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Limitations in the use of commercial humic acids in water and soil research

Seven samples of commercial "humic acids", purchased from five different suppliers, were studied, and their characteristics were compared with humic and fulvic acids isolated from streams, soils, peat, leonardite, and a dopplerite sample. Cross-polarization and magic-angle spinning 13C NMR spectroscopy clearly shows pronounced differences between the commercial materials and all other samples. Elemental and infrared spectroscopic data do not show such clear-cut differences but can be used as supportive evidence, with the 13C NMR data, to substantiate the above distinctions. As a result of these differences and due to the general lack of information relating to the source, method of isolation, or other pretreatment of the commercial materials, these commercial products are not considered to be appropriate for use as analogues of true soil and water humic substances, in experiments designed to evaluate the nature and reactivity of humic substances in natural waters and soils.

Environmental Science & Technology

Synthesis on biological soil crust research

In this closing chapter, we summarize the advances in biocrust research made during the last 1.5 decades. In the first part of the chapter, we discuss how in some research fields, such as the microbial diversity of fungi, bacteria, and microfauna; the interaction between biocrusts and vascular plants; and in the rehabilitation of biocrusts; particularly large achievements have been made. In other fields, previously established knowledge of overall patterns has been corroborated and refined by additional studies, e.g., in the fields of soil stabilization and disturbance effects. In the second part of the chapter, we outline the research gaps and challenges foreseen by us. We identify multiple knowledge gaps, including many understudied geographic regions, the largely missing link between genetic and morphological species identification data, and the answers to some mechanistic questions, such as the overall role of biocrusts in hydrology and nutrient cycles. With some ideas on promising new research questions and approaches we close this chapter and the overall book.

Book chapter

Methods of soil resampling to monitor changes in the chemical concentrations of forest soils

Recent soils research has shown that important chemical soil characteristics can change in less than a decade, often the result of broad environmental changes. Repeated sampling to monitor these changes in forest soils is a relatively new practice that is not well documented in the literature and has only recently been broadly embraced by the scientific community. The objective of this protocol is therefore to synthesize the latest information on methods of soil resampling in a format that can be used to design and implement a soil monitoring program. Successful monitoring of forest soils requires that a study unit be defined within an area of forested land that can be characterized with replicate sampling locations. A resampling interval of 5 years is recommended, but if monitoring is done to evaluate a specific environmental driver, the rate of change expected in that driver should be taken into consideration. Here, we show that the sampling of the profile can be done by horizon where boundaries can be clearly identified and horizons are sufficiently thick to remove soil without contamination from horizons above or below. Otherwise, sampling can be done by depth interval. Archiving of sample for future reanalysis is a key step in avoiding analytical bias and providing the opportunity for additional analyses as new questions arise.

Journal of Visualized Experiments

Physiological variation among native and exotic winter annuals associated with microphytic soil crusts in the Mojave Desert

Microbiotic crusts are important components of many aridland soils. Research on crusts typically focuses on the increase in soil fertility due to N-fixing micro-organisms, the stabilization of soils against water and wind erosion and the impact of disturbance on N-cycling. The effect of microbiotic crusts on the associated plant community has received little attention. We quantified the influence of crusts on the production, species diversity, nutrient content and water relations of winter annual plant species associated with microbiotic soil crusts in the northeast Mojave Desert. Shoot biomass of winter annuals was 37% greater and plant density was 77% greater on crusts than were biomass and density on soils lacking crust cover (=bare soils). This greater production of annuals on crusts was likely due to enhanced soil conditions including an almost two-fold increase in soil organic matter and inorganic N compared to bare soils. Crusted soils also had 53% greater volumetric water content than bare soils during November and December, the time when winter annuals become established. As plant development progressed into spring, however, soil water availability decreased: More negative plant xylem water potentials were associated with greater plant biomass on crusted soils. Plants associated with microbiotic soil crusts had lower concentrations of N in shoots (mg N g −1 dry mass). However, total shoot N (mg N m −2 ) was the same in plants growing on the different soil types when biomass production peaked in April. Shoots had similar patterns in their concentration and content of P. Species diversity of annuals was not statistically different between the two soil types. Yet, while native annuals comprised the greatest proportion of shoot biomass on bare soils, exotic forbs and grasses produced more biomass on crusts. Total shoot nutrient content (biomass×concentration) of the two exotic annual species examined was dramatically greater on crusts than bare soils; only one native species had greater shoot content of N and P when growing on crusts than bare soils. Microbiotic crusts appear to increase site fertility in the northeast Mojave Desert, but nutrients and water distributed within a greater biomass of annual plants growing on microbiotic crusts likely resulted in lower concentrations of nutrients in plant tissue and lower xylem pressure potentials than plants growing on bare soils. Exotic annuals growing on crusts appear to respond to the higher N availability by growing faster, potentially outcompeting native annual species.

