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Research about Oregon

Source-linked reports with geographic coverage including Oregon.

At least 91 records · Page 5Linked to original sources

Spatio-temporal distribution of adult Pacific lamprey Entosphenus tridentatus relative to habitat fragmentation

Pacific lamprey ( Entosphenus tridentatus ), a fish species native to the Pacific Northwest (USA), have distinctive cultural and ecological value but determining their spatial and temporal distribution is challenging due to a general lack systematic monitoring. In this study, we used counts of Pacific lamprey redds to model the probability of occurrence and abundance of Pacific lamprey based on environmental covariates including artificial barriers, assuming higher predicted lamprey redds translates to more suitable spawning habitats. Using generalized linear mixed zero-inflated models, results suggest that Pacific lamprey abundance was generally lower in high gradient streams, further from the ocean. Stream reaches with warmer spring water temperatures and greater historical median spring flows supported higher abundances. Lamprey occurrence was primarily influenced by spring water temperatures and distance from the ocean. We further observed that when streams warm beyond 18°C, confidence intervals around the abundance estimates widen and zero-inflation increases, indicating a decrease in occurrence. One objective of the study was to recommend where barrier removal or restoration should be prioritized to increase passage and thus access to upstream habitats. We considered artificial barriers to primarily influence the probability of occurrence through access. The barrier variable in this model had a negative effect on the probability of lamprey occurrence, but it was not a strong predictor in the model. While we are not able to suggest specific locations that would most benefit barrier removal or improvement based on these model results, we can identify the watersheds with a higher probability to support Pacific lamprey and provide potential additional habitats by improving habitat connectivity. Focusing restoration and/ or removal of barriers on watersheds in the Mid-South region of the Oregon Coast (i.e., Alsea, Siuslaw, Coos, Coquille, and Sixes rivers) with higher habitat suitability could prioritize use of limited funds, increase the probability of benefiting Pacific lamprey, and potentially other native lampreys and migratory (e.g., salmon, steelhead; Oncorhynchus ) species. Although this manuscript focuses on the Oregon Coast region, the methods are transferrable to other regions where Pacific lamprey are present.

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Total phosphorus and suspended-sediment concentrations and loads from two main tributaries to Upper Klamath Lake, Oregon, 2014–20

Total phosphorus (TP) and suspended-sediment concentrations (SSC) and loads were computed at two U.S. Geological Survey (USGS) streamgages in the upper Klamath River Basin on the Sprague (USGS site ID 11501000) and Williamson (USGS site ID 11502500) Rivers using high temporal resolution turbidity and streamflow data to develop surrogate regression models. Regression models were updated and validated for TP at the Williamson River site, and additional data improved a prior published TP model, increasing the coefficient of determination (R 2 ) from 0.73 to 0.88. A new TP regression model was developed for the Sprague River site using 2 years of data and showed promising results with an R 2 of 0.93. Suspended-sediment concentration (SSC) surrogate models were also updated at these sites using a longer period of record than the TP models and improved characterization of sediment transport conditions at these monitoring sites. Computations of TP loads were compared to the annual loading capacity dictated by the total maximum daily load (TMDL) for Upper Klamath Lake and showed that the combined TP load of the Williamson and Sprague Rivers approaches the annual loading capacity in water years with high annual streamflow. TP loads were also compared to loads computed by the Klamath Tribes using a long-term dataset and a regression and interpolation algorithm (RIA). The comparison showed that the two methods report similar annual loads, with the surrogate regression method generally reporting lower loads than the RIA, and the RIA annual loads falling within the range of uncertainty of the surrogate regression model results. Determining the effect of habitat and stream restoration on basin-scale TP and suspended-sediment loading is challenging using the surrogate regression method at these sites given the short period of record that TP and suspended-sediment load (SSL) data are available. However, long-term analysis by the Klamath Tribes in their larger monitoring network could provide insight into the impact of restoration at smaller spatial scales compared to the basin-wide assessment produced in this study.

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Reservoir evolution, downstream sediment transport, downstream channel change, and synthesis of geomorphic responses of Fall Creek and Middle Fork Willamette River to water years 2012–18 streambed drawdowns at Fall Creek Lake, Oregon

