Geology ReportsSearch

SEARCH · Geology Reports

Results for “Mammal Study”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 recordsLinked to original sources

The use of a robust capture-recapture design in small mammal population studies: A field example with Microtus pennsylvanicus

The robust design of Pollock (1982) was used to estimate parameters of a Maryland M. pennsylvanicus population. Closed model tests provided strong evidence of heterogeneity of capture probability, and model M eta (Otis et al., 1978) was selected as the most appropriate model for estimating population size. The Jolly-Seber model goodness-of-fit test indicated rejection of the model for this data set, and the M eta estimates of population size were all higher than the Jolly-Seber estimates. Both of these results are consistent with the evidence of heterogeneous capture probabilities. The authors thus used M eta estimates of population size, Jolly-Seber estimates of survival rate, and estimates of birth-immigration based on a combination of the population size and survival rate estimates. Advantages of the robust design estimates for certain inference procedures are discussed, and the design is recommended for future small mammal capture-recapture studies directed at estimation.

Acta Theriologica

One size does not fit all: Adapting mark-recapture and occupancy models for state uncertainty

Multistate capture?recapture models continue to be employed with greater frequency to test hypotheses about metapopulation dynamics and life history, and more recently disease dynamics. In recent years efforts have begun to adjust these models for cases where there is uncertainty about an animal?s state upon capture. These efforts can be categorized into models that permit misclassification between two states to occur in either direction or one direction, where state is certain for a subset of individuals or is always uncertain, and where estimation is based on one sampling occasion per period of interest or multiple sampling occasions per period. State uncertainty also arises in modeling patch occupancy dynamics. I consider several case studies involving bird and marine mammal studies that illustrate how misclassified states can arise, and outline model structures for properly utilizing the data that are produced. In each case misclassification occurs in only one direction (thus there is a subset of individuals or patches where state is known with certainty), and there are multiple sampling occasions per period of interest. For the cases involving capture?recapture data I allude to a general model structure that could include each example as a special case. However, this collection of cases also illustrates how difficult it is to develop a model structure that can be directly useful for answering every ecological question of interest and account for every type of data from the field.

Book chapter

Performance of a satellite-linked GPS on Pacific walruses (Odobenus rosmarus divergens)

We evaluated the utility of a satellite-linked GPS in obtaining location data from Pacific walruses ( Odobenus rosmarus divergens ). A unit was attached to one of the tusks of each of three adult male walruses in Bristol Bay, Alaska. The units were designed to relay GPS positions through the Argos Data Collection and Location System. The GPS was only minimally effective in obtaining location data. An average of only 5% of the attempts yielded a position, and only a small number of these were locations at sea. The paucity of successful attempts was probably due to infrequent and brief surfacings of the GPS, the proximity of cliffs to predominant haul-out sites in the study region, and the packing of animals when they were hauled out in herds. Argos was effective in relaying GPS positions in this study, but as GPS technology advances, and its application to marine mammal studies becomes more prevalent, it seems that the greatest challenge to the study of many species will be in data retrieval.

Polar Biology

Track tube construction and field protocol for small mammal surveys with emphasis on the endangered Pacific pocket mouse (Perognathus longimembris pacificus)

Track tubes are used to identify small animals by their tracks. Animals that are small enough to fit into the tubes walk over ink pads and onto cardstock paper to obtain bait within the tube, leaving their footprints. The tracking tubes described in this document are designed to be set on the ground with free access and exit at either end with additional design components for stability, durability, and efficiency. They are also designed to prevent dirt from getting onto the ink pads and to decrease the ability of birds and other mammals to pull out track cards or bait. We describe detailed methods for constructing, setting and checking track tubes, as well as measuring and identifying small mammal prints for a small mammal study. The protocols described are for monitoring the Pacific pocket mouse (PPM); however, this method can be applied to many small mammal species that have uniquely identifiable tracks in relation to co-occurring species. We have deployed track tubes for over 5 years on Marine Corps Base Camp Pendleton for PPM discovery efforts and to monitor the three extant PPM populations on Base. We have shown that nightly detection probability is similar to that of live-trapping, but the track tubes can be checked weekly or bi-monthly. We use this passive and economical method to assess timing of annual emergence and torpor, seasonal activity, and localized colonization and extinction events. Using this method, we can model occupancy dynamics in relation to habitat and disturbance covariates that directly inform management and support a monitoring and management feedback loop for this species.

