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USGS2005

Manganese concentration in lobster ( Homarus americansus ) gills as an index of exposure to reducing conditions in Western Long Island Sound

We examined the accumulation of manganese (Mn) in gill tissues of chemically naïve lobsters held in situ at six sites in Long Island Sound (LIS) for up to six weeks to evaluate the possible contribution of eutrophication-driven habitat quality factors to the 1999 mass mortality of American lobsters ( Homarus americanus ). These western LIS lobster habitats experience seasonal hypoxia, which results in redox-mobilized Mn being transferred to and deposited on the tissues of the lobsters. Manganese accumulated in gill tissue of lobsters throughout the study, but rates were highest at western and southern LIS sites, ranging from 3.4–0.8 μ g/g/d (~16 μg/g initial). The Baden-Eriksson observation that Mn accumulation in Norway lobsters ( Nephrops norvegicus ) is associated with ecosystem hypoxia is confirmed and extended to H. americanus . It seems likely that, after accounting for molting frequency, certain critical values may be applied to other lobster habitats of the NE US shelf. If a high proportion of lobsters in autumn have gill Mn concentrations exceeding 30 μg/g, then the habitats are likely experiencing some reduced oxygen levels. Manganese concentrations above 100 μg/g suggest exposure to conditions with the potential for lobster mortality should the temperatures of bottom waters become elevated, and gill concentrations above some higher level (perhaps 300 μg/g) indicate the most severe habitat conditions with a strong potential for hypoxia stress.

Journal of Shellfish Research↗

USGS2003

Review of techniques to prevent introduction of zebra mussels (Dreissena polymorpha) during native mussel (Unionoidea) conservation activities

Because of the declines in diversity and abundance of native freshwater mussels (superfamily Unionoidea), and the potential decimation of populations of native mussels resulting from the rapid spread of the exotic zebra mussel Dreissena polymorpha, management options to eliminate or reduce the threat of the zebra mussel are needed. Relocating native mussels to refugia (artificial and natural) has been proposed to mitigate the threat of zebra mussels to native species. Relocation of native mussels to refugia such as fish hatchery facilities or natural habitats within their historic range. Which are unlikely to be infested by zebra mussels, necessitates that protocols be developed to prevent the inadvertent introduction of zebra mussels. Several recent studies have developed Such protocols, and have assessed their effectiveness on the health and survival of native mussels during subsequent relocation to various refugia. The purpose of this project is to synthesize and evaluate the current protocols and to develop a set of procedures that resource managers and researchers should consider before conducting conservation activities in zebra mussel infested waters. We found that the existing protocols have many common points of concern, such as facility modification and suitability, zebra mussel risk assessment and management procedures, and health and disease management procedures. These conservation protocols may have broad applicability to other situations and locations. A summary and evaluation of the information in these main areas, along with recommended guidelines, are presented in this article.

Journal of Shellfish Research↗

USGS2019

The effects of seasonal temperature and photoperiod manipulation on reproduction in the eastern elliptio Elliptio complanata

The eastern elliptio Elliptio complanata is a species of freshwater mussel common to streams and rivers of the Atlantic Coast. Egg fertilization, larval brooding, and glochidial release are reported to occur within a period of several weeks during early to midsummer. In this study, mussels were exposed to manipulated photoperiod and water temperatures to prolong the availability of glochidia for use in artificial propagation and research. Brooding mussels were collected from Pine Creek, Tioga County, PA, in late December and were housed in groups subjected to one of four environmental treatments: natural temperature and photoperiod, 6-wk delay in natural conditions, 12-wk delay in natural conditions, and natural temperature and photoperiod with a winter low of 10°C. Reproductive activity was monitored for 1 y. Mussels subjected to natural conditions released mature glochidia between 16°C and 19°C with a photoperiod of 15 h of light. Temperature and photoperiod delays of 6 and 12 wk delayed reproduction proportional to the treatment, and constant 10°C winter low temperatures slightly shifted the timing of glochidial release. Survival during the study was high (96%–100%). Data indicate that the seasonal availability of E. complanata glochidia can be extended 3-fold using photoperiod and temperature manipulation.