Plant and Soil

Soil-calcium depletion linked to acid rain and forest growth in the eastern United States

Since the discovery of acid rain in the 1970's, scientists have been concerned that deposition of acids could cause depletion of calcium in forest soils. Research in the 1980's showed that the amount of calcium in forest soils is controlled by several factors that are difficult to measure. Further research in the 1990's, including several studies by the U.S. Geological Survey, has shown that (1) calcium in forest soils has decreased at locations in the northeastern and southeastern U.S., and (2) acid rain and forest growth (uptake of calcium from the soil by roots) are both factors contributing to calcium depletion.

Water-Resources Investigations Report

The over-prediction of seismically induced soil liquefaction during the 2016 Kumamoto, Japan earthquake sequence

Following the M7.0 strike-slip earthquake near Kumamoto, Japan, in April of 2016, most geotechnical engineering experts believed that there would be significant soil liquefaction and liquefaction-induced infrastructure damage observed in the densely populated city of Kumamoto during the post-event engineering reconnaissance. This belief was driven by several factors including the young geologic environment, alluvially deposited soils, a predominance of loose sandy soils documented in publicly available boring logs throughout the region, and the high intensity ground motions observed from the earthquake. To the surprise of many of the researchers, soil liquefaction occurred both less frequently and less severely than expected. This paper summarizes findings from our field, laboratory, and simplified analytical studies common to engineering practice to assess the lower occurrence of liquefaction. Measured in situ SPT and CPT resistance values were evaluated with current liquefaction triggering procedures. Minimally disturbed samples were subjected to cyclic triaxial testing. Furthermore, an extensive literature review on Kumamoto volcanic soils was performed. Our findings suggest that current liquefaction triggering procedures over-predict liquefaction frequency and effects in alluvially deposited volcanic soils. Volcanic soils were found to possess properties of soil crushability, high fines content, moderate plasticity, and unanticipated organic constituents. Cyclic triaxial tests confirm the high liquefaction resistance of these soils. Moving forward, geotechnical engineers should holistically consider the soil’s mineralogy and geology before relying solely on simplified liquefaction triggering procedures when evaluating volcanic soils for liquefaction.

Mount Aso

Use of soil leachates to define the extent of brine-contaminated soils at the USGS petroleum environmental research site "B", Osage County, northeastern Oklahoma

