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Marinna A. Martini

Publications and source records attributed to Marinna A. Martini.

34 records · Page 2Linked to original sources

Processes influencing the transport and fate of contaminated sediments in the coastal ocean– Boston Harbor and Massachusetts Bay

Most of the major urban centers of the United States including Boston, New York, Washington, Chicago, New Orleans, Miami, Los Angeles, San Francisco, and Seattle—are on a coast (fig. 1.1). All of these cities discharge treated sewage effluent into adjacent waters. In 2000, 74 percent of the U.S. population lived within 200 kilometers (km) of the coast. Between 1980 and 2002, the population density in coastal communities increased approximately 4.5 times faster than in noncoastal areas of the U.S. (Perkins, 2004). More people generate larger volumes of wastes, increase the demands on wastewater treatment, expand the area of impervious land surfaces, and use more vehicles that contribute contaminants to street runoff. According to the National Coastal Condition Report II (U.S. Environmental Protection Agency, 2005a), on the basis of coastal habitat, water and sediment quality, benthic index, and fish tissue, the overall national coastal condition is only poor to fair and the overall coastal condition in the highly populated Northeast is poor. Scientific information helps managers to prioritize and regulate coastal-ocean uses that include recreation, commercial fishing, transportation, waste disposal, and critical habitat for marine organisms. These uses are often in conflict with each other and with environmental concerns. Developing a strategy for managing competing uses while maintaining sustainability of coastal resources requires scientific understanding of how the coastal ocean system behaves and how it responds to anthropogenic influences. This report provides a summary of a multidisciplinary research program designed to improve our understanding of the transport and fate of contaminants in Massachusetts coastal waters. Massachusetts Bay and Boston Harbor have been a focus of U.S. Geological Survey (USGS) research because they provide a diverse geographic setting for developing a scientific understanding of the geology, geochemistry, and oceanography of coastal systems in general. Scientific data from this region can also be used to inform decisions about important economic, environmental, and political issues. From the economic viewpoint, the annual value of tourism and shipping in Massachusetts and Cape Cod Bays is about $1.5 billion and $1.9 billion, respectively. Commercial and recreational fishing generates about $240 million per year in the same region (U.S. Environmental Protection Agency, 2005b). The environmental issue is the 300-year history of waste discharge from the Boston metropolitan area into the harbor. This history is punctuated by cycles of environmental degradation, public outcry, and improvements in the sewage treatment system. With each improvement, however, the continuous growth of population in greater Boston (fig. 1.2) and the resulting increase in the volume of waste exceeded the capacity of the treatment system, thereby setting the stage for a new contamination crisis. By the 1980s, the levels of contaminants in sediments of Boston Harbor were among the highest in the nation (National Oceanic and Atmospheric Administration, 1987). Fish were diseased, shellfish beds were closed, and swimming beaches were unsafe after heavy rains; in general, water quality and aesthetics were below acceptable standards. Legal and political issues have always been part of Boston Harbor’s history. The environmental conditions in the 1980s were highlighted in a 1983 legal suit brought by the city of Quincy against the Metropolitan District Commission (MDC, the state agency responsible for sewage treatment) and heads of three state agencies for discharging untreated or poorly treated sewage into the harbor (Dolin, 2004). The suit never went to trial, but through the actions of a Massachusetts Superior Court, the issue of Boston Harbor contamination remained on the political and public agenda. The judge called the harbor “unsafe, unsanitary, indecent, in violation of the law (Clean Water Act), and a danger to the health and welfare of the people” (Forman, 1984). To force the state legislature to implement a plan to improve harbor conditions, the judge threatened to place the MDC in receivership and curtail new sewage hookups for industry. Under intense lobbying by business, the legislature created the Massachusetts Water Resources Authority (MWRA) in December 1984. The independent MWRA was established to manage Boston’s waste treatment system and was given the authority to float bonds to pay for major improvements in the treatment system. In 1985, a Federal court began hearings on a suit brought by the Conservation Law Foundation, the Environmental Protection Agency (USEPA), and towns of Quincy and Winthrop against the MDC and MWRA (as heir to responsibilities of the MDC) for years of violation of the Clean Water Act. The judge ruled against the defendants and required all the parties to submit a construction plan and schedule for a new sewage treatment system. From these submissions, he developed a schedule for treatment system upgrades that would give the “citizens of this commonwealth a public assurance that Boston Harbor will be cleaned up within a defined period of time” (Dolin, 2004). The MWRA’s Boston Harbor cleanup program (Levy and Connor, 1992) has transformed the Boston sewage system. Key improvements were to (1) reduce contaminants at the industrial source; (2) remediate leaks in the sewage-collection system; (3) eliminate sewage sludge discharge to the harbor; (4) upgrade sewage treatment from primary to secondary; (5) construct a new ocean outfall 15.2 km offshore in Massachusetts Bay for discharge of treated effluent (fig. 1.3); and (6) implement improvements in the combined-sewer-overflow system. As part of the harbor cleanup program, the MWRA developed a comprehensive monitoring program (summarized in MWRA, 2004) to assess changes in the harbor and bays that specifically related to the new sewage system. Additional information about conditions and processes in the coastal system on a regional scale and over a long time period was and continues to be important in predicting and interpreting local change. Implementation of the MWRA’s program and the mission of the USGS to understand the geology of the nation’s offshore waters provided an opportunity to conduct a cooperative multidisciplinary research program. This USGS program addresses basic scientific questions as well as concerns raised by management regarding the design, implementation, and assessment of the new sewage treatment system. Already active in Boston Harbor during the late 1970s, the USGS expanded research into Massachusetts Bay with a multidisciplinary program in 1989.