Executive Summary Chapter A. Introduction Fall Creek Dam impounds Fall Creek Lake, a 10-kilometer-long reservoir in western Oregon and is operated by the U.S. Army Corps of Engineers (USACE) primarily for flood-risk management (or flood control) in late autumn through early spring months, as well as for water quality, irrigation, recreation, and habitat in late spring through early autumn. Since 2011 (water year [WY] 2012), Fall Creek Lake has been temporarily drawn down each year to facilitate downstream passage of juvenile spring Chinook salmon ( Oncorhynchus tshawytscha ) through the 55-meter (m) high dam. This annual dam operation is temporary, typically lasting about 1–2 weeks from WY 2012 through 2020 (drawdown operations in WY 2022–24 have increased to more than 6 weeks). Drawdown of the reservoir results in lake levels being lowered to the elevation near the historical, pre-dam streambed. The annual streambed drawdowns of WY 2012–18 have improved fish passage and led the USACE to formally adopt streambed drawdowns as part of annual operations at Fall Creek Dam. However, temporarily lowering the lake to streambed creates free-flowing conditions in the reservoir that result in the erosion and episodic export of predominantly sand and finer-grained sediments (less than 2 millimeters [mm]) to the lower gravel-bed reaches of Fall Creek and the Middle Fork Willamette River. The introduction of large volumes of sand and finer-grain sediment into the dam-regulated reaches downstream from Fall Creek Dam prompted questions about the geomorphic responses to annual streambed drawdowns within Fall Creek Lake and downstream reaches along Fall Creek and the Middle Fork Willamette River. The U.S. Geological Survey (USGS) in partnership with USACE initiated a comprehensive geomorphic and sediment transport investigation to assess the coupled processes of reservoir erosion, sediment evacuation from Fall Creek Lake, and patterns of sediment transport and deposition in reaches downstream from the Fall Creek Dam that have resulted from annual streambed drawdowns. The purpose of this report is to systematically describe the processes of sediment erosion, transport, and deposition at Fall Creek Lake and geomorphic interactions between reaches upstream and downstream from Fall Creek Dam that relate to dam operations. Specifically, this report focuses on evaluating geomorphic responses to streambed drawdowns from WY 2012 through 2018 and placing drawdown-induced geomorphic responses within the broader context of physiographic and historical conditions and dam operations of Fall Creek and Middle Fork Willamette Rivers. Key objectives for this study were to characterize changes in reservoir morphology and substrate at Fall Creek Lake, describe the character and temporal pattern of sediment transport downstream from Fall Creek Dam, characterize geomorphic changes in channel reaches downstream from the Fall Creek Dam, and relate these data to the annual streambed drawdowns of WY 2012–18. This study uses multiple independent monitoring and measurement approaches to assess site, reach, and river-scale geomorphic responses to drawdowns to inform dam and reservoir management. Patterns and processes of reservoir evolution were assessed with geomorphic mapping and volumetric analyses of topography through comparison of multiple digital surface models (DSMs). Just downstream from Fall Creek Dam, analyses of sediment export from the reservoir focused on suspended sediment but also incorporated bedload analyses to assess sediment sizes. Geomorphic assessments downstream from the dam used reach-scale and site-scale approaches to document changes in channel morphology and substrate, including site measurements of sand and finer-grained sediment deposition and in-channel bed-material, volumetric change analyses from comparison of digital elevation models (DEMs), and repeat geomorphic mapping. Findings from this study inform river management and dam operations by providing an understanding of (1) coupled upstream-downstream geomorphic responses to the Fall Creek Lake streambed drawdowns, (2) geomorphic responses of Fall Creek Lake streambed drawdowns in comparison to drawdowns at other large dams, (3) controls on reservoir erosion and downstream geomorphic responses, and (4) implications for future hydrogeomorphic changes that may result from continued drawdowns and monitoring activities to assess those changes. Chapter B. Reservoir Morphology and Evolution Related to Dam Operations at Fall Creek Lake To understand the volume and distribution of sediment accumulation in Fall Creek Lake since dam closure in 1965, decadal-scale sedimentation patterns (spanning approximately 1965–2016) are evaluated using a combination of storage curve analyses and geomorphic mapping. Short-term (drawdown event-scale) patterns of erosion, sedimentation, and sediment export downstream are evaluated using a combination of geomorphic mapping and change detection analyses that quantify the distribution and total volume of sediment erosion and deposition within Fall Creek Lake. Geomorphic mapping of reservoir topography and analyses of historical datasets reveals four categories of landforms and sediment processes within Fall Creek Lake related to lake level operations: lacustrine sedimentation expressed in the reservoir floor, fluvial erosion and deposition within historical stream channels during streambed drawdowns, channel-like features created by erosion within the reservoir floor during streambed drawdowns, and erosion on reservoir hillslopes. Where the reservoir floor is mapped for this study as pelagic (deep water), deposition up to 3 meters (m) thick by lacustrine processes and burial of pre-dam topography with deposits thinning toward the edges of the valley floor and upstream areas of reservoir are observed. Despite over 50 years of sediment accumulation since dam construction, the main stream channels of Fall and Winberry Creeks (or reservoir thalwegs) through the reservoir are well defined, though their distinct morphology is likely influenced by a long history of recurring historical drawdowns to or near streambed since dam construction. Unregulated streamflow and sediment transport through the reservoir primarily are confined to these channels during the streambed drawdown periods. Erosional channel-like features created by drawdowns are carved through underlying, unconsolidated reservoir floor sediments and are most prominent in the lower reservoir below minimum conservation pool (the low pool elevation during winter flood season); sediment generated from the formation of these drawdown channels is more likely to be transported through and out of the reservoir than sediment deposits along the reservoir hillslopes at the valley margins that are separated from main channels by areas of low-gradient reservoir floor. Morphologic changes in the lower reservoir topography between January 2012 and November 2016 indicate overall net erosion of about 129,500 cubic meters (m 3 ). The most prominent geomorphic changes occurred along the main channels of Fall and Winberry Creeks near the Fall Creek Dam where incision, lateral migration, and slumping banks resulted in vertical and lateral adjustments to channel position, whereas most changes fell below the detectable limit on higher-elevation reservoir floor surfaces except where erosion occurred along features mapped as drawdown channels. Chapter C. Sediment Delivery from Fall Creek Lake and Transport through Downstream Reaches USGS implemented a sediment monitoring program in WY 2013–18 to evaluate the quantity and character of reservoir sediment exported from Fall Creek Lake during streambed drawdowns. Turbidity and suspended sediments were monitored annually autumn through spring