Soils at an active oil production site with a history of surface releases of produced water were investigated to determine the chemical signature of salt contamination and the spatial distribution of soil salinity in relation to areas of obvious salt scarring. Grab samples of shallow soil (0-15 cm) and selected soil profiles to depths of 0.6 to 1.7 m were collected onsite and offsite using a 5-cm diameter stainless steel soil auger. Air dried and disaggregated soil from 15 cm intervals (100 g) was mixed with 100 ml of distilled-deionized water to dissolve readily soluble salts. After 24 hours the water was separated by centrifugation followed by filtration through a 0.45 micrometer membrane. Specific conductance was measured immediately. Dissolved chloride (Cl) and sulfate (SO4) were initially estimated with Cl titration strips and turbidimetric measurements respectively. More accurate measurements of dissolved Cl, SO4, and bromide (Br) were later performed by ion chromatography. Brine-contaminated soil was indicated by (1) unusually elevated Cl concentrations or relatively low ratios of conductance/Cl in aqueous leachates compared to leachates of uncontaminated soils, and (2) ratios of Cl/Br in leachates (250± 30) that fall within the range of Cl/Br ratios measured in local produced waters (220-320). Leachates of background soils from the area were characterized by low conductance (sandy soils) or dissolved solids dominated by sulfates (shaley soils). At the study site, the surface (0-15 cm) distribution of elevated soil salinity was largely confined to areas of obvious salt scarring. Within the area of salt scars, elevated salinity persisted to depths of refusal by manual augering. The technique will be applied to deeper samples obtained by mechanical augering or direct push techniques.

Oklahoma

Temporal and abiotic fluctuations may be preventing successful rehabilitation of soil-stabilizing biocrust communities

Land degradation is a persistent ecological problem in many arid and semi-arid systems globally (drylands hereafter). Most instances of dryland degradation include some form of soil disturbance and/or soil erosion, which can hinder vegetation establishment and reduce ecosystem productivity. To combat soil erosion, researchers have identified a need for rehabilitation of biological soil crusts (biocrusts), a globally-relevant community of organisms aggregating the soil surface and building soil fertility. The impact of plant and biocrust cover was tested on soil erosion potential in the piñon-juniper woodlands of Bandelier National Monument, NM. Biocrusts were found to be similarly influential to vascular plants in reducing erosion, largely acting by promoting surface roughness. The potential to rehabilitate biocrusts within the Monument was also tested. In a full factorial design, plots were inoculated on eroding soils before the summer monsoon with greenhouse-cultured biocrusts, and administered the erosion intervention treatments of overland water flow barriers (flashing), slash placement, and seeding of vascular plants. Although significant and dynamic changes to soil stability, penetration resistance, and extractable soil nutrients were observed through time, no strong effects with the addition of inoculum, seeding, or erosion intervention treatments were seen. These results suggest possible ways forward to successfully rehabilitate biocrust, including varying the timing of biocrust application, amending inoculum application with different types of soil stabilization techniques, and adding nutrients to soils. The insights gleaned from the lack of response brings us closer to developing effective techniques to arrest soil loss in these important social-ecological dryland systems.

Ecological Applications

A global database of soil microbial phospholipid fatty acids and enzyme activities

Soil microbes drive ecosystem function and play a critical role in how ecosystems respond to global change. Research surrounding soil microbial communities has rapidly increased in recent decades, and substantial data relating to phospholipid fatty acids (PLFAs) and potential enzyme activity have been collected and analysed. However, studies have mostly been restricted to local and regional scales, and their accuracy and usefulness are limited by the extent of accessible data. Here we aim to improve data availability by collating a global database of soil PLFA and potential enzyme activity measurements from 12,258 georeferenced samples located across all continents, 5.1% of which have not previously been published. The database contains data relating to 113 PLFAs and 26 enzyme activities, and includes metadata such as sampling date, sample depth, and soil pH, total carbon, and total nitrogen. This database will help researchers in conducting both global- and local-scale studies to better understand soil microbial biomass and function.

