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USGS2026

Standardized method for logging drill core at the Idaho National Laboratory, Idaho

The U.S. Geological Survey’s (USGS) Lithologic Core Storage Library (CSL) at the Idaho National Laboratory stores more than 120,000 feet of drill core that is accessible to the public for research and sampling. To effectively convey the physical and descriptive properties of the drill core, USGS staff at the Idaho National Laboratory Project Office log the drill core and publish the lithologic logs as data releases. The logs provide essential data on the lithology, texture, mineralogy, alteration, and other physical properties of the core, which serve as valuable information for researchers to guide their research and sampling efforts. To ensure consistent, quality, and dependable lithologic logs, this document outlines the procedures and expectations for logging drill core at the CSL. This document describes the processes for storing, photographing, and logging core, and includes a variety of resources, reference materials, and appendixes designed to standardize and aid the logging process. Following the procedures outlined in this document will produce consistent, detailed logs that facilitate dependable observations and serve as an easy reference for researchers and other interested parties.

Idaho↗
USGS2026

Aspergillosis (Avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining: (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to aspergillosis and applies to all avian species.

Techniques and Methods↗
USGS2025

Examining the compositional selectivity of hydrocarbon oxidation products using liquid–liquid extraction and solid-phase extraction techniques

The effect of extraction methods on detecting hydrocarbon oxidation products (HOPs) in groundwater remains unclear. HOPs are polar, water-soluble byproducts of petroleum biodegradation. Our previous work showed that liquid–liquid extraction (LLE), a method commonly used in regulatory monitoring, has a significantly lower extraction efficiency for HOPs compared to solid-phase extraction (SPE). In this study, we evaluate the analytical limitations and compositional selectivity of LLE and SPE using groundwater samples from the Bemidji, MN, crude oil spill site. Optical properties were characterized using excitation–emission matrix spectroscopy (EEMs), and a three-component PARAFAC model was validated, showing consistent trends across both extracts and whole water samples. Ultrahigh-resolution mass spectrometry (UHR-MS) revealed that LLE selectively recovered aliphatic-like compounds but underrepresented more polar oxygenated HOPs. In contrast, SPE methods were more effective at isolating highly oxidized compound classes. These differences were consistent across a gradient of contamination. Overall, the LLE was less precise and less representative of polar HOPs, introducing bias in the characterization of HOPs. This study is the first to quantitatively demonstrate the compositional selectivity and analytical bias of LLE versus SPE for HOPs using combined EEM-PARAFAC and UHR-MS techniques, with implications for long-term monitoring and site assessment protocols.

Environmental Science and Technology↗
USGS2025

Bayesian mapping of regionally grouped, sparse, univariate earth science data

Some earth science data are naturally grouped by region, and it is often desirable to map these data by region. However, if there are only a few samples within each region, then the map should be smoothed in an appropriate way to mitigate the problems that arise from having only a few samples. A smoothing algorithm based on a Bayesian hierarchical model is developed and presented in this report. This algorithm has several features that make it especially suitable for mapping earth science data: it can account for measurements that are censored, it can process multiple datasets with different measurement errors and different censoring thresholds, and it can calculate the uncertainty in any statistic that is mapped. The algorithm is demonstrated by mapping gold concentrations that are measured in streambed sediments in the Taylor Mountains quadrangle in southwestern Alaska.

Alaska↗
USGS2025

Comparisons of shoreline positions from satellite-derived and traditional field- and remote-sensing techniques

Satellite-derived shorelines (SDS) have the potential to help researchers answer critical coastal science questions and support work to predict coastal change by filling in the spatial and temporal gaps present in current field-based and remote-sensing data collection methods. The U.S. Geological Survey conducted comparison analyses of traditionally sourced shorelines and SDS in diverse coastal landscapes to determine how SDS could be used in ongoing and future work across varied coastal environments and provided some initial findings that could be used for implementation. Using CoastSeg, a browser-based program for SDS detection and mapping, SDS for the period 1984–2023 for multiple locations across the United States were compared to shoreline positions from traditionally sourced shoreline data. In this report, the authors present these comparisons alongside lessons learned and challenges encountered when building SDS workflows in different coastal locations. Results show that individual SDS have larger uncertainty and yet produced similar linear trends to sparser, traditionally sourced shoreline data; because SDS methods provide orders of magnitude more data than traditional shoreline-detection methods, they can be used to evaluate shoreline behaviors. Refining average scalar slopes used in tidal corrections did not result in substantial decreases in uncertainty. Using lessons from this work to outline needs for regional implementation, initial setup time would be considerable, being on the order of weeks. However, once complete, shoreline detections and analyses are fast (on the order of minutes to hours) and achievable using a desktop computer.