to span the WY 2013–18 streambed drawdowns; however, unequal monitoring timeframes each year reduced the ability to compare results and factors affecting sediment export from the reservoir difficult between years. These data were originally measured to develop regressions and compute suspended-sediment loads (SSL). Bedload sediment monitoring from a cableway at the Fall Creek streamgage was completed in the autumn-winter of WY 2013 and 2017. The limited number of samples and presumed variability in sediment supply from the reservoir precluded construction of streamflow and bedload discharge relations to compute more than instantaneous bedload. Sand and finer-grained silts and clays were transported from the reservoir in suspension, though some coarser grains (up to 32 mm) were also mobilized and transported downstream from the dam as bedload. Observations of increased sediment transport downstream from Fall Creek Dam coincided with lake levels approaching about 3 m (10 feet [ft] or elevation 690 ft) above the streambed regulating outlets. Suspended-sediment loads computed for the full monitoring periods WY 2013–18 at the Fall Creek streamgage, located 1.4 kilometers (km) downstream from Fall Creek Dam, range from 54,700 metric tons (t) in WY 2013 to 13,900 t in WY 2018. Although the total annual SSL varied from year to year, the overall seasonal patterns of suspended sediment transport throughout each year were similar during monitoring in WY 2013-18. Suspended-sediment loads were low prior to the drawdown, then increased rapidly as lake levels lowered and approached the streambed. In the weeks following the drawdown period, as pool levels were increased, SSL remained slightly elevated above pre-drawdown levels but generally declined through the following winter and spring except during streamflow-driven pulses of suspended-sediment transport. WY 2013 had the greatest total computed SSL for each streambed drawdown and partial-year monitoring period. SSL computed for the partial-year period have generally decreased since WY 2013 and have varied by about 6,800 t with the exception of WY 2014. WY 2014 SSL reflects anomalously low sediment export due to low streamflows and freezing conditions that stabilized reservoir floor deposits. Bedload measurements in the short 1.4-km reach between Fall Creek Dam and the Fall Creek streamgage showed an inverse correlation between bedload transport rates and discharge, which probably reflects diminishing supply of coarse-sized sediment. Sand was more abundant (60–100 percent) than gravel in bedload samples confirming sand and finer-grained sediment dominated sediment evacuated from the reservoir during streambed drawdowns at Fall Creek Lake. Chapter D. Geomorphic Responses to Fall Creek Lake Streambed Drawdowns Downstream from Fall Creek Dam In the days, weeks, and months following streambed drawdown operations at Fall Creek Dam through WY 2018, sites downstream from the dam displayed a variety of geomorphic responses to reservoir sediment delivery within the main channel and overbank areas. Evaluation of streambed elevations at two streamgages located 1.4 km downstream from the dam on Fall Creek and 16.3 km downstream from the dam on the Middle Fork Willamette River indicated the effects of drawdown sediment on bed elevations were modest and transient. Repeat particle size measurements (October 2015 and September 2016) at five sites along Fall Creek and the Middle Fork Willamette River showed similar grain-sized distributions that do not reveal substantial deposition of fine-grained sediment related to the WY 2016 streambed drawdown. Altogether, these findings indicate that transport capacity in the main, low-flow channels of Fall Creek and Middle Fork Willamette River during WY 2012–18 was sufficient to mobilize and evacuate reservoir sediments from streambed drawdowns or other bank material and tributary sources. However, other monitoring for this study indicate low-velocity zones in off-channel areas are prime locations for sand and finer-grain sediment deposition. Patterns of overbank sediment accumulation indicate that the magnitude and timing of overbank deposition on bars and low-elevation floodplain varies with proximity to the dam, geomorphic setting, streamflows, and other factors. Sand and finer-grained reservoir sediments carried as suspended-sediment load in the reaches downstream from Fall Creek Dam were deposited in overbank areas as observed with clay-horizon markers during WY 2016–17. Overbank deposition quantified with Geomorphic Change Detection (GCD) software evaluated landform-scale patterns of erosion and deposition using repeat light detection and ranging (lidar) surveys at two sites in the Upper Fall Creek reach and one site in the Jasper reach for 3 years (2012–15) and one site in the Clearwater reach for 6 years (2009–15). Deposition thickness and spatial patterns from the GCD analysis were variable; some sites had dispersed but measurable deposition while at others, deposition was highly localized and exceeded 1 m in depth. Patterns of overbank deposition illustrate interactions among bar morphology, local hydraulics, and suspended-sediment transport dynamics that can create patches of highly localized deposition. The measured deposition at the two Fall Creek GCD sites likely resulted from reservoir sediments released from Fall Creek Lake during streambed drawdowns in WY 2016 and 2017 because the limited sediment inputs from bank material (geomorphically laterally stable reach) or tributaries (no significant tributaries) provided few other sediment sources. On the Middle Fork Willamette River, observed patterns of overbank deposition could reflect sediment sourced from upstream tributaries, bank erosion, or Fall Creek Lake streambed drawdown operations. Despite the introduction of several thousand tons of reservoir sediment delivered from the Fall Creek Lake streambed drawdowns to below-dam river corridors, reach-scale mapping of channel features downstream from Fall Creek Dam shows minimal evidence of changes in channel planform or landforms that can be attributed to a drawdowns in WY 2012–16. On Upper Fall Creek reach, widespread increases in gravel bars or other in-channel sediment did not result from the five streambed drawdowns. The main changes attributable to sediment releases from Fall Creek Lake were localized increases in vegetated bar area, particularly on channel margin areas where sand and finer-grain sediment was deposited and rapidly colonized by vegetation. The area of mapped secondary water features decreased between 2005 and 2016, but that may be due to lower discharges depicted in the 2016 aerial photographs and less mapped area of inundation. Primary changes along the Lower Fall Creek reach include a 6.4 percent decrease in area of secondary water features between 2011 and 2016, and a nearly twofold increase in the area of unvegetated bars. Immediately downstream from the Fall Creek confluence, there were negligible changes in the location and areas of vegetated bars and the main wetted channel between 2005 and 2016, and local increases in bar area cannot be attributed solely to deposition of reservoir sediments from Fall Creek Lake because (1) areas along the Middle Fork Willamette River just upstream from the Fall Creek confluence display similar type and magnitude of changes and (2) some of the increases at the confluence area pre-date the drawdowns. The cumulative effect of sediment releases from Fall Creek Lake streambed drawdowns from WY 2012 to 2016 on downstream channel planform and landforms are modest compared to the river-scale transformations and planform changes that occurred in the decades following dam construction. Chapter E. Discussion of Geomorphic Responses of Fall Creek and Middle