Scientific Data

The landscape of soil carbon data: Emerging questions, synergies and databases

Soil carbon has been measured for over a century in applications ranging from understanding biogeochemical processes in natural ecosystems to quantifying the productivity and health of managed systems. Consolidating diverse soil carbon datasets is increasingly important to maximize their value, particularly with growing anthropogenic and climate change pressures. In this progress report, we describe recent advances in soil carbon data led by the International Soil Carbon Network and other networks. We highlight priority areas of research requiring soil carbon data, including (a) quantifying boreal, arctic and wetland carbon stocks, (b) understanding the timescales of soil carbon persistence using radiocarbon and chronosequence studies, (c) synthesizing long-term and experimental data to inform carbon stock vulnerability to global change, (d) quantifying root influences on soil carbon and (e) identifying gaps in model–data integration. We also describe the landscape of soil datasets currently available, highlighting their strengths, weaknesses and synergies. Now more than ever, integrated soil data are needed to inform climate mitigation, land management and agricultural practices. This report will aid new data users in navigating various soil databases and encourage scientists to make their measurements publicly available and to join forces to find soil-related solutions.

Progress in Physical Geography: Earth and Environm

Maintaining wetland ecosystem services in a changing climate

A changing climate is causing challenges for soil and water management in many parts of the world. Current soil management practices need to be redesigned to effectively address present and future fluctuating climates. Soil Hydrology in a Changing Climate explores how soil management practices impact soil hydrological characteristics, and how we can improve our understanding of soil and water management under changing conditions. Soil hydrology includes water infiltration and soil water storage, which are critical for agricultural plant and animal production. With our future climate predicted to include hotter, drier conditions, increases in evapotranspiration as well as fewer, more intense storms, improved soil management and soil hydrology are critical to ensuring our agriculture production can meet human demand. This comprehensive book is a valuable resource for land managers, soil conservationists, researchers and others who wish to understand how different management practices affect soil and water dynamics and how these practices can be adjusted to enhance agricultural sustainability and environmental quality.

Book chapter

Deconstructing the microbial necromass continuum to inform soil carbon sequestration

Microbial necromass is a large, dynamic and persistent component of soil organic carbon, the dominant terrestrial carbon pool. Quantification of necromass carbon stocks and its susceptibility to global change is becoming standard practice in soil carbon research. However, the typical proxies used for necromass carbon do not reveal the dynamic nature of necromass carbon flows and transformations within soil that ultimately determine necromass persistence. In this review, we define and deconstruct four stages of the necromass continuum: production, recycling, stabilization and destabilization. Current understanding of necromass dynamics is described for each continuum stage. We highlight recent advances, methodological limitations and knowledge gaps which need to be addressed to determine necromass pool sizes and transformations. We discuss the dominant controls on necromass process rates and aspects of soil microscale structure including biofilms and food web interactions. The relative importance of each stage of the continuum is then compared in contrasting ecosystems and for climate change drivers. From the perspective of the continuum, we draw three conclusions to inform future research. First, controls on necromass persistence are more clearly defined when viewed through the lens of the continuum; second, destabilization is the least understood stage of the continuum with recycling also poorly evidenced outside of a few ecosystems; and third, the response of necromass process rates to climate change is unresolved for most continuum stages and ecosystems. Future mechanistic research focused on the role of biotic and abiotic soil microscale structure in determining necromass process rates and the relative importance of organo–mineral and organo–organo interactions can inform necromass persistence in different climate change scenarios. Our review demonstrates that deconstructing the necromass continuum is key to predicting the vulnerability and persistence of necromass carbon in a changing world.

Functional Ecology

Selected micrometeorological and soil-moisture data at Amargosa Desert Research Site in Nye County near Beatty, Nevada, 1998-2000