Alaska, Florida, Massachusetts, Washington↗
USGS2026

Design and function of the Autonomous Benthic Imaging and Surveying System (ABISS) for remote sensing of lake and seabed environments

Lake and seabed environments are home to fisheries and other biota that are important to ecosystems and economies, yet these environments and the species that use them are difficult to accurately assess and monitor. Traditional benthic survey techniques, like bottom trawling used by the U.S. Geological Survey, are limited by substrate constraints, poor spatial resolution and precision, and operational depth limits, hindering accurate assessment of benthic species and habitats. In response to these limitations, the U.S. Geological Survey developed the Autonomous Benthic Imaging and Surveying System, a camera system integrated into underwater vehicles, to capture high-resolution images of the lakebed. The system uses color and stereo cameras to collect imagery, which can be analyzed using computational methods to detect organisms and (or) characterize habitat features, such as geologic substrate types. The system has been integrated into autonomous underwater vehicles and into an underwater housing used by self-contained underwater breathing apparatus (SCUBA) divers. Although the engineering of the system was motivated by the need for data collection in the Great Lakes, it has potential to collect high quality data in any aqueous setting with sufficient water clarity and safe operating conditions. The Autonomous Benthic Imaging and Surveying System can operate across diverse depths and light conditions to map and quantify ecological patterns that were difficult or impossible to assess using traditional methods. The Autonomous Benthic Imaging and Surveying System offers the potential for accurate and precise monitoring and assessment of native benthic biota, invasive species, and habitat, potentially providing natural resource managers with improved information to support decision making about benthic resource management.

Great Lakes↗
USGS2025

Determination of per- and polyfluoroalkyl substances in water by direct injection of matrix-modified centrifuge supernatant and liquid chromatography/tandem mass spectrometry with isotope dilution

A direct-injection liquid chromatography/tandem mass spectrometry method was developed to determine 34 per- and polyfluoroalkyl substances (PFAS), including selected branched isomers, in centrifuge supernatant of matrix-modified (amended with approximately 50 percent methanol) water samples. The method has been validated in reagent water, surface water, groundwater, and wastewater effluent. Other water types (for example, drinking water, untreated wastewater, and landfill leachate) have been analyzed by the method but not systematically validated. Recovery of isotope-dilution standards, added to each sample, may be used to assess method performance in nonvalidated matrices on a sample-by-sample basis. Using this method, PFAS concentrations were determined in the range of 2–2,000 nanograms per liter in water samples. This range can be extended by diluting concentrated samples. At circumneutral pH, most compounds are present in the environment in their ionized form, and data are reported as such (for example, perfluorooctanoic acid is referred to as “perfluorooctanoate” [PFOA], perfluorooctane sulfonic acid is referred to as “perfluorooctane sulfonate” [PFOS]). Sample preparation procedures were designed without the use of filtration and with minimum sample handling steps to mitigate procedural losses of target compounds due to sorption to surfaces. Further, isotope-dilution quantification allowed for the correction of bias that may result from procedural losses, matrix-induced signal suppression or enhancement, and other factors. Validation experiments to characterize bias and variability, method detection level, and holding time were done in four distinct water matrices—reagent water, surface water, treated wastewater effluent, and groundwater—at multiple concentration levels. Mean PFAS recoveries met data quality objectives of bias and variability studies in all four validation matrices except for two compounds with low and variable recovery in the reagent water matrix only. Isotope-dilution standards, treated as surrogate compounds, were analyzed in more than 1,500 customer-submitted environmental samples with aggregate recovery of 102.5±6.5 percent (mean±standard deviation). Maximum holding times for all target compounds in the four validation matrices were 28 days for refrigerated samples and 90 days for frozen samples.