Massachusetts↗

South Carolina Coastal Erosion Study: Data report for observations, October 2003 - April 2004

Oceanographic observations have been made at nine locations in Long Bay, South Carolina from October 2003 through April 2004. These sites are centered around a shore-oblique sand feature that is approximately 10 km long, 2 km wide, and in excess of 3 m thick. The observations were collected through a collaborative effort with the U.S. Geological Survey, the University of South Carolina, and Georgia Institute of Technology Savannah Campus as part of a larger study to understand the physical processes that control the transport of sediments in Long Bay.

South Carolina↗

Hydratools manual version 1.0, documentation for a MATLAB ® -based post-processing package for the Sontek Hydra

The Sediment Transport Instrumentation Group (STG) at the U.S. Geological Survey (USGS) Woods Hole Science Center has a long-standing comitment to providing scientists with high quality oceanographic data. To meet this commitment, STG personnel are vigilant in checking data as well as hardware for signs of instrument malfunction. STG data sets are accompanied by processing histories to detail data processing procedures that may have modified the natural data signal while removing noise from the data. The history also allows the data to be reprocessed in the ligth of new insight into instrument function and moored conditions. This toolbox was compiled to meet these data quality commitments for data generated by Sontek Hydra systems using both ADV and PCADP probes. In the mid 1900's, the USGS Coastal and Marine Program began frequent deployments of Sontek Hydra systems in support of projects in estuaries, coastal, and continental shelf regions nationwide. Hydra data sets are large and complex in structure, and existing processing and editing tools consisted of fragments of MATLAB code written by USGS scientists to satisfy personal research needs. This code did not meet STG quality control criteria. This toolbox permits engineers and scientists to monitor data quality by: 1. processing data with interactive critical review; 2. preserving data quality indicators; 3. preserving minimally processed and partially processed versions of data sets. STG usually deploys ADV and PCADP probes configured as downward looking, mounted on bottom tripods, with the objective of measuring high-resolution near-bed currents. The velocity profiles are recorded with minimal internal data processing. Also recorded are parameters such as temperature, conductivity, optical backscatter, light transmission, and high frequency pressure. Sampling consists of high-frequency bursts(1–10 Hz) bursts of long duration (5–30 minutes) at regular and recurring intervals for a duration of 1 to 6 months. The result is very large data files, often 500 MB per Hydra, per deployment, in Sontek's compressed binary format. This section introduces the Hydratools toolbox and provides information about the history of the system's development. The USGS philosophy regarding data quality is discussed to provide an understating of the motivation for creating the system. General information about the following topics will also be discussed: hardware and software required for the system, basic processing steps, limitations of program usage, and features that are unique to the programs.