California

Mammals of Red Slough Wildlife Management Area, with comments on McCurtain County, Oklahoma

Red Slough Wildlife Management Area (RSWMA) is located in the southeastern corner of Oklahoma, McCurtain County, and represents the extreme northwestern extent of the South Central Plains (SCP) ecoregion. Previous mammal research in southeastern Oklahoma has focused mostly on the Ouachita Mountains to the north of RSWMA. As a result, of the 69 species of mammals potentially occurring in McCurtain County, only 48 species represented by 599 voucher specimens reside in natural history collections. We present results from a mammal survey of RSWMA conducted from December 2009 to August 2010. We captured 574 non-volant small mammals in 9,115 trap-nights, 11 bats in 17 net-nights, and seven salvaged meso-mammals resulting in 157 voucher specimens of 22 mammal species, including the first specimen of Castor canadensis for McCurtain County, and photographic vouchers for eight additional species from RSWMA. These results provide a baseline for future studies on RSWMA and substantially increase our natural history knowledge for many relatively under-studied mammals in southeastern Oklahoma

Oklahoma

Waterfowl and their wintering grounds in Mexico, 1937-64

The U.S. Fish and Wildlife Service has been interested in migratory birds, especially waterfowl, in Mexico for many years, An early period of cooperation in waterfowl administration was culminated in 1937 with the final ratification of the Convention Between the United States and the United Mexican States for the Protection of Migratory Birds and Game Mammals, usually referred to as the Migratory Bird Treat. Management of waterfowl on this continent is primarily carried out by hunting regulations. Current information on the status of each species must be obtained each year to serve as a basis for any needed modifications in the regulations. In the United States and Canada, wildlife biologists of the U.S. Fish and Wildlife Service and the Canadian Wildlife Service annually make the surveys to obtain this basic information. But the Government of Mexico has made no comparable surveys. Mexicans are not interested in hunting waterfowl to the extent that citizens of the United States and Canada are. As a consequence, Mexico's Department of Game emphasizes activities other than waterfowl management. Waterfowl, especially ducks, winter in or migrate through Mexico in large numbers, so it is obvious that and continental surveys of the winter population should include Mexico. Some general investigations of waterfowl distribution there were made in 1926 and earlier by E. A. Goldman. He was familiar with much of Mexico because he and E. W. Nelson studied mammals and biota there for many years. In the 1930's, because of the greater emphasis on waterfowl conservation and management, more detailed surveys were made of the continental breeding and wintering populations. One of these activities was designated as the midwinter, or January, inventory. In the early 1940's the senior author, who had been the Central Flyaway Biologist since 1937, recommended that the waterfowl wintering grounds in Mexico be included in the coverage of the midwinter waterfowl inventory. This was arranged in 1947, and the first aerial coverage, which only included coastal localities, was made in January-February of that year. The information obtained confirmed the value and advisability of including the Mexican wintering grounds in the annual survey; beginning in 1951 the wintering grounds in the Mexican highlands also were included. The surveys of Mexico were continued, except in 1957, through 1965; after 1965 they were greatly reduced. Ground reconnaissance and surveys had begun in Mexico with the preliminary work of Goldman in 1926, but quantitative studies were not started until 1937. The ground surveys continued at intervals in various parts of the Republic until 1960. Ground surveys are invaluable for such purposes as securing ecological information, specimens of birds and plants, and historical data about the areas from local residents, but the only satisfactory method of obtaining accurate quantitative information on waterfowl populations and their distribution is by airplane. Consequently, the major emphasis since 1947 has been on the annual aerial surveys. Ground studies were made much less frequently and were carried out mainly to obtain correlative information on the waterfowl foods available, the ecology of habitats, and for liaison with wildlife officials and biologists in Mexico. An important reason for the surveys of the waterfowl wintering grounds in Mexico was to determine their adequacy for the population of birds using them, and their potential to accommodate additional waterfowl if the wintering grounds in the United States became inadequate and larger flights entered Mexico. Other advantages included providing accurate information to hunters and other interested persons in the United States regarding the waterfowl shooting in Mexico, and determining the current status of these birds and their habitats in that country. Some of these findings were previously summarized by us (Saunders and Saunders 1949; Saunders 1964).

Resource Publication

Serum iron analytes in healthy and diseased Florida manatees (Trichechus manatus latirostris)