Techniques and Methods↗
USGS2024

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods↗
USGS2025

3D Converted wave reverse time migration imaging

We describe a newly developed method for recovering high-resolution images of seismic discontinuities, such as subducting slabs, in 3D. Our method makes use of converted S → P or P → S waves observed by dense arrays of seismometers to infer the locations and relative strengths of seismic discontinuities at depth in a target region. Observed direct and converted waves are backpropagated to their times of origin. The time-reversed wavefield is then separated into its constituent P and S components via the Helmholtz decomposition, and those separated wavefields are used to compute imaging functions that characterize the locations and relative strengths of seismic discontinuities. Imaging functions may be designed to use either S → P or P → S waves, so that users can target those arrivals expected to be most dominant in a given dataset. We have previously demonstrated the efficacy of our method in two dimensions, and we now present a 3D implementation of our technique which addresses the significant computational challenges posed by the size of volumetric wavefield data in three dimensions. Through a series of synthetic examples, we demonstrate that our method is capable of recovering the fine scale structure of a subducting slab given realistic station coverage and earthquake sources. We investigate optimal seismic station geometries for our technique and explore image interpretability in regions with poor data coverage. We find that linear station geometries yield more optimal, interpretable imaging functions than collections of small arrays can. We also show that our method can successfully recover bothS → P or P → S images when realistic shear earthquake sources are used, and we explore the additional computational challenges presented by the high frequency content of S waves. Our results demonstrate the potential for our technique to recover high-resolution information about subducting slabs in real-world regions, given that relatively sparse seismic arrays with only approximately 100 stations are capable of recovering interpretable imaging functions from just a few realistic earthquake sources for multiple discontinuities at significant depth in an area of approximately 400~sq~km.

Seismica↗
USGS2026

Computational electromagnetic geophysics for groundwater system studies: A review on established practices and recent advances

Identifying effective solutions for locating groundwater resources and ensuring the quality of drinking water is increasingly urgent, given the challenges posed by climate change and population growth. This review investigates electromagnetic geophysical imaging techniques, in both time- and frequency-domain, that can provide valuable insights for groundwater assessment. We explore computational electromagnetic methods used to evaluate electromagnetic data and several recent hydrogeophysical case studies. As open-source frameworks for modeling electromagnetic geophysical problems become available, a broader range of researchers can interpret their data with computationally advanced software. We provide an overview of documented open-source codes for evaluating electromagnetic data and analyze various hydrological targets in relation to their electromagnetic surveying technique and the computational method applied. Furthermore, we evaluate the potential of advanced computational techniques, including three-dimensional modeling, non-deterministic inversion and machine learning, to couple geophysical with numerical groundwater modeling and apply it in groundwater system studies. Despite obstacles such as complexity and resource demands, our findings indicate that the quantification and integration of predictive uncertainties from both electromagnetic and hydrological data and simulations would significantly improve the reliability of hydrogeophysical models. This can lead to a deeper understanding of groundwater systems and improved management practices.

Journal of Hydrology↗
USGS2025

A method to obtain remotely sensed grain size distributions from nonplanar granular deposits

Constraining the grain size distribution of granular deposits with complex surfaces is difficult with existing approaches. Field and laboratory techniques are time consuming and limited by the maximum grain size that laboratories can accommodate. In this study, we present a new method to identify the coarse fraction of the grain size distribution at a debris-flow fan deposit surveyed with terrestrial laser scanning (TLS) in Glenwood Canyon, Colorado, USA. This method is a novel grain segmentation algorithm developed for application to point cloud data of deposits with complex surfaces and angular grains ranging in size from centimeters to a meter. This approach combines an existing random forest machine learning method with a novel iterative clustering algorithm. We compared the grain size distribution from our algorithm with a Wolman pebble count conducted in the field, and found a root mean squared error of less than 2 cm from the 5th to 95th percentile of the grain size distribution of grains ranging from cobble to boulder sized (6.3–78 cm in our application). Finally, we compared our new algorithm with an existing open-source grain segregation algorithm, and our method outperformed the selected alternative when applied to the debris-flow deposit point cloud.