Journal of Shellfish Research↗

USGS2012

Bibliography of Dreissena polymorpha (zebra mussels) and Dreissena rostriformis Bugensis (QUAGGA mussels): 1989 to 2011

Dreissenid mussels invaded and colonized waters of the Laurentian Great Lakes during the late 1980s. Their colonization and resulting impact have been characterized as one of the most important ecological changes in freshwater systems in North America. The need for information on dreissenid mussels has grown during the past 2 decades, which has prompted the compilation of this bibliography. Two previous bibliographies of dreissenid mussels indicate average publication rates were 6 publications/year between 1771 and 1964 (1,180 in 194 y) and 30 publications/year between 1964 and 1993 (885 in 30 y). In the current bibliography, the average rate of publication doubled during the past 23 y (1989 to 2011) to 66 publications/year based on a total of 1,502 publications. These rates may be biased by increased numbers of researchers and journals over time but, at a minimum, these rates indicate continued interest and concern by humans about the impact of dreissenid mussels on water availability and the expanding range of dreissenids throughout the world. The current bibliography has a 94% efficiency rate for subject and 100% efficiency for title search criteria when compared with references in published studies of dreissenid mussels in 2011. In addition to publications, we included 206 student theses and 225 chapters in 26 books including 6 books devoted solely to dreissenid mussels. A vast majority of student theses were about dreissenid mussels in North America, especially in the Laurentian Great Lakes. The 6 books devoted to dreissenid mussels contained a variety of chapters that described biology, impact, control, and ecology of dreissenid mussels in both Europe (published in 1992 and 2010) and North America (1993, 1994, 1997, and 2000). In addition, there is a 7th book devoted solely to dreissenid mussels that is near completion.

Journal of Shellfish Research↗

USGS2008

A survey of the indigenous microbiota (bacteria) in three species of mussels from the Clinch and Holston Rivers, Virginia

Freshwater mussel conservation efforts by many federal and state agencies have increased in recent years. This has led to a greater number of stream surveys, in which mussel die-offs involving high numbers of dead and moribund animals are being observed and reported with greater frequency. Typically, die-offs have been incidentally observed while research was being done for other purposes, therefore, accurate mortality data have been difficult to obtain. Specifically, seasonal die-offs were noted in localized areas of the Clinch and Holston Rivers, Virginia, and to lesser degrees, in neighboring rivers in this geographic region, including southeast Virginia. The observed mussel species affected were primarily the slabside pearlymussel ( Lexingtonia dolabelloides ) and to lesser extents, the pheasantshell ( Actinonaias pectorosa ), rainbow mussel ( Villosa iris ), and the endangered shiny pigtoe ( Fusconaia cor ). To determine if a bacterial pathogen might be involved in these recurring mussel die-offs, this study examined characteristics of the indigenous microbiota (bacteria) from healthy mussels from sites on the Clinch and Holston Rivers where die-offs were previously observed. These baseline data will allow for recognition of bacterial pathogens in future mussel die-offs. Means for total bacteria from soft tissues ranged from 1.77 × 10 5 to 3.55 × 10 6 cfu/g; whereas, the range in means from fluids was 2.92 × 10 4 to 8.60 × 10 5 cfu/mL. A diverse microbiota were recovered, including species that are common in freshwater aquatic environments. The most common bacterial groups recovered were motile Aeromonas spp. and nonfermenting bacteria. Flavobacterium columnare , a pathogen to cool- and warm-water fishes was recovered from one specimen, a Villosa iris from the Clinch River.

Virginia↗

USGS2009

Proximate causes of sexual size dimorphism in horseshoe crabs (Limulus Polyphemus) of the Delaware Bay

The unresolved status of the proximate cause for sexual size dimorphism in horseshoe crabs has practical consequence, because harvest recommendations rely on assumptions about sex-specific growth and maturity. We propose and evaluate competing hypotheses for the proximate cause of sexual size dimorphism in horseshoe crabs (Limulus polyphemus) by comparing size and estimated age frequencies from spring-captured juveniles (n = 9,075) and adults (n = 36,274) to predictions from the competing hypotheses. We found that the number of identifiable juvenile size distributions was greater for females than males and the probability of remaining a juvenile was higher for females than males among older juveniles. These findings are consistent with males maturing earlier than females. Molt increments and mean sizes were similar for male and female juveniles, which is not consistent with differential growth. Among adults, one size distribution accounted for ???90% of females regardless of carapace wear. Also, size ratio of adult females to males was 1.26, and size ratio of the largest adult to largest juvenile female was 1.28. These observations are not consistent with females continuing to molt as adults. Differential-maturity is the most parsimonious explanation for sexual size dimorphism in Delaware Bay horseshoe crabs. In addition, because of a low frequency of juvenile females >195 mm relative to adult females and male-biased sex ratios starting at 105 mm, we hypothesize that females, more than males, migrate as older juveniles and mature in the ocean. Management implications include that (1) minimum size limits, as previously suggested, would not allocate harvest to older adults as intended because size does not indicate age among adult horseshoe crabs in the Delaware Bay population, and (2) the Shuster Horseshoe Crab Reserve, which has reduced harvest on the continental shelf, could be protecting older juveniles and newly mature females from harvest prior to their first spawn.