Fork Willamette River to Streambed Drawdowns at Fall Creek Lake Multiple aspects of Fall Creek Dam infrastructure and operations exert first-order controls on the magnitudes of reservoir erosion that occur during the streambed drawdowns and ultimately determine the sediment delivery to downstream reaches. Key aspects of the dam and its operations that are most relevant to assessing geomorphic responses to streambed drawdowns include the (1) dam infrastructure, including configuration and size of regulating outlets and their proximity to the streambed which dictates the capacity and competence of the river to deliver sediment to downstream reaches and mode of sediment transport as suspended-sediment load or bedload; (2) frequency of historical drawdowns and long-term, year-round dam operations and lake level management, which partly dictate reservoir morphology and locations and magnitudes of readily erodible materials; (3) dam operations and hydroclimatic conditions during the streambed drawdown (including length of the drawdown and streamflows entering the reservoir), which directly control the timing, duration and magnitude of reservoir erosion and sediment evacuation; and (4) dam operations following the streambed drawdown operation that regulate streamflows (and thereby sediment transport conditions) downstream of Fall Creek Dam which primarily reflect interactions between hydroclimatic conditions and flood control operations. Patterns of sediment erosion and evacuation observed in this study at Fall Creek Lake from WY 2012–18 suggest that reservoir erosion during annual streambed drawdowns may remain similar or decrease in future years assuming (1) annual streambed drawdown operations are implemented in similar manner as the WY 2012–18 drawdowns (in terms of duration, late autumn or early winter implementation, rate of pool-level lowering to reach streambed, and other factors), (2) streambed drawdowns coincide with similar conditions as were observed WY 2012–18 (similar sediment yield into reservoir, low reservoir inflows, limited precipitation, moderate air temperature), and (3) no major geomorphic changes in the main reservoir channels of Fall and Winberry Creeks occur (for example, channel avulsion). Under such conditions, it is hypothesized that the stream channel within the reservoir would achieve a quasi-equilibrium state with respect to annual influx and export of sediment and aided by the substantial amount of in-channel bedrock, will remain laterally stable without erosion across reservoir deposits. Patterns of sediment transport measured at the Fall Creek streamgage downstream from Fall Creek Dam provide insight into the potential effects of future streambed drawdowns at Fall Creek Lake. Analyses of suspended sediment measured in WY 2013–18 show a major reduction in suspended-sediment loads between WY 2013 and later years, indicating streamflows transporting sediment through the reservoir to downstream reaches during streambed drawdowns have become supply limited. The 6-year suspended-sediment monitoring and sampling program is insufficient to make predictions about future sediment transport conditions because of uneven monitoring periods and varying controls on reservoir sediment erosion. It is likely that future suspended-sediment loads will be variable but similar to those observed in WY 2015–18 if operational, climatic, and geomorphological factors remain similar to those monitored WY 2015–18. Suspended-sediment loads downstream from Fall Creek Lake will likely remain highest when regulating outlets are fully open and Fall Creek is free flowing with the reservoir fully drained with little to no residual pool. Over time, it is possible that the suspended-sediment loads would reflect mobilization of reservoir sediment deposited in the previous year rather than erosion of sediment deposited years or decades earlier. Bedload is likely to remain a small fraction of the total sediment load evacuated from the reservoir and is relatively modest compared with pre-dam bedload transport rates because most coarse sediment remains trapped by the dam. If sediment releases from Fall Creek Lake and ensuing streamflow conditions follow a similar pattern in the future as was assessed in this study spanning WY 2012–18, near-term geomorphic adjustments downstream of the dam are expected to be modest. Barring major operational, climatic, and geomorphological changes, local site-scale deposition on bars, overbank areas, or off-channel features that persists several months after the streambed drawdown will likely continue to be highly variable, ranging from negligible to several centimeters of deposition. At the landform-scale, low velocity areas nearest to Fall Creek Dam will likely continue to undergo rapid deposition immediately during and after a streambed drawdown event, similar to patterns observed for WY 2012–18. Some of the sediment entering these off-channel features and margin areas may be temporarily stored, then later remobilized and dispersed farther downstream. But if newly deposited sediment persists through the following spring, there is a greater likelihood that local vegetation will establish, reinforce deposited material, and trap sediment during later drawdowns. The reach-scale geomorphic changes may become more apparent if (1) streambed drawdowns continued for several decades, and geomorphic changes were measured at decadal scales or (2) the amount of sediment introduced to downstream reaches substantially increased and (or) sediment transport capacity decreased. The continued streamflow regulation of Fall Creek Dam after sediment releases provides an opportunity to strategically manage streamflows during and after the streambed drawdowns to minimize downstream sediment impacts and ensure other operational thresholds are satisfied. This study provides a comprehensive foundation of datasets and geomorphic analyses to inform dam operations at Fall Creek Lake, monitor sediment transport downstream, and consider operational schemes for future drawdowns. The datasets from this study also provide baselines of sediment transport and geomorphic conditions to assess future changes in reservoir and downstream environments. Future monitoring could be tailored to address specific questions regarding the long-term geomorphic effects of streambed drawdowns on fluvial habitats, flood hazards, cultural resources, or downstream water quality. Future monitoring activities could focus on the relevant geomorphic processes and spatial domains within the three categories used for this study: (1) reservoir erosion and net sediment evacuation, (2) sediment delivery to downstream reaches, including magnitude and temporal pattern of sediment transport, and (3) geomorphic responses of downstream reaches to sediment delivery. Specifically, high priority future monitoring activities could include: Repeat topographic or photographic surveys in the reservoir to characterize changes occurring within individual drawdowns, to quantify sediment export, to determine temporal changes in reservoir storage, and to identify locations of erosion and deposition. Continuous, year-round turbidity monitoring supplemented with suspended-sediment measurements at a streamflow-gaging station immediately downstream from the dam to quantify sediment export. Repeat geomorphic monitoring, mapping, or modeling in downstream reaches to track changes in channel and over bank features using a combination of site- and reach-scale monitoring approaches. This could support assessments of sediment deposition and ensuing vegetation encroachment on flood hazards and habitats and examine how sediment transport and depositional processes may be affected by different sediment supply, streamflow, or dam management scenarios.