Serum iron concentration is usually decreased in true iron deficiency and with inflammatory disease in man and domestic animals. Serum total iron binding capacity (TIBC) may be increased in true iron deficiency and decreased with inflammatory disease. This prospective study was designed to measure serum iron analytes in healthy free-ranging and housed Florida manatees (Trichechus manatus latirostris) of both sexes and various ages and to evaluate the effects of diseases common to manatees on these analytes. Blood samples were collected without anticoagulant from 137 healthy free-ranging manatees, 90 healthy housed manatees and 74 free-ranging diseased manatees, and serum was prepared by centrifugation. Serum iron concentration and unsaturated iron binding capacity were measured colourimetrically, and TIBC and percent transferrin saturation with iron were calculated. Serum amyloid A (SAA) was measured to assist in the health assessment of manatees and provide evidence of inflammation in diseased manatees. Based on the serum iron analytes, iron availability was lower in immature manatees compared with adults, and it was lower in housed manatees compared with free-ranging manatees. In contrast to other mammals studied, serum iron concentration was elevated rather than depressed in late pregnancy. Serum iron concentrations and transferrin saturation with iron percentages were significantly lower, and SAA concentrations were significantly higher, in diseased (ill and injured) manatees compared with healthy manatees. Serum iron concentration and transferrin saturation with iron values were negatively correlated with SAA concentrations, and manatees with the highest SAA concentrations had lower serum TIBC values. These findings indicate that inflammation is the major factor responsible for alterations in iron analytes in diseased manatees. Consequently, hypoferraemia may be used as supportive evidence of inflammatory disease in manatees (unless haemorrhage is also present). A decision threshold of ≤13.8 μmol/l was determined for hypoferraemia using receiver operating curve analysis. Based on studies in man and domestic animals, iron therapy is unnecessary for manatees with hypoferraemia associated with inflammation and has the potential for causing tissue damage and increased susceptibility to bacterial infections.

Florida

Camera traps reveal an apparent mutualism between a common mesocarnivore and an endangered ungulate

Camera traps are commonly used to study mammal ecology and they occasionally capture previously undocumented species interactions. The key deer (Odocoileus virginianus clavium) is an endangered endemic subspecies of the Florida Keys, where it exists with few predators. We obtained a camera trap sequence of 80 photos in which a key deer interacted with two northern raccoons (Procyon lotor). One of the raccoons groomed the deer’s face for ∼1 min. This interaction is peculiar and appears mutualistic because the deer was not concerned and willingly remained still throughout the physical contact. Although mutualistic relationships between deer and birds are common, we are unaware of any previously documented mesocarnivore-deer mutualisms. Key deer have evolved in the absence of mammalian predators and we hypothesize that they exhibit reduced vigilance or concern when encountering other species because of predator naivety. Key deer and raccoons are commonly associated with humans and urbanization and an alternative hypothesis is that the interactions are a consequence of heightened deer density, causing a greater probability of sustained interactions with the common mesocarnivores.

Mammalian Biology

A case for multiscale habitat selection studies of small mammals

Habitat information for small mammals typically consists of anecdotal descriptions or infrequent analyses of habitat use, which often are reported erroneously as signifying habitat preference, requirements, or quality. Habitat preferences can be determined only by analysis of habitat selection, a behavioral process that results in the disproportionate use of one resource over other available resources and occurs in a hierarchical manner across different environmental scales. North American chipmunks ( Neotamias and Tamias ) are a prime example of the lack of studies on habitat selection for small mammal species. We used the Organ Mountains Colorado chipmunk ( N. quadrivittatus australis ) as a case study to determine whether previous descriptions of habitat in the literature were upheld in a multiscale habitat selection context. We tracked VHF radiocollared chipmunks and collected habitat information at used and available locations to analyze habitat selection at three scales: second order (i.e., home range), third order (i.e., within home range), and microhabitat scales. Mean home range was 2.55 ha ± 1.55 SD and did not differ between sexes. At the second and third order, N. q. australis avoided a coniferous forest land cover type and favored particular areas of arroyos (gullies) that were relatively steep-sided and greener and contained montane scrub land cover type. At the microhabitat scale, chipmunks selected areas that had greater woody plant diversity, rock ground cover, and ground cover of coarse woody debris. We concluded that habitat selection by N. q. australis fundamentally was different from descriptions of habitat in the literature that described N. quadrivittatus as primarily associated with coniferous forests. We suggest that arroyos, which are unique and rare on the landscape, function as climate refugia for these chipmunks because they create a cool, wet microclimate. Our findings demonstrate the importance of conducting multiscale habitat selection studies for small mammals to ensure that defensible and enduring habitat information is available to support appropriate conservation and management actions.

New Mexico

Estimation methodology in contemporary small mammal capture-recapture studies

Estimators of population size and survival rate based on the Jolly-Seber capture-recapture model and the “enumeration method” are described. Enumeration estimators are shown to estimate complicated functions of capture and survival probabilities and, in the case of the population size estimator, population size. Frequently-listed reasons for preferring enumeration estimators are discussed and the Jolly-Seber estimators are shown to be superior even in the case of heterogeneity and trap-happy response, the two sources of unequal capture probability most likely to occur in small mammal studies. New developments in probabilistic capture-recapture models are described, and these models are recommended for future small mammal capture-recapture studies.