Selected micrometeorological and soil-moisture data were collected at the Amargosa Desert Research Site adjacent to a low-level radioactive waste and hazardous chemical waste facility near Beatty, Nev., 1998-2000. Data were collected in support of ongoing research studies to improve the understanding of hydrologic and contaminant-transport processes in arid environments. Micrometeorological data include precipitation, air temperature, solar radiation, net radiation, relative humidity, ambient vapor pressure, wind speed and direction, barometric pressure, soil temperature, and soil-heat flux. All micrometeorological data were collected using a 10-second sampling interval by data loggers that output daily mean, maximum, and minimum values, and hourly mean values. For precipitation, data output consisted of daily, hourly, and 5-minute totals. Soil-moisture data included periodic measurements of soil-water content at nine neutron-probe access tubes with measurable depths ranging from 5.25 to 29.75 meters. The computer data files included in this report contain the complete micrometeorological and soil-moisture data sets. The computer data consists of seven files with about 14 megabytes of information. The seven files are in tabular format: (1) one file lists daily mean, maximum, and minimum micrometeorological data and daily total precipitation; (2) three files list hourly mean micrometeorological data and hourly precipitation for each year (1998-2000); (3) one file lists 5-minute precipitation data; (4) one file lists mean soil-water content by date and depth at four experimental sites; and (5) one file lists soil-water content by date and depth for each neutron-probe access tube. This report highlights selected data contained in the computer data files using figures, tables, and brief discussions. Instrumentation used for data collection also is described. Water-content profiles are shown to demonstrate variability of water content with depth. Time-series data are plotted to illustrate temporal variations in micrometeorological and soil-water content data. Substantial precipitation at the end of an El Ni?o cycle in early 1998 resulted in measurable water penetration to a depth of 1.25 meters at one of the four experimental soil-monitoring sites.

Nevada

Nutrient availability affects pigment production but not growth in lichens of biological soil crusts

Recent research suggests that micronutrients such as Mn may limit growth of slow-growing biological soil crusts (BSCs) in some of the drylands of the world. These soil surface communities contribute strongly to arid ecosystem function and are easily degraded, creating a need for new restoration tools. The possibility that Mn fertilization could be used as a restoration tool for BSCs has not been tested previously. We used microcosms in a controlled greenhouse setting to investigate the hypothesis that Mn may limit photosynthesis and consequently growth in Collema tenax, a dominant N-fixing lichen found in BSCs worldwide. We found no evidence to support our hypothesis; furthermore, addition of other nutrients (primarily P, K, and Zn) had a suppressive effect on gross photosynthesis (P = 0.05). We also monitored the growth and physiological status of our microcosms and found that other nutrients increased the production of scytonemin, an important sunscreen pigment, but only when not added with Mn (P = 0.01). A structural equation model indicated that this effect was independent of any photosynthesis-related variable. We propose two alternative hypotheses to account for this pattern: (1) Mn suppresses processes needed to produce scytonemin; and (2) Mn is required to suppress scytonemin production at low light, when it is an unnecessary photosynthate sink. Although Mn fertilization does not appear likely to increase photosynthesis or growth of Collema, it could have a role in survivorship during environmentally stressful periods due to modification of scytonemin production. Thus, Mn enrichment should be studied further for its potential to facilitate BSC rehabilitation. ?? 2008 Elsevier Ltd.

Soil Biology and Biochemistry

Electrochemical stabilization as a means of preventing ground failure in railroads

Laboratory and field data on electrochemical stabilization of clays, by three Russian authors, are here presented in translation. Abstracts of the Russian papers were published in May 1947 issue of the Engineering News Record (pp. 100-101). There exists also a small body of literature, in German and English, dealing with the electrochemical stabilization and related subjects. Elements of the electrochemical process were patented by Casagrande in Germany, shortly before the last war. Results of the Russians and of others, including the German patent, appear to be sound and interesting accordingly. Mechanism of the electrochemical stabilization, however, appears to be surmised rather than established. Unless the mechanism of such stabilization is understood in detail, little progress may be expected in field applications of the electrochemical method. Electroosmosis, a poorly reversible coagulation of the soil colloids, and introduction of exchangeable aluminum into the clay complex have been given credit for the ground-stabilizing effects of direct electrical current. Much remains to be done, as the reader may see, in developing further the theory of the method. A critical study is indicated, in this connection, by agencies or individuals qualified and equipped for basic research in soil physics. Optimum schedules for field treatments need be ascertained with particular care, to suit any given kind of material and environment. A wide range of variation in such schedules, is most certainly to be encountered in dealing with materials as diverse in their composition and properties as are clays. Any generalization on relationships between soil, electrolytes, moisture, and current could be premature if based on the Russian work alone. Stabilization of ground is a major engineering geologic problem of national interest. Needless to say, perhaps, that failures are to be expected, in laboratory and in the field, in this as well as in any other kind of research. To minimize probabilities of such failures, it may be recommended that investigators develop the electrochemical stabilization problem not merely against the relatively narrow background of soil mechanics, but with a certain feeling for geology, mineralogy, pedology, soil physics, and soil chemistry.