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Timing and source of recharge to the Columbia River Basalt groundwater system in northeastern Oregon

Recharge to and flow within the Columbia River Basalt Group (CRBG) groundwater flow system of northeastern Oregon were characterized using isotopic, gas, and age-tracer samples from wells completed in basalt, springs, and stream base flow. Most groundwater samples were late-Pleistocene to early-Holocene; median age of well samples was 11,100 years. The relation between mean groundwater age and completed well depth across the eastern portion of the study area was similar despite differences in precipitation, topographic position, incision, thickness of the sedimentary overburden, and CRBG geologic unit. However, the lateral continuity in groundwater age was disrupted across large regional fault zones indicating these structures are substantial impediments to groundwater flow from the high-precipitation uplands to adjacent lower-precipitation and lower-elevation portions of the study area. Recharge rates calculated from the age-depth relations were <3 mm/yr and independent of the modern precipitation gradient across the study area. The age-constrained recharge rates to the CRBG groundwater system are considerably smaller than previously published estimates and highlight the uncertainty of prevailing models used to estimate recharge to the CRBG groundwater system across the Columbia Plateau in Oregon and Washington. Age tracer and isotopic evidence indicate recharge to the CRBG groundwater system is an exceedingly slow and localized process.

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Relation between the relative abundance and collapse of Aphanizomenon flos-aquae and microbial antagonism in Upper Klamath Lake, Oregon

Aphanizomenon flos-aquae (AFA) is the dominant filamentous cyanobacterium that develops into blooms in Upper Klamath Lake, Oregon each year. During AFA bloom and collapse, ecosystem conditions for endangered Lost River and shortnose suckers deteriorate, thus motivating the need to identify processes that limit AFA abundance and decline. Here we investigate the relations between AFA and other members of the microbial community (photosynthetic and non-photosynthetic bacteria and archaea), how those relations impact abundance and collapse of AFA, and the types of microbial conditions that suppress AFA. We found significant spatial variation in AFA relative abundance during the 2016 bloom period using 16S rRNA sequencing. The Pelican Marina (PM) site had the lowest AFA relative abundance, and this was coincident with increased relative abundance of Candidatus Sericytochromatia , Flavobacterium , and Rheinheimera , some of which are known AFA antagonists. The AFA collapse coincided with phosphorus limitation relative to nitrogen and the increased relative abundance of Cyanobium and Candidatus Sericytochromatia, which outcompete AFA when dissolved inorganic nitrogen is available. The data collected in this study indicate the importance of dissolved inorganic nitrogen combined with microbial community structure in suppressing AFA abundance.

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Groundwater model of the Harney Basin, southeastern Oregon

Groundwater development, mainly for large-scale irrigation, has increased substantially in the Harney Basin of southeastern Oregon since 2010. Concurrently, some areas of the basin experienced groundwater-level declines of more than 100 feet, and some shallow wells have gone dry. The Oregon Water Resources Department has limited new groundwater development in the basin until an improved understanding of the groundwater-flow system is available. The groundwater resources report by Gingerich and others (2022, U.S. Geological Survey Scientific Investigations Report 2021–5103, https://doi.org/10.3133/sir20215103 ) provides that understanding. This report describes the development of a numerical groundwater-flow model that can be used as a tool to help improve that understanding. The Harney Basin Groundwater Model was developed using the finite-difference groundwater-modeling software U.S. Geological Survey modular finite-difference groundwater-flow model (MODFLOW 6) and associated Python pre- and post-processing routines. The groundwater model encompasses the entire 5,240-square-mile Harney Basin and adjacent areas and is calibrated to the hydrologic conditions from 1930 to 2018. The model has a uniform grid consisting of 78,064 nearly square cells, each covering 2,005 by 2,007 feet (about 92 acres) and has 10 layers (780,640 total cells) representing the vertical distribution of hydrogeologic units. The results from the calibrated model simulations indicate that groundwater pumpage exceeded recharge since about the mid-1980s, resulting in an estimated net cumulative depletion of groundwater storage (discharge minus recharge) of about 840,000 acre-feet and also indicated declines in groundwater evapotranspiration and spring and stream discharge. Model simulations show as much as 100 feet of groundwater-level decline in some areas and more than 40 feet of decline in widespread areas in recent decades. Model simulations are consistent with field observations of groundwater levels through time.

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A far-traveled basalt lava flow in north-central Oregon, USA

Widely separated basalt lava-flow outcrops in north-central Oregon, USA, expose products of a single eruptive episode. A Pliocene lava flow, here informally termed the Tetherow basalt, issued from vents near Redmond, in the Deschutes basin of Oregon, as a plains-forming basalt now exposed in continuous outcrops northward for 60 km. A similar basalt crops out 47 km farther north, near Maupin, within what was then a slightly incised ancestral Deschutes River canyon. The northernmost outcrops of this lava flow lie on Fulton Ridge, in the Dalles basin, near the confluence of the Deschutes and Columbia Rivers. Complementary lines of evidence confirm these rocks are all from the same volcanic eruption. Outcrops in the Deschutes and Dalles basins are chemically similar high-titanium basalts, petrographically similar to each other and distinct from other lava flows in the area. Paleomagnetic directions from 11 scattered sites are similar and indistinguishable by various tests for a common mean. Three new 40 Ar/ 39 Ar ages indicate the Tetherow basalt eruption occurred between 5.5 Ma and 5.0 Ma, likely at ca. 5.2 Ma. The widely separated outcrops of this lava flow span 160–180 km along the ancestral Deschutes River and downstream Columbia River. The lava flow’s length and erupted volume of 15–20 km 3 are extraordinarily large in a non-flood-basalt setting. This lava flow provides a datum with which to describe regional physiographic history, assess incision rates, and infer tectonic history. Spanning different depositional basins, the Tetherow basalt is a useful chronologic and stratigraphic marker bed.

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Water-level change from a multiple-well aquifer test in volcanic rocks, Umatilla Indian Reservation near Mission, northeastern Oregon, 2016

The U.S. Geological Survey, in cooperation with the Confederated Tribes of the Umatilla Indian Reservation (CTUIR), (1) estimated water-level change from a multiple-well aquifer test centered on CTUIR well number 422 and (2) evaluated hydraulic connections between the pumping and observation wells on the Umatilla Indian Reservation near Mission, northeastern Oregon to improve the understanding of aquifer characteristics and hydrologic flow boundaries. Water-level changes, or pumping responses, were determined by distinguishing the pumping signal from environmental fluctuations in groundwater levels using analytical water-level models. The pumping well produces water from basalt units from a depth of 450 to 1,057 feet below land surface and was intermittently pumped during February 1–April 18, 2016. Water-level responses to pumping were estimated in the pumping well and in seven observation wells within 4 miles (mi) of the pumping well. The observation wells are open to basalt and some observation wells are either separated from the pumping well by faults and other structural features, within structural zones, or adjacent to structural features. Pumping responses at the observation wells were classified as detected in two wells, ambiguous in one well, and not detected in four wells. Observation-well open-interval elevations overlapped with the pumping-well open interval in both wells with detected pumping responses. Observation wells with detections are 1.8 mi east of the pumping well and across a fault, and 1.4 mi south of the pumping well. The pumping response was classified as ambiguous in an observation well located 1.4 mi west of the pumping well, where the dip of the basalt unit steepens, and adjacent to the Agency syncline. Pumping responses were not detected in observation wells within 0.3 mi of the pumping well where observation-well open-interval elevations are above the top of the pumping well open interval. Analysis of pumping responses indicates (1) a more permeable zone of basalt is adjacent to the lower portion of the pumping-well open interval and extends eastward, (2) basalt adjacent to the upper portion of the pumping-well open-interval is less permeable than the lower portion or separated from the lower portion by a less permeable zone, and (or) (3) a less permeable zone limits vertical hydraulic connectivity between the pumping well and the overlying basalt.

