget Sound. These patterns were consistent in both years. Finally, the weights of subyearlings sampled during July in the offshore habitat predicted Puget Sound‐wide marine survival rates of 0.4% for 2014 and 2.0% for 2015, with stock‐specific predictions ranging from 0.18% to 11.70%.

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USGS2017

Gauging resource exploitation by juvenile Chinook salmon (Oncorhynchus tshawytscha) in restoring estuarine habitat

In the context of delta restoration and its impact on salmonid rearing, success is best evaluated based on whether out-migrating juvenile salmon can access and benefit from suitable estuarine habitat. Here, we integrated 3 years of post-restoration monitoring data including habitat availability, invertebrate prey biomass, and juvenile Chinook salmon ( Oncorhynchus tshawytscha ) physiological condition to determine whether individuals profited from the addition of 364 ha of delta habitat in South Puget Sound, Washington, United States. Productivity in the restored mudflat was comparable to reference sites 3 years after dike removal, surpassing a mean total of 6 million kJ energy from invertebrate prey. This resulted from the development of a complex network of tidal channels and a resurgence in dipteran biomass that was unique to the restoration area. Consequently, a notable shift in invertebrate consumption occurred between 2010 and 2011, whereby individuals switched from eating primarily amphipods to dipteran flies; however, dietary similarity to the surrounding habitat did not change from year to year, suggesting that this shift was a result of a change in the surrounding prey communities. Growth rates did not differ between restored and reference sites, but catch weight was positively correlated with prey biomass, where greater prey productivity appeared to offset potential density-dependent effects. These results demonstrate how the realized function of restoring estuarine habitat is functionally dependent. High prey productivity in areas with greater connectivity may support healthy juvenile salmon that are more likely to reach the critical size class for offshore survival.

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USGS2016

Assessing landslide potential on coastal bluffs near Mukilteo, Washington—Geologic site characterization for hydrologic monitoring

During the summer 2015, the U.S. Geological Survey collected geologic and geotechnical data for two sites on coastal bluffs along the eastern shore of Puget Sound, Washington. The U.S. Geological Survey also installed hydrologic instrumentation at the sites and collected specimens for laboratory testing. The two sites are located on City of Mukilteo open-space land and are about 0.6 kilometers apart. The bluffs at each site are approximately 42 meters high, and rise steeply from the shoreline with 32–35° slopes. The more northerly of the two sites occupies an active landslide and is mostly unvegetated. The other site is forested, and although stable during the preparation of this report, shows evidence of historical and potential landslide activity. The slopes of the bluffs at both sites are mantled by a thin, nonuniform colluvium underlain by clay-rich glacial deposits and tills of the Whidbey Formation or Double Bluff Drift. Till consisting of sand, gravel, and cobbles caps the bluffs and rests on finer grained glacial deposits of sand, silt, and clay. These types of different glacial deposits are dense, vertically fractured, and generally have low permeability, but field observations indicate that locally the deposits are sufficiently permeable to allow lateral flow of water along fractures and subhorizontal boundaries between deposits of different texture. Laboratory tests indicate that many of the deposits are highly plastic, with low hydraulic conductivity, and moderate shear strength. Steep slopes combined with the strength and hydraulic characteristics of the deposits leave the bluffs prone to slope instability, particularly during the wet season when infiltrating rainfall changes moisture content, pore-water pressure, and effective stress within the hillslope. The instrumentation was designed to primarily observe rainfall variability and hydrologic changes in the subsurface that can affect stability of the bluffs, and also to compare the hydrologic response between areas where previous landslides have disturbed vegetation and areas where the bluff is apparently more stable and well vegetated.

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USGS2016

Changes in habitat availability for outmigrating juvenile salmon (Oncorhychus spp.) following estuary restoration

The restoration of the Nisqually River Delta (Washington, U.S.A.) represents one of the largest efforts toward reestablishing the ecosystem function and resilience of modified habitat in the Puget Sound, particularly for anadromous salmonid species. The opportunity for outmigrating salmon to access and benefit from the expansion of available tidal habitat can be quantified by several physical attributes, which are related to the ecological and physiological responses of juvenile salmon. We monitored a variety of physical parameters to measure changes in opportunity potential from historic, pre-restoration, and post-restoration habitat conditions at several sites across the delta. These parameters included channel morphology, water quality, tidal elevation, and landscape connectivity. We conducted fish catch surveys across the delta to determine if salmon was utilizing restored estuary habitat. Overall major channel area increased 42% and major channel length increased 131% from pre- to post-restoration conditions. Furthermore, the results of our tidal inundation model indicated that major channels were accessible up to 75% of the time, as opposed to 30% pre-restoration. Outmigrating salmon utilized this newly accessible habitat as quickly as 1 year post-restoration. The presence of salmon in restored tidal channels confirmed rapid post-restoration increases in opportunity potential on the delta despite habitat quality differences between restored and reference sites.

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USGS2016

Modeling the effects of urban expansion on natural capital stocks and ecosystem service flows: A case study in the Puget Sound, Washington, USA

Urban expansion and its associated landscape modifications are important drivers of changes in ecosystem service (ES). This study examined the effects of two alternative land use-change development scenarios in the Puget Sound region of Washington State on natural capital stocks and ES flows. Land-use change model outputs served as inputs to five ES models developed using the Artificial Intelligence for Ecosystem Services (ARIES) platform. While natural capital stocks declined under managed (1.3–5.8%) and unmanaged (2.8–11.8%) development scenarios, ES flows increased by 18.5–56% and 23.2–55.7%, respectively. Human development of natural landscapes reduced their capacity for service provision, while simultaneously adding beneficiaries, particularly along the urban fringe. Using global and local Moran’s I, we identified three distinct patterns of change in ES due to projected landuse change. For services with location-dependent beneficiaries – open space proximity, viewsheds, and flood regulation – urbanization led to increased clustering and hot-spot intensities. ES flows were greatest in the managed land-use change scenario for open space proximity and flood regulation, and in the unmanaged land-use change scenario for viewsheds—a consequence of the differing ES flow mechanisms underpinning these services. We observed a third pattern – general declines in service provision – for carbon storage and sediment retention, where beneficiaries in our analysis were not location dependent. Contrary to past authors’ finding of ES declines under urbanization, a more nuanced analysis that maps and quantifies ES provision, beneficiaries, and flows better identifies gains and losses for specific ES beneficiaries as urban areas expand.