Open-File Report

Rehabilitation of gypsum-mined lands in the Indian desert

The economic importance of mining in the Indian Desert is second only to agriculture. Land disturbed by mining, however, has only recently been the focus of rehabilitation efforts. This research assesses the success of rehabilitation plans used to revegetate gypsum mine spoils within the environmental constraints of the north-west Indian hot-desert ecosystem. The rehabilitation plan first examined both mined and unmined areas and established assessments of existing vegetative cover and the quality of native soils and mine spoils. Tests were made on the effect of the use, and conservation, of available water through rainwater harvesting, amendment application (for physical and chemical spoil modification), plant establishment protocols, and the selection of appropriate germ plasm. Our results show that the resulting vegetative cover is capable of perpetuating itself under natural conditions while concurrently meeting the needs of farmers. Although the mine spoils are deficient in organic matter and phosphorus, they possess adequate amounts of all other nutrients. Total boron concentrations (>5.0 mg kg-1) in both the topsail and mine spoil indicate potentially phytotoxic conditions. Electrical conductance of mine spoil is 6-10 times higher than for topsail with a near-neutral pH. Populations of spoil fungi, Azotobactor, and nitrifying bacteria are low. The soil moisture storage in rainwater harvesting plots increased by 8% over the control and 48% over the unmined area. As a result of rehabilitation efforts, mine spoils show a steady buildup in organic carbon, and P and K due to the decomposition of farmyard manure and the contribution of nitrogen fixation by the established leguminous plant species. The rehabilitation protocol used at the site appears to have been successful. Following revegetation of the area with a mixture of trees, shrubs, and grasses, native implanted species have become established. Species diversity, measured in terms of species richness, increased after one year and then gradually declined over time; the decline was the result of the loss of annual species. The study not only develops methods of gypsum mine land rehabilitation but also helps in understanding processes of rehabilitation success in arid regions and emphasizes the importance of long-term monitoring of rehabilitation success. Copyright ?? 2001 Taylor & Francis.

Arid Soil Research and Rehabilitation

Soil respiration at the Amargosa Desert Research site: A section in U.S. Geological Survey Toxic Substances Hydrology Program: Proceedings of the technical meeting, Charleston, South Carolina, March 8-12, 1999: Volume 3 (Part C) (WRI 99-4018C)

Automated opaque flux-chamber measurements of soil carbon dioxide (CO 2 ) flux (soil respiration) into the atmosphere at the Amargosa Desert Research Site show seasonal and diel cycles of soil respiration that are closely linked with soil temperature and soil moisture. During 1998, soil respiration increased with soil warming through spring, reaching a maximum rate (not counting anomalously high values scattered through the record) of about 0.055 moles CO 2 m -2 day -1 around Julian Day 120. Respiration rates then declined along with volumetric soil moisture content, tending to stay at or below about 0.02 moles CO 2 per square meter per day (m -2 day -1 ) for the rest of the year, except after summer rainfalls when respiration sharply increased for short periods. The diel respiration pattern during dry spells is marked by a sharp rise in CO 2 flux coincident with steeply rising soil temperatures in the morning, then dropping back to low levels about the time of maximum soil temperature. The reason for this pattern in unclear.

Nevada