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Complex landslide patterns explained by local intra-unit variability of stratigraphy and structure: Case study in the Tyee Formation, Oregon, USA

Lithology and geologic structure are important controls on landslide susceptibility and are incorporated into many regional landslide hazard models. Typically, metrics for mapped geologic units are used as model input variables and a single set of values for material strength are assumed, regardless of spatial heterogeneities that may exist within a map unit. Here we describe how differences in bedding thickness, grain size, inferred uniaxial compressive strength, and bedding dip control the inherent susceptibility of slopes to deep-seated failure within a single mapped geologic unit - the Tyee Formation of Oregon, USA. The Tyee, which covers over 15,000 km2 and underlies much of the Oregon Coast Range, comprises gently folded alternating beds of sandstone and siltstone deposited as turbidites, forming a 2-km thick Eocene submarine fan which has been uplifted and exhumed through the Cenozoic. Deep-seated landslides are widespread in the Tyee, but form a complex spatial pattern such that landslide density ranges from 0 to 24% of the total landscape area. These slides are often extensive and sufficiently deep to reduce local hillslope gradients, resulting in a strong negative correlation between landslide density and mean local slope. Mean annual precipitation and predicted strong ground motions from Cascadia earthquake scenarios also fail to explain the spatial distribution of deep-seated landslides. Consequently, landslide stability models, which are strongly influenced by landscape slope, pore-water pressure, and seismic acceleration, yield landslide susceptibility maps which are broadly anti-correlated with mapped deep-seated landslide density. Through a multivariable linear regression model, we show that much of the variance in deep-seated landslide density can be explained by variability of intra-unit stratigraphic and structural characteristics, which we measure at 128 sites across two study areas totaling ∼3000 km2. Our results suggest bedding dip is only weakly correlated to landslide density, but strongly influences landslide failure style. Subtle increases in bedding dip, even in the gently folded Tyee Formation, result in a substantially higher likelihood of a landslide being cataclinal, or parallel to bedding. Overall, we find a slight majority of landslides fail within these cataclinal slopes, and that these landslides tend to be larger than non-cataclinal landslides. We also show that the lithological and structural properties that influence landslide susceptibility are distinct for these two populations of landslides. Our results demonstrate how localized, intra-unit, geologic variability can exert strong control on landslide susceptibility and failure style. This suggests that in some locations, landslide hazard models could be significantly improved by incorporating detailed, spatially variable, geologic properties rather than relying solely on generalized geologic map units.

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Target and suspect per- and polyfluoroalkyl substances in fish from an AFFF-impacted waterway

A major source of toxic per - and polyfluoroalkyl substances (PFAS) is aqueous film-forming foams (AFFF) used in firefighting and training at airports and military installations, however, PFAS have many additional sources in consumer products and industrial processes. A field study was conducted on fish tissues from three reaches of the Columbia Slough, located near Portland International Airport, OR, that are affected by AFFF and other PFAS sources. Fishes including largescale sucker ( Catostomus macrocheilus ), goldfish ( Carassius auratus ), and largemouth bass ( Micropterus salmoides ) were collected in 2019 and 2020. Fish blood, liver, and fillet (muscle) were analyzed for target and suspect PFAS by liquid chromatography high resolution mass spectrometry (LC-HRMS). Data were analyzed for patterns by fish species, tissue type, and river reach. Thirty-three out of 50 target PFAS and additional suspect compounds were detected at least once during the study, at concentrations up to 856 ng/g. Seven carboxylic acids (PFOA, PFNA, PFDA, PFUdA, PFDoA, PFTrDA, PFTeDA), three sulfonates (PFHxS, PFOS, PFDS), three electrofluorination-based compounds (FBSA, FHxSA, FOSA), and two fluorotelomer-based compounds (8:2 FTS, 10:2 FTS) were the most frequently detected compounds in all tissue types. The C6 (PFHxS) to C10 (PFDS) homologs were detected with PFOS and FHxSA at concentrations 1–3 orders of magnitude greater than the other PFAS detected. This is the first report of Cl-PFOS, FPeSA, and FHpSA detected in fish tissue. In all fish samples, fillet concentrations of PFAS were the lowest, followed by liver, and blood concentrations of PFAS were the highest. Differences in PFAS concentrations were driven primarily by tissue types and to a lesser extent fish species, but weakly by river reach. The Oregon Health Authority modified an existing fish consumption advisory on the Columbia Slough to recommend no whole-body consumption of most fish to avoid elevated levels of PFOS in fish liver. Measured PFAS concentrations in fish tissues indicate the potential for adverse ecological effects.

Oregon↗

Quantifying uncertainty when extrapolating the relationship between snorkel counts and mark-recapture estimates of juvenile salmonids

Snorkel surveys are frequently used to monitor stream-dwelling fish. Inferring local abundance from snorkel surveys is complicated by two primary factors: variable fish detection probabilities and the relative abundance of fish in habitat types below the recommended minimum depth for snorkeling. We examine these factors across three salmonid species ( Oncorhynchus spp . ), 4 years, and 113 location-years in Oregon coastal streams. We calibrate snorkel counts to mark-recapture estimates and develop mathematically explicit expressions that convert a new snorkel count into a probability density of abundance for streams containing mixed habitat types that were and were not snorkeled. Snorkelers detected 63%, 47%, and 39% of juvenile coho salmon ( Oncorhynchus kitsutch ), steelhead trout ( Oncorhynchus mykiss ), and cutthroat trout ( Oncorhynchus clarkii clarkia ) estimated by mark-recapture, respectively, but uncertainty within and among sampling units was high. Further, analytics developed here can be used to infer abundance and uncertainty for habitat types that were not snorkeled. Our quantification of uncertainty arising from using snorkel counts as a proxy for abundance will help managers balance biological risks with available resources.