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USGS2015

Effects of geoduck (Panopea generosa) aquaculture on resident and transient macrofauna communities of Puget Sound, Washington, USA

In Washington state, commercial culture of geoducks ( Panopea generosa ) involves large-scale out-planting of juveniles to intertidal habitats, and installation of PVC tubes and netting to exclude predators and increase early survival. Structures associated with this nascent aquaculture method are examined to determine whether they affect patterns of use by resident and transient macrofauna. Results are summarized from regular surveys of aquaculture operations and reference beaches in 2009 to 2011 at three sites during three phases of culture: (1) pregear (-geoducks, -structure), (2) gear present (+geoducks, +structures), and (3) postgear (+geoducks, -structures). Resident macroinvertebrates (infauna and epifauna) were sampled monthly (in most cases) using coring methods at low tide during all three phases. Differences in community composition between culture plots and reference areas were examined with permutational analysis of variance and homogeneity of multivariate dispersion tests. Scuba and shoreline transect surveys were used to examine habitat use by transient fish and macroinvertebrates. Analysis of similarity and complementary nonmetric multidimensional scaling were used to compare differences between species functional groups and habitat type during different aquaculture phases. Results suggest that resident and transient macrofauna respond differently to structures associated with geoduck aquaculture. No consistent differences in the community of resident macrofauna were observed at culture plots or reference areas at the three sites during any year. Conversely, total abundance of transient fish and macroinvertebrates were more than two times greater at culture plots than reference areas when aquaculture structures were in place. Community composition differed (analysis of similarity) between culture and reference plots during the gear-present phase, but did not persist to the next farming stage (postgear). Habitat complexity associated with shellfish aquaculture may attract some structure-associated transient species observed infrequently on reference beaches, and may displace other species that typically occur in areas lacking epibenthic structure. This study provides a first look at the effects of multiple phases of geoduck farming on macrofauna, and has important implications for the management of a rapidly expanding sector of the aquaculture industry.

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USGS2015

Study 8: Prevalence and load of Nanophyetus salmincola infection in outmigrating steelhead trout from five Puget Sound rivers

Nanophyetus salmincola is a parasitic trematode, or flatworm, that infects salmonid fishes in the Pacific Northwest, including Washington, Oregon, and portions of California. The adult worm lives in the intestine of fish-eating birds and mammals. Eggs shed into the water hatch into miracidia which penetrate the first intermediate host, one of two species of snail Juga plicifera or J. silicula . Asexual reproduction occurs within the snail. Free-swimming cercaria are released from the snail and penetrate the secondary intermediate host, often a salmonid fish, in fresh and brackish water. The cercaria encyst as metacercaria in various organs of the fish, including gills, muscle and heart, but favor the posterior kidney. Penetration and migration by the cercaria through the fish causes damage to nearly every organ system. Once encysted, metacercaria survive the ocean phase of salmonid life cycle. N. salmincola is a likely contributor to mortality of juvenile coho salmon ( Oncorhynchus kisutch ) during the early ocean rearing phase, and it is the most prevalent pathogen of outmigrating steelhead in the estuaries of the Pacific Northwest. A field survey was implemented from March-June 2014 to compare the prevalence and parasite load of N. salmincola infections in outmigrating steelhead from five Puget Sound watersheds and to assess changes in infection levels that occurred during the smolt out-migration through each watershed. N. salmincola infection prevalence and parasite loads were determined by counting metacercaria in posterior kidney samples. Tissue samples were collected and examined by standard histological methods.

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USGS2014

Aquaculture disturbance impacts the diet but not ecological linkages of a ubiquitous predatory fish

Aquaculture operations are a frequent and prominent cause of anthropogenic disturbance to marine and estuarine communities and may alter species composition and abundance. However, little is known about how such disturbances affect trophic linkages or ecosystem functions. In Puget Sound, Washington, aquaculture of the Pacific geoduck clam ( Panopea generosa ) is increasing and involves placing nets and polyvinyl chloride (PVC) tubes in intertidal areas to protect juvenile geoducks from predators. Initial studies of the structured phase of the farming cycle have documented limited impacts on the abundance of some species. To examine the effect of geoduck aquaculture on ecological linkages, the trophic relationships of a local ubiquitous consumer, Pacific staghorn sculpin ( Leptocottus armatus ), to its invertebrate prey were compared between geoduck aquaculture sites and nearby reference areas with no aquaculture. Mark-recapture data indicated that sculpin exhibit local site fidelity to cultured and reference areas. The stomach contents of sculpin and stable isotope signatures of sculpin and their prey were examined to study the trophic ecology of cultured and reference areas. Results showed that the structured phase of geoduck aquaculture initiated some changes to staghorn sculpin ecology, as reflected in sculpin diet through stomach content analysis. However, carbon and nitrogen stable isotopes revealed that the general food web function of sculpin remained unchanged. The source of carbon at the base of the food web and the trophic position of sculpin were not impacted by geoduck aquaculture. The study has important implications for geoduck aquaculture management and will inform regulatory decisions related to shellfish aquaculture policy.

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