Journal of Shellfish Research↗

USGS2011

Predominant bacteria isolated from moribund Fusconaia ebena ebonyshells experiencing die-offs in Pickwick Reservoir, Tennessee River, Alabama

Mussel die-offs have been noted in recent years in Pickwick Reservoir, Tennessee River, Alabama. The primary affected species was Fusconaia ebena, but also affected to lesser degrees were Ellipsaria lineolata, Quadrula pustulosa, and Quadrula quadrula. These events were characterized by large numbers of empty shells—fresh-dead and live individuals that were presumed to be diseased because of weak and slow valve closure responses to external stimuli. Anecdotal evidence suggested the possible involvement of an etiological agent, such as a bacterial pathogen. The die-offs have occurred in Pickwick Reservoir (river miles 236–256) in sequential years during the past approximately 10 y. These timeframes have coincided with reduced basin inflows and warmer water temperatures. The majority of the moribund and freshly dead F. ebena were females possibly predisposed to infection and disease from ongoing reproductive activity. Affected and healthy-cohort mussels were collected to characterize the bacterial flora prior to, during, and after a July 2006 die-off, and during a subsequent die-off in September 2008. The numbers of total bacteria from both the 2006 and 2008 die-offs were significantly greater from the diseased specimens. For example, from the September 2008 die-off, the mean count from diseased F. ebena soft tissues was 9.75 × 10 6 cfu/g, which was more than 100 times greater (P = 0.025) than the mean from healthy cohorts (6.74 × 10 4 cfu/g). The predominant bacteria from affected F. ebena from July 2006 were Hafnia alvei and Aeromonas sobria, whereas from September 2008 the predominant bacteria were Enterobacter spp., Aeromonas schubertii, Aeromonas veronii bv. veronii, and Aeromonas veronii bv. sobria.

Alabama↗

USGS2012

Development of a real-time PCR assay for detection of planktonic red king crab ( Paralithodes camtschaticus (Tilesius 1815)) larvae

The Alaskan red king crab ( Paralithodes camtschaticus ) fishery was once one of the most economically important single-species fisheries in the world, but is currently depressed. This fishery would benefit from improved stock assessment capabilities. Larval crab distribution is patchy temporally and spatially, requiring extensive sampling efforts to locate and track larval dispersal. Large-scale plankton surveys are generally cost prohibitive because of the effort required for collection and the time and taxonomic expertise required to sort samples to identify plankton individually via light microscopy. Here, we report the development of primers and a dual-labeled probe for use in a DNA-based real-time polymerase chain reaction assay targeting the red king crab, mitochondrial gene cytochrome oxidase I for the detection of red king crab larvae DNA in plankton samples. The assay allows identification of plankton samples containing crab larvae DNA and provides an estimate of DNA copy number present in a sample without sorting the plankton sample visually. The assay was tested on DNA extracted from whole red king crab larvae and plankton samples seeded with whole larvae, and it detected DNA copies equivalent to 1/10,000th of a larva and 1 crab larva/5mL sieved plankton, respectively. The real-time polymerase chain reaction assay can be used to screen plankton samples for larvae in a fraction of the time required for traditional microscopial methods, which offers advantages for stock assessment methodologies for red king crab as well as a rapid and reliable method to assess abundance of red king crab larvae as needed to improve the understanding of life history and population processes, including larval population dynamics.

Journal of Shellfish Research↗

USGS2012

A shell-neutral modeling approach yields sustainable oyster harvest estimates: a retrospective analysis of the Louisiana state primary seed grounds

A numerical model is presented that defines a sustainability criterion as no net loss of shell, and calculates a sustainable harvest of seed (<75 mm) and sack or market oysters (≥75 mm). Stock assessments of the Primary State Seed Grounds conducted east of the Mississippi from 2009 to 2011 show a general trend toward decreasing abundance of sack and seed oysters. Retrospective simulations provide estimates of annual sustainable harvests. Comparisons of simulated sustainable harvests with actual harvests show a trend toward unsustainable harvests toward the end of the time series. Stock assessments combined with shell-neutral models can be used to estimate sustainable harvest and manage cultch through shell planting when actual harvest exceeds sustainable harvest. For exclusive restoration efforts (no fishing allowed), the model provides a metric for restoration success-namely, shell accretion. Oyster fisheries that remove shell versus reef restorations that promote shell accretion, although divergent in their goals, are convergent in their management; both require vigilant attention to shell budgets.