Colorado↗
USGS2026

Software to support remote sensing of river discharge based on critical flow theory

Water resource management requires accurate observations of streamflow but standard field methods for measuring river discharge ( Q ) are costly and can be hazardous for equipment and personnel. Remote sensing has become a viable alternative, but many image-based techniques require field data for calibration and depth and velocity can seldom be mapped with a single sensor. A new approach based on critical flow theory, in contrast, allows both of these attributes to be inferred from readily available image data. This technique only pertains to sites with standing waves, called undular hydraulic jumps (UHJs), but a recent investigation demonstrated its potential to provide accurate discharge estimates. This paper introduces software designed to facilitate Inferring Q from UHJs Identified in River Images (InQUIRI). The package includes modules for retrieving data from image servers, making the measurements of wavelength and width required to calculate discharge, inferring a representative wavelength from a profile digitized along a wave train, combining multiple estimates to obtain an ensemble median discharge, and assessing accuracy via comparison to gage records from the U.S. Geological Survey. By making these steps easier to implement, InQUIRI enables users to apply the workflow to a variety of UHJ-containing images. Accumulating more case studies, some successful and others less so, would help constrain the range of applicability of the critical flow approach and foster development of refined guidelines for selecting and measuring waves. The software described herein could play an important role in promoting informed use of this new technique for non-contact streamflow measurement.

Arizona, Colorado, New Mexico, Utah↗
USGS2025

Dating a medieval tsunami with uranium-series techniques on Caribbean corals

Uranium-series dates from coral boulders constrain the timing of a medieval tsunami from the Puerto Rico Trench. Previously reported evidence for this tsunami includes hundreds of coral boulders that came to rest hundreds of meters inland on Anegada, British Virgin Islands. New U-series dates on these coral boulders provide limiting dates for the tsunami. The narrowest limits were by dating interior bands of a coral that retains the hemispherical form of a living coral colony, and which include adjustments for the number of annual density band couplets between the dated samples and the boulder exteriors. By those limits, the tsunami dates between 1381 and 1391 CE, and likely occurred during summer or fall. The tsunami is important as the only reported sign that the eastern Puerto Rico Trench has produced a great earthquake. The dating may aid in defining the earthquake source and in communicating tsunami hazards.

British Virgin Islands, Puerto Rico↗
USGS2026

Alternative approaches to dryland reclamation enhance vegetation cover and soil stability at a former uranium mine

Introduction Conventional reclamation methods to recover dryland ecosystems after mineral extraction often have low success. Alternative reclamation techniques may help overcome the many challenges to establishing persistent native vegetation and stable soils. Objectives Compare conventional reclamation approaches that focus primarily on soil stabilization to alternative approaches that may improve native ecosystem restoration at the Kanab North Mine in northern Arizona. Methods In a fully crossed experiment, conventional seed mix (native and non-native species) and seeding methods (drill-seeding) were compared to alternative practices, including a native-only seed mix, connectivity modifiers (ConMods) with hand seeding, and a biocrust inoculation. Restoration metrics like plant establishment, species composition, soil surface cover and stability, biocrust establishment, and near-surface wind-driven sediment were monitored over the first 5 years post-reclamation. Results While all restoration metrics improved with time, compared to traditional methods, ConMods increased total, graminoid, and native plant species cover, and the native-only seed mix increased woody, native, and perennial species cover. Biocrust inoculation increased late-successional biocrust development, but biocrusts only persisted over 5 years in combination with ConMods. Soil stability increased in all treatments, but both ConMods and biocrust inoculation increased stability compared to traditional practices. Conclusion Overall, alternative approaches to reclamation tested here (ConMods, native seed, and biocrust inoculation) were more effective than traditional practices at increasing total plant cover, facilitating biocrust establishment, and promoting soil stability after uranium mine reclamation.

Arizona↗
USGS2026

Utilization of multiple geochronology techniques to constrain the age of laterization and mineralization of the world-class Mount Weld rare earth element deposit, Western Australia