Journal of Mammalogy

Integrating occurrence and detectability patterns based on interview data: a case study for threatened mammals in Equatorial Guinea

Occurrence models that account for imperfect detection of species are increasingly used for estimating geographical range, for determining species-landscape relations and to prioritize conservation actions worldwide. In 2010, we conducted a large-scale survey in Río Muni, the mainland territory of Equatorial Guinea, which aimed to estimate the probabilities of occurrence and detection of threatened mammals based on environmental covariates, and to identify priority areas for conservation. Interviews with hunters were designed to record presence/absence data of seven species (golden cat, leopard, forest elephant, forest buffalo, western gorilla, chimpanzee and mandrill) in 225 sites throughout the region. We fitted single season occupancy models and recently developed models which also include false positive errors (i.e. species detected in places where it actually does not occur), which should provide more accurate estimates for most species, which are susceptible to mis-identification. Golden cat and leopard had the lowest occurrence rates in the region, whereas primates had the highest rates. All species, except gorilla, were affected negatively by human settlements. The southern half of Río Muni showed the highest occurrence of the species studied, and conservation strategies for ensuring the persistence of threatened mammals should be focused on this area.

Scientific Reports

Trends in North American small mammals found in common barn-owl (Tyto alba) dietary studies

Data on mammals were compiled from published studies of common barn-owl (Tyto alba) pellets. Mammalian composition of pellet samples was analyzed within geographic regions in regard to year, mean annual precipitation, latitude, and number of individual mammals in the sample. Percentages of individuals in pellets that were shrews increased whereas the percentages of rodents decreased with greater mean annual precipitation, especially in northern and western areas of North America. From the 1920s through 1980s, in northern and eastern areas the percentage of species that was shrews decreased, and in northern and central areas the percentage of individuals that was murid rats and mice increased. Human alterations of habitats during these seven decades are postulated to have caused changes in available small mammals, leading to changes in the barn-owl diet.

Canadian Journal of Zoology

Responses of vertebrate wildlife to oil and natural gas development: Patterns and frontiers

Purpose of Review Anthropogenic activities can lead to the loss, fragmentation, and alteration of wildlife habitats. I reviewed the recent literature (2014–2019) focused on the responses of avian, mammalian, and herpetofaunal species to oil and natural gas development, a widespread and still-expanding land use worldwide. My primary goals were to identify any generalities in species’ responses to development and summarize remaining gaps in knowledge. To do so, I evaluated the directionality of a wide variety of responses in relation to taxon, location, development type, development metric, habitat type, and spatiotemporal aspects. Recent Findings Studies ( n = 70) were restricted to the USA and Canada, and taxonomically biased towards birds and mammals. Longer studies, but not those incorporating multiple spatial scales, were more likely to detect significant responses. Negative responses of all types were present in relatively low frequencies across all taxa, locations, development types, and development metrics but were context-dependent. The directionality of responses by the same species often varied across studies or development metrics. Summary The state of knowledge about wildlife responses to oil and natural gas development has developed considerably, though many biases and gaps remain. Studies outside of North America and that focus on herpetofauna are lacking. Tests of mechanistic hypotheses for effects, long-term studies, assessment of response thresholds, and experimental designs that isolate the effects of different stimuli associated with development, remain critical. Moreover, tests of the efficacy of habitat mitigation efforts have been rare. Finally, investigations of the demographic effects of development across the full annual cycle were absent for non-game species and are critical for the estimation of population-level effects.

Current Landscape Ecology Reports

Effects of roads on small mammals

(1) The study was designed to determine the effects of roads on the diversity, spatial distribution, and density of small mammals. (2) Forty species of small mammal (5859 individuals) were snap-trapped in the study. Data resulted from 144 360 trap-nights of effort for an average of 4.06 captures per 100 trap-nights. (3) Small mammal community structure and density were both influenced by roads. Community structure in right-of-way (ROW) habitat was different from that in adjacent habitat. Five species did not prefer ROW habitat: the golden mouse, dusky-footed woodrat, brush mouse, pinon mouse, and California red-backed vole. However, there were more species present in ROW habitat than in adjacent habitat. Grassland species generally preferred ROW habitat and many less habitat-specific species were distributed in ROW and adjacent habitat. (4) Small mammal density (all species combined) was greater in interstate ROW habitat than in adjacent habitat. This was also true individually for the eastern harvest mouse, white-footed mouse, meadow vole, prairie vole, vagrant shrew. Townsend's vole, and California vole. Small mammal density was less in county road ROWs than in adjacent habitat, probably because of the small size of these areas. The data indicate that ROW habitat and its accompanying edge are attractive no: only to grassland species but also to many less habitat-specific species that make use of the ROW-edge-adjacent habitat complex. (5) Mortality on interstate highways was greatest for those species with highest densities in ROW habitat, and did not appear to be detrimental to populations of these species.

Journal of Applied Ecology