Oregon↗

Documenting historical anchorworm parasitism of introduced warmwater fishes in the Willamette River Basin, Oregon

Anchorworms ( Lernaea spp.) are freshwater parasitic copepods that use a wide range of hosts. Yet little is known about their prevalence, distribution, and which species are their primary fish hosts in the state of Oregon. Institutional fish collections serve as banks which allow investigators to look at historical fish specimens and ascertain their health status at the time of their collection. We examined 1,039 specimens collected between 1941 and 2016 from the Oregon State Ichthyology Collection to detect the presence of anchorworms on non-native warmwater fishes from the Willamette River Basin, Oregon. Adult female anchorworms were found on 11 of the 17 fish species that we examined. The most infected species included common carp ( Cyprinus carpio ), bluegill ( Lepomis macrochirus ), and smallmouth bass ( Micropterus dolomieu ). We suggest these introduced warmwater fishes can act not only as hosts, but also as potential reservoirs for these under-studied parasites posing a potential risk for Endangered Species Act (ESA)-listed native fishes. Our findings reveal unique insights that will serve as a baseline to detect future changes in parasite loads in the Willamette River Basin.

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Response of corvid nest predators to thinning: implications for balancing short- and long-term goals for restoration of forest habitat

Forest thinning on public lands in the Pacific Northwest USA is an important tool for restoring diversity in forest stands with a legacy of simplified structure from decades of intensive management for timber production. A primary application of thinning in young (< 50-year-old) stands is to accelerate forest development to mitigate loss of late-seral habitat to decades of logging. However, thinning may have short-term negative effects for some species associated with mature forest that are expected to benefit from the practice over the long term. An increased risk of nest predation is a primary concern to managers charged with stewardship of habitat for the federally threatened Marbled Murrelet ( Brachyramphus marmoratus ), a species that nests in older forests. Predation by corvids is the greatest cause of nest failure for the Marbled Murrelet, and corvids are known to respond positively to forest disturbance, but quantitative information is lacking on the potential impacts of thinning on risk of nest predation. We investigated the response of two common corvid nest predators, Steller’s Jay ( Cyanocitta stelleri ) and Canada Jay ( Perisoreus canadensis ), to variation in thinning intensity in young forest (< 50 years old) using data from a long-term silviculture experiment. We used a Before-After-Control-Impact (BACI) design, linear mixed modeling, and occupancy modeling to quantify differences in corvid observation rates among varying levels of thinning intensity, and to assess changes in jay response over more than a decade following thinning. We found an increase in observation rates of both species in the heavily thinned treatment during the first 5 to 7 years following thinning, and some evidence of a short-term increase in Steller’s Jay activity in the thinning-with-gaps treatment. Neither jay species responded to the least intensive thinning treatment, which reduced average canopy cover by < 30%. By approximately a decade after thinning, observation rates of jays did not differ between unthinned controls and any of the thinning treatments. Incorporating our quantitative information into landscape-level planning can help managers balance short- and long-term conservation goals.

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Abundance of Long-billed Curlews on military lands in the Columbia Basin

Long-billed Curlews ( Numenius americanus ) are declining throughout North America, and the loss of grassland breeding habitat is one of the primary threats to the species. Intermountain West, in particular, has been identified as the most important region in North America for breeding curlews. Nevertheless, the density and abundance of Long-billed Curlews in this region is not well understood. Lands managed for military training can provide habitat for wildlife species of conservation concern, and increasingly these lands are becoming relevant to sustaining biodiversity. We conducted point count surveys of Long-billed Curlews on Department of Defense lands in the Columbia Basin near Boardman, Oregon, USA during two consecutive breeding seasons. We used multinomial-Poisson mixture models to estimate detection probability and density of curlews and to investigate environmental correlates of those metrics. Mean detection probability at a distance of 400 m was 0.45 and 0.61 in 2015 and 2016, respectively. In 2015, the clarity of skies increased detection probability, but in 2016, none of the variables we measured influenced detection probability. Mean predicted density was 3.3 (95% confidence interval: 2.4–4.7) and 1.8 (1.2–2.7) curlews/km² in 2015 and 2016, respectively. In both years, curlew density was higher in lower-elevation or topographically smoother areas. Estimated abundance of curlews in the study area was 639 (456–912) and 350 (237–520) birds in 2015 and 2016, respectively. The number of curlews appeared to fluctuate across the two years of our study, a demographic trend that may have been influenced by a wildfire in our study area in June 2015. The results of our study indicate that federal grasslands, including areas where military operations are conducted, can provide conservation benefit to breeding Long-billed Curlews.

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Restoring Pacific Lamprey in the Umpqua River Basin of Oregon: A workshop summary