Pervasive chemical weathering on stable cratons may form thick regoliths and elemental enrichment, but constraining the age of regolith formation is challenging. In this study we utilize multiple geochronological techniques on different minerals from the world-class Mount Weld rare earth element (REE) deposit, formed by lateritic weathering of a carbonatite, to constrain the age of formation and provide insight into landscape evolution. The oldest dates, ca. 100 to 38 Ma, are from Lu-Hf dating of churchite [HREE(PO 4 )·2(H 2 O)], a heavy REE phosphate mineral. Growth bands on individual minerals show a younging outwards. 40 Ar/ 39 Ar geochronology of cryptomelane [K(Mn 4+ ,Mn 2+ )₈O₁₆] yielded dates from ca. 40 to 27 Ma. Similarly, (U-Th)/He geochronology of goethite [FeO(OH)] yielded dates ranging from ca. 45 to 19 Ma. Integrating results into regional constraints, suggests 1) churchite formed by mineral saturation in a karst-like setting below the water table from ca. 100 to 40 Ma, 2) with minor uplift and erosion, cryptomelane and goethite formed at or near the water table between ca. 45 and 19 Ma, 3) after ca. 15 to 10 Ma chemical weathering within the profile had ended. Other studies document that the region experienced minimal uplift and a wet, warm climate from ca. 100 Ma to 15 Ma. These conditions and the high carbonate content of the carbonatite promote extensive chemical weathering, a deep weathering profile, and the preservation of the weathered section. This study highlights the use of multiple geochronological techniques utilizing different minerals to provide insight into how laterites form and to constrain the timing and history of the formation of this important mineral deposit.

Western Australia↗
USGS2025

Re-Os geochronology of molybdenite by LA-ICP-MS/MS

Re-Os geochronology is a powerful tool to directly date sulphide mineralisation using phases such as molybdenite, pyrite and chalcopyrite. We present a snapshot of a method in development utilizing laser ablation inductively coupled-plasma ‘triple quad’ mass spectrometry (LA-ICP-MS/MS) for Re-Os geochronology of molybdenite. While traditional LA-(MC)-ICP-MS measurements are limited by the >90% isobaric interference correction of parent radioactive 187 Re on radiogenic daughter 187 Os, the MS/MS technology minimizes this correction through careful instrument tuning and use of a (CH 4 + H 2 + He) reaction gas mixture to mass shift 187 Os away from 187 Re. We demonstrate the potential of the MS/MS technique by presenting robust Re-Os dates for three different molybdenite samples ranging in age from ~28 to 1520 Ma.

Conference Paper↗
USGS2026

Bascom Laser Diffraction Sedimentology Laboratory, Reston, Virginia

Introduction At the Bascom Laser Diffraction Sedimentology Laboratory, which is located in the Florence Bascom Geoscience Center at U.S. Geological Survey (USGS) headquarters in Reston, Virginia, scientists use physical sedimentology and particle characterization techniques to conduct detailed sediment characterization. Scientists address research problems in collaboration with other USGS science centers, State geological surveys, commercial industry, universities, and other partners. Laboratory capabilities include laser diffractometry for quantitative particle-size analysis, portable x-ray fluorescence (XRF) analysis for determining elemental abundances in rock or sediment samples, petrographic analysis of geologic media, and mechanical sieve analysis. These methods are used to analyze soil and sediment core material from terrestrial, marine, and lacustrine environments, surface sediments from coastal regions, and calcareous materials. Work done by the laboratory supports geologic mapping, resource assessments, land change studies, and geohazard analyses.

Fact Sheet↗
USGS2025

VIPER site analysis

We needed to evaluate available orbital data of NASA’s Volatiles Investigating Polar Exploration Rover (VIPER) mission area in order to derive a variety of maps to help the science team identify scientifically interesting places for the rover to visit and to provide scientific context for our mission. Some of these maps also fulfilled engineering and mission design needs to enable safe and efficient landing and roving. We incorporated data from the Lunar Reconnaissance Orbiter Camera, the Lunar Orbital Laser Altimeter, the Mini-RF instrument, the Chandrayaan-2 Orbital High Resolution Camera, the Korean Pathfinder Lunar Orbiter’s Shadowcam, the Kaguya Spectral Profiler and Multiband Imager, and the Chandrayaan-1 Moon Mineralogy Mapper. We used a variety of techniques to build these maps, including stereogrammetry, shape-from-shading, ice stability depth and surface temperature calculations, and the horizon method for solar illumination and direct-to-Earth communications maps. Altogether, these maps allowed us to survey for boulders, evaluate features in permanently shadowed regions that VIPER might explore, provide mineralogic context for what VIPER’s instruments may learn, estimate the ages and radar properties of craters in the VIPER mission area, and evaluate the potential for gravity traverses with the rover. These data and techniques provided a rich set of information from which both the VIPER science team and engineering teams were able to draw in order to plan a safe landing and to plan a VIPER surface mission that will be both scientifically valuable and robust from an operational perspective.

The Planetary Science Journal↗