Open-File Report↗

Wave data processing toolbox manual

Researchers routinely deploy oceanographic equipment in estuaries, coastal nearshore environments, and shelf settings. These deployments usually include tripod-mounted instruments to measure a suite of physical parameters such as currents, waves, and pressure. Instruments such as the RD Instruments Acoustic Doppler Current Profiler (ADCP(tm)), the Sontek Argonaut, and the Nortek Aquadopp(tm) Profiler (AP) can measure these parameters. The data from these instruments must be processed using proprietary software unique to each instrument to convert measurements to real physical values. These processed files are then available for dissemination and scientific evaluation. For example, the proprietary processing program used to process data from the RD Instruments ADCP for wave information is called WavesMon. Depending on the length of the deployment, WavesMon will typically produce thousands of processed data files. These files are difficult to archive and further analysis of the data becomes cumbersome. More imperative is that these files alone do not include sufficient information pertinent to that deployment (metadata), which could hinder future scientific interpretation. This open-file report describes a toolbox developed to compile, archive, and disseminate the processed wave measurement data from an RD Instruments ADCP, a Sontek Argonaut, or a Nortek AP. This toolbox will be referred to as the Wave Data Processing Toolbox. The Wave Data Processing Toolbox congregates the processed files output from the proprietary software into two NetCDF files: one file contains the statistics of the burst data and the other file contains the raw burst data (additional details described below). One important advantage of this toolbox is that it converts the data into NetCDF format. Data in NetCDF format is easy to disseminate, is portable to any computer platform, and is viewable with public-domain freely-available software. Another important advantage is that a metadata structure is embedded with the data to document pertinent information regarding the deployment and the parameters used to process the data. Using this format ensures that the relevant information about how the data was collected and converted to physical units is maintained with the actual data. EPIC-standard variable names have been utilized where appropriate. These standards, developed by the NOAA Pacific Marine Environmental Laboratory (PMEL) (http://www.pmel.noaa.gov/epic/), provide a universal vernacular allowing researchers to share data without translation.

Open-File Report↗

Long-Term Oceanographic Observations in Western Massachusetts Bay Offshore of Boston, Massachusetts: Data Report for 1989-2002

This data report presents long-term oceanographic observations made in western Massachusetts Bay at two locations: (1) 42 deg 22.6' N., 70 deg 47.0' W. (Site A, 33 m water depth) from December 1989 through December 2002 (figure 1), and (2) 42 deg 9.8' N., 70 deg 38.4' W. (Site B, 21 m water depth) from October 1997 through December 2002. Site A is approximately 1 km south of the new ocean outfall that began discharging treated sewage effluent from the Boston metropolitan area into Massachusetts Bay on September 6, 2000. These long-term oceanographic observations have been collected by the U.S. Geological Survey (USGS) in partnership with the Massachusetts Water Resources Authority (MWRA) and with logistical support from the U.S. Coast Guard (USCG - http://www.uscg.mil). This report presents time series data through December 2002, updating a similar report that presented data through December 2000 (Butman and others, 2002). In addition, the Statistics and Mean Flow sections include some new plots and tables and the format of the report has been streamlined by combining yearly figures into single .pdfs. Figure 1 (PDF format) The long-term measurements are planned to continue at least through 2005. The long-term oceanographic observations at Sites A and B are part of a USGS study designed to understand the transport and long-term fate of sediments and associated contaminants in the Massachusetts bays. (See http://woodshole.er.usgs.gov/project-pages/bostonharbor/ and Butman and Bothner, 1997.) The long-term observations document seasonal and inter-annual changes in currents, hydrography, and suspended-matter concentration in western Massachusetts Bay, and the importance of infrequent catastrophic events, such as major storms or hurricanes, in sediment resuspension and transport. They also provide observations for testing numerical models of circulation. This data report presents a description of the field program and instrumentation, an overview of the data through summary plots and statistics, and the data in NetCDF and ASCII format for the period December 1989 through December 2002 for Site A and October 1997 through December 2002 for Site B. The objective of this report is to make the data available in digital form and to provide summary plots and statistics to facilitate browsing of the long-term data set.

Data Series↗

Acoustic Doppler Current Profiler Data Processing System manual [ADCP]

This open-file report describes the data processing software currently in use by the U.S. Geological Survey (USGS), Woods Hole Coastal and Marine Science Center (WHCMSC), to process time series of acoustic Doppler current data obtained by Teledyne RD Instruments Workhorse model ADCPs. The Sediment Transport Instrumentation Group (STG) at the WHCMSC has a long-standing commitment to providing scientists high quality oceanographic data published in a timely manner. To meet this commitment, STG has created this software to aid personnel in processing and reviewing data as well as evaluating hardware for signs of instrument malfunction. The output data format for the data is network Common Data Form (netCDF), which meets USGS publication standards. Typically, ADCP data are recorded in beam coordinates. This conforms to the USGS philosophy to post-process rather than internally process data. By preserving the original data quality indicators as well as the initial data set, data can be evaluated and reprocessed for different types of analyses. Beam coordinate data are desirable for internal and surface wave experiments, for example. All the code in this software package is intended to run using the MATLAB program available from The Mathworks, Inc. As such, it is platform independent and can be adapted by the USGS and others for specialized experiments with non-standard requirements. The software is continuously being updated and revised as improvements are required. The most recent revision may be downloaded from: http://woodshole.er.usgs.gov/operations/stg/Pubs/ADCPtools/adcp_index.htm The USGS makes this software available at the user?s discretion and responsibility.