The Umpqua River Basin in southwestern Oregon (Figure 1) is part of the lands inhabited by the Cow Creek Band of Umpqua Tribe of Indians and an area of active co-management authority. This Basin supports a unique fish fauna, including important populations of Pacific salmon ( Oncorhynchus spp.) and steelhead ( O. mykiss ), and other native fishes that are endemic to the region (Mims et al. 2018). Among these species, the Pacific Lamprey ( Entosphenus tridentatus ) is one of the most unique, representing an ancient lineage of jawless fishes that long predates the evolution of any other species of fish in the basin (Clemens et al. 2017, 2021a). The Pacific Lamprey also represents an important cultural and food resource that features prominently in the indigenous practices of the Cow Creek Band of Umpqua Tribe of Indians. This report provides a select summary of topics related to the conservation of Pacific Lamprey in the Umpqua River Basin. Many of the topics addressed herein were discussed in a workshop co-hosted by the Cow Creek Band of Umpqua Tribe of Indians and the U.S. Geological Survey in April of 2022. This workshop was focused on threats to Pacific Lamprey in fresh waters of the basin. The workshop highlighted science conducted over the past 15 years by local managers and researchers to understand and address these threats and provide new information relevant to the conservation and restoration of Pacific Lamprey. Attendees included staff from the Coquille Indian Tribe, Yakama Nation, Columbia River Inter-Tribal Fish Commission, Partnership for Umpqua Rivers, Rogue River Watershed Council, Curry Watersheds Council, PacifiCorp, Trout Unlimited, Jackson Soil and Water Conservation District, Oregon Department of Fish and Wildlife, Bureau of Land Management, U.S. Fish and Wildlife Service, and U.S. Forest Service. This report provides an overview of this workshop and recent science and provides an overview of potential future efforts that could inform restoration of Pacific Lamprey. This summary is organized into four sections that relate to the main topics of the workshop: 1) The physical habitat template (stream flow, instream wood, sediment, and water temperature), 2) movement barriers and reservoirs, 3) biological invasions, and 4) climate adaptation. These do not represent an exhaustive list of topics related to conservation of Pacific Lamprey in the Umpqua Basin.

Oregon↗

Characterizing structure in southern Summer Lake valley, Oregon using ground- and sUAS-based potential field geophysics

Summer Lake is located in south-central Oregon at the extreme northwestern extent of the Basin and Range Province, bordered by the Cascade Volcanic Province to the west and the High Lava Plains to the north. The valley hosts numerous hot springs and a small geothermal powerplant at the southeastern end of the valley in the town of Paisley. This tectonically active region has undergone significant ENE-directed extension producing highly faulted terrain with fault blocks tilting on average 60° from the maximum extension direction. Local geology consists of young volcanics which have been extensively dissected by predominantly NNW-trending normal faults. These same structures likely extend through the basin but are concealed by young basin fill sediments and volcanics. As a result, potential field geophysical methods are ideally suited for characterizing subsurface geology and structures in this region which are important for understanding basin evolution and tectonics within the valley. New ground-based gravity and magnetic data, as well as sUAS- (small uncrewed aerial systems) based magnetic data reveal a prevalent NNW-trending fabric beneath the basin fill in southern Summer Lake valley that likely plays an important role in controlling the flow of subsurface hydrothermal fluids. Additionally, measurements were performed on outcrops, hand samples and paleomagnetic cores to constrain the physical properties (density, magnetic susceptibility and magnetic remanence) of local geology. Together, these data help resolve basin geometry and delineate concealed faults and contacts, informing our understanding of the structural framework and geothermal resource potential of southern Summer Lake valley.

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Influence of a guide net on the presence and behavior of fish near the selective water withdrawal structure in Lake Billy Chinook, Oregon, 2022

Imaging sonar was used to assess the influence of a fish guidance net, installed at the entrances to the selective water withdrawal (SWW) intake structure, in the forebay of Round Butte Dam, Oregon, on behavior, abundance, and timing of fish during the spring of 2022. The purposes of the SWW are (1) to direct surface currents in the forebay to attract and collect downriver migrating juvenile salmonid smolts (Chinook salmon [ Oncorhynchus tshawytscha ], sockeye salmon [ O. nerka ], and steelhead [ O. mykiss ]) from Lake Billy Chinook and (2) to enable operators of the SWW to withdraw water from surface and benthic elevations in the reservoir to manage downriver water temperatures. Part of the evaluation to determine how well the structure performs at collecting juvenile salmonids is (1) to regularly assess how fish are approaching the entrance, and (2) determine if operational flows and the installation of a guidance (lead) net near the SWW structure entrance can be optimized to increase the attraction of smolts present in the forebay of Lake Billy Chinook. The goal of this study was to provide data about the effects of the installation of a lead net on the movements and behaviors of juvenile salmonids near the entrance to the SWW to help inform decisions to improve downstream passage solutions. Two imaging sonar units were deployed during the spring 2022 smolt out-migration period. One unit monitored fish movements near the south entrance and one unit monitored movements near the north entrance of the SWW, with the lead net between the two entrances. Both smolt and bull trout ( Salvelinus confluentus )-size fish were regularly observed near the entrances, with greater abundances observed at night, corresponding with greater discharge through the SWW, as opposed to during the day when discharge was reduced. Smolt-size fish groups were primarily observed near the interior halves of each SWW entrance, and greater abundances of fish were observed at the south entrance. Increased counts of bull trout-size fish coincided with the increased abundances of smolt-size fish. Overall, the results indicate that (1) smolt-size fish were more abundant near the entrance of the SWW during periods of increased discharge, (2) bull trout-size fish were present at the SWW, and (3) a greater percentage of smolt-size fish were observed directed toward the entrances of the SWW during periods of increased discharge. The addition of the lead net may assist in orienting fish toward the entrances to the SWW.

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Co-production of models to evaluate conservation alternatives for a threatened fish in a rapidly changing landscape

Reintroductions are one means of managing species distributions, but the feasibility of such efforts is uncertain. Here we consider reintroduction for threatened bull trout ( Salvelinus confluentus ) that currently occupy a small fraction of historically occupied habitats in the upper Klamath River basin owing to climate warming and human modifications of ecosystems. We engaged stakeholders across multiple organizations to co-produce a decision support model that estimated the potential of reintroduction to establish new populations and persistence of donor populations. Stakeholders identified recipient and donor populations, strategy (e.g., artificial propagation, translocation), number of individuals, and life stage of bull trout. The most optimal decision for reintroduction was artificial propagation of 10,000 fry into Annie Creek. This strategy may have negative consequences on donor populations, with the exception of Sun Creek, which was resilient to simulated removal of bull trout. Donor populations and recipient streams identified as most feasible were generally consistent across all of these scenarios. During model development, however, an unexpected and intense wildfire affected half of the streams considered and may have dramatically impacted donor populations. With models in hand from the initial feasibility assessment, we adapted them to further evaluate the potential of supplementation following this massive disturbance. Overall, results of this study indicate the value of developing co-produced tools that can be rapidly adapted to evaluate the consequences of whole-system transformations in near-real-time assessments.

Oregon↗