Journal of Shellfish Research↗

USGS2013

Predicting the effects of proposed Mississippi River diversions on oyster habitat quality; application of an oyster habitat suitability index model

In an attempt to decelerate the rate of coastal erosion and wetland loss, and protect human communities, the state of Louisiana developed its Comprehensive Master Plan for a Sustainable Coast. The master plan proposes a combination of restoration efforts including shoreline protection, marsh creation, sediment diversions, and ridge, barrier island, and hydrological restoration. Coastal restoration projects, particularly the large-scale diversions of fresh water from the Mississippi River, needed to supply sediment to an eroding coast potentially impact oyster populations and oyster habitat. An oyster habitat suitability index model is presented that evaluates the effects of a proposed sediment and freshwater diversion into Lower Breton Sound. Voluminous freshwater, needed to suspend and broadly distribute river sediment, will push optimal salinities for oysters seaward and beyond many of the existing reefs. Implementation and operation of the Lower Breton Sound diversion structure as proposed would render about 6,173 ha of hard bottom immediately east of the Mississippi River unsuitable for the sustained cultivation of oysters. If historical harvests are to be maintained in this region, a massive and unprecedented effort to relocate private leases and restore oyster bottoms would be required. Habitat suitability index model results indicate that the appropriate location for such efforts are to the east and north of the Mississippi River Gulf Outlet.

Louisiana↗

USGS2015

Distribution, abundance, and habitat associations of a large bivalve (Panopea generosa) in a eutrophic, fjord estuary

Marine bivalves are important ecosystem constituents and frequently support valuable fisheries. In many nearshore areas, human disturbance—including declining habitat and water quality—can affect the distribution and abundance of bivalve populations, and complicate ecosystem and fishery management assessments. Infaunal bivalves, in particular, are frequently cryptic and difficult to detect; thus, assessing potential impacts on their populations requires suitable, scalable methods for estimating abundance and distribution. In this study, population size of a common benthic bivalve (the geoduck Panopea generosa ) is estimated with a Bayesian habitat-based model fit to scuba and tethered camera data in Hood Canal, a fjord basin in Washington state. Densities declined more than two orders of magnitude along a north—south gradient, concomitant with patterns of deepwater dissolved oxygen, and intensity and duration of seasonal hypoxia. Across the basin, geoducks were most abundant in loose, unconsolidated, sand substrate. The current study demonstrates the utility of using scuba, tethered video, and habitat models to estimate the abundance and distribution of a large infaunal bivalve at a regional (385-km 2 ) scale.

Washington↗

USGS2015

Ecological effects of the harvest phase of geoduck clam (Panopea generosa Gould, 1850) aquaculture on infaunal communities in southern Puget Sound, Washington USA.

Intertidal aquaculture for geoducks ( Panopea generosa Gould, 1850) is expanding in southern Puget Sound, Washington, where gently sloping sandy beaches are used for field culture. Geoduck aquaculture contributes significantly to the regional economy, but has become controversial because of a range of unresolved questions involving potential biological impacts on marine ecosystems. From 2008 through 2012, the authors used a “before-after-control-impact” experimental design, emphasizing spatial scales comparable with those used by geoduck culturists to evaluate the effects of harvesting market-ready geoducks on associated benthic infaunal communities. Infauna were sampled at three different study locations in southern Puget Sound at monthly intervals before, during, and after harvests of clams, and along extralimital transects extending away from the edges of cultured plots to assess the effects of harvest activities in adjacent uncultured habitat. Using multivariate statistical approaches, strong seasonal and spatial signals in patterns of abundance were found, but there was scant evidence of effects on the community structure associated with geoduck harvest disturbances within cultured plots. Likewise, no indications of significant “spillover” effects of harvest on uncultured habitat adjacent to cultured plots were noted. Complementary univariate approaches revealed little evidence of harvest effects on infaunal biodiversity and indications of modest effects on populations of individual infaunal taxa. Of 10 common taxa analyzed, only three showed evidence of reduced densities, although minor, after harvests whereas the remaining seven taxa indicated either neutral responses to harvest disturbances or increased abundance either during or in the months after harvest events. It is suggested that a relatively active natural disturbance regime, including both small-scale and large-scale events that occur with comparable intensity but more frequently than geoduck harvest events in cultured plots, has facilitated assemblage-level infaunal resistance and resilience to harvest disturbances.