Open-File Report↗

Field results of antifouling techniques for optical instruments

An anti-fouling technique is developed for the protection of optical instruments from biofouling which leaches a bromide compound into a sample chamber and pumps new water into the chamber prior to measurement. The primary advantage of using bromide is that it is less toxic than the metal-based antifoulants. The drawback of the bromide technique is also discussed.

Conference Paper↗

Extending and expanding the life of older current meters

The EG&G Model 610 VACM and Model 630 VMCM are standards for ocean current measurements. It is simple to add peripheral sensors to the data stream of the VACM by use of add-on CMOS circuitry. The firmware control of the VMCM makes it virtually impossible to add sampling of additional sensors. Most of the electronic components used in the VACM are obsolete or difficult to replace and the VMCM will soon follow suit. As a result, the USGS joined WHOI in the development of a PCMCIA data storage system to replace the cassette recording system in the VACM. Using the same PCMCIA recording package as the controller and recorder for the VMCM, a user-friendly VMCM is being designed. PCMCIA cards are rapidly becoming an industry standard with a wide range of storage capacities. By upgrading the VACM and VMCM to PCMCIA storage systems with a flexible microprocessor, they will continue to be viable instruments.

Conference Paper↗

Instrument packages to study long-term sediment transport processes in a shallow bay

Pressure and near-surface and near-bottom measurements of current, temperature, salinity and light transmission were required in Mobile Bay, a 3 m deep estuary on the Gulf of Mexico. This environment presented several obstacles to obtaining long term observations. Boat traffic, soft estuary bottom, heavy biofouling, rapid sample rates and large data storage were overcome by using instrumentation techniques that are applicable to other estuary systems. Nearly two years of continuous data was collected.

Conference Paper↗

New recording package for VACM provides sensor flexibility

For the past three decades, the VACM has been a standard for ocean current measurements. A VACM is a true vector-averaging instrument that computes north and east current vectors and averages temperature continuously over a specified interval. It keeps a running total of rotor counts, and records one-shot samples of compass, vane position and time. Adding peripheral sensors to the data stream was easy. In today's economy, it seems imperative that operational centers concentrate on upgrading present inventory rather than purchasing newer instruments that often fall short of the flexible measurement platforms with high data capacities required by most researchers today. PCMCIA cards are rapidly becoming an industry standard with a wide range of storage capacities. By upgrading the VACM to a PCMCIA storage system with a flexible microprocessor, the VACM should continue to be a viable instrument into the next century

Conference Paper↗

Antifouling leaching technique for optical lenses

The effectiveness of optical lenses deployed in water less than 100 m deep is significantly reduced by biofouling caused by the settlement of macrofauna, such as barnacles, hydroids, and tunicates. However, machineable porous plastic rings can be used to dispense antifoulant into the water in front of the lens to retard macrofaunal growth without obstructing the light path. Unlike coatings which can degrade the optical performance, antifouling rings do not interfere with the instrument optics. The authors have designed plastic, reusable cup-like antifouling rings to slip over the optical lenses of a transmissometer. These rings have been used for several deployments on shallow moorings in Massachusetts Bay, MA and have increased the time before fouling degrades optical characteristics

Conference Paper↗

A multi-sensor oceanographic measurement system for coastal environments

An instrument system has been developed for long-term sediment transport studies that uses a modular design to combine off the shelf components into a complete and flexible package. A common data storage format is used in each instrument system so that the same hardware can be assembled in different ways to address specific scientific studies with minimal engineering support and modification. Three systems have been constructed and successfully deployed to date in two different coastal environments.

Sea Technology↗

Benthic Acoustic Stress Sensor (BASS): Electronics Check-Out Procedures

Summary The procedures described here are presented so that a technician with limited experience with BASS can perform basic tests which, when executed properly, should be a thorough evaluation of the health of the system. This is not intended as an in depth explanation of how BASS works. Should any significant problems be found, it is suggested that you contact the manufacturer, Oceanographic Instrument Systems, North Falmouth, MA. The Tattletale controller is manufactured by the Onset Computer Corporation, Cataumet, MA.

Open-File Report↗