Washington↗

USGS2015

Effects of geoduck (Panopea generosa) aquaculture on resident and transient macrofauna communities of Puget Sound, Washington, USA

In Washington state, commercial culture of geoducks ( Panopea generosa ) involves large-scale out-planting of juveniles to intertidal habitats, and installation of PVC tubes and netting to exclude predators and increase early survival. Structures associated with this nascent aquaculture method are examined to determine whether they affect patterns of use by resident and transient macrofauna. Results are summarized from regular surveys of aquaculture operations and reference beaches in 2009 to 2011 at three sites during three phases of culture: (1) pregear (-geoducks, -structure), (2) gear present (+geoducks, +structures), and (3) postgear (+geoducks, -structures). Resident macroinvertebrates (infauna and epifauna) were sampled monthly (in most cases) using coring methods at low tide during all three phases. Differences in community composition between culture plots and reference areas were examined with permutational analysis of variance and homogeneity of multivariate dispersion tests. Scuba and shoreline transect surveys were used to examine habitat use by transient fish and macroinvertebrates. Analysis of similarity and complementary nonmetric multidimensional scaling were used to compare differences between species functional groups and habitat type during different aquaculture phases. Results suggest that resident and transient macrofauna respond differently to structures associated with geoduck aquaculture. No consistent differences in the community of resident macrofauna were observed at culture plots or reference areas at the three sites during any year. Conversely, total abundance of transient fish and macroinvertebrates were more than two times greater at culture plots than reference areas when aquaculture structures were in place. Community composition differed (analysis of similarity) between culture and reference plots during the gear-present phase, but did not persist to the next farming stage (postgear). Habitat complexity associated with shellfish aquaculture may attract some structure-associated transient species observed infrequently on reference beaches, and may displace other species that typically occur in areas lacking epibenthic structure. This study provides a first look at the effects of multiple phases of geoduck farming on macrofauna, and has important implications for the management of a rapidly expanding sector of the aquaculture industry.

Washington↗

USGS2015

Preliminary characterization of digestive enzymes in freshwater mussels

Resource managers lack an effective chemical tool to control the invasive zebra mussel Dreissena polymorpha . Zebra mussels clog water intakes for hydroelectric companies, harm unionid mussel species, and are believed to be a reservoir of avian botulism. Little is known about the digestive physiology of zebra mussels and unionid mussels. The enzymatic profile of the digestive glands of zebra mussels and native threeridge ( Amblema plicata ) and plain pocketbook mussels ( Lampsilis cardium ) are characterized using a commercial enzyme kit, api ZYM, and validated the kit with reagent-grade enzymes. A linear correlation was shown for only one of nineteen enzymes, tested between the api ZYM kit and a specific enzyme kit. Thus, the api ZYM kit should only be used to make general comparisons of enzyme presence and to observe trends in enzyme activities. Enzymatic trends were seen in the unionid mussel species, but not in zebra mussels sampled 32 days apart from the same location. Enzymatic classes, based on substrate, showed different trends, with proteolytic and phospholytic enzymes having the most change in relative enzyme activity.

Journal of Shellfish Research↗

USGS2016

Increased temperatures combined with lowered salinities differentially impact oyster size class growth and mortality

Changes in the timing and interaction of seasonal high temperatures and low salinities as predicted by climate change models could dramatically alter oyster population dynamics. Little is known explicitly about how low salinity and high temperature combinations affect spat (<25mm), seed (25–75mm), andmarket (>75mm) oyster growth and mortality. Using field and laboratory studies, this project quantified the combined effects of extremely low salinities (<5) and high temperatures (>30°C) on growth and survival of spat, seed, andmarket-sized oysters. In 2012 and 2013, hatchery-produced oysters were placed in open and closed cages at three sites in Breton Sound, LA, along a salinity gradient that typically ranged from 5 to 20. Growth and mortality were recorded monthly. Regardless of size class, oysters at the lowest salinity site (annualmean = 4.8) experienced significantly highermortality and lower growth than oysters located in higher salinity sites (annual means = 11.1 and 13.0, respectively); furthermore, all oysters in open cages at the two higher salinity sites experienced higher mortality than in closed cages, likely due to predation. To explicitly examine oyster responses to extreme low salinity and high temperature combinations, a series of laboratory studies were conducted. Oysters were placed in 18 tanks in a fully crossed temperature (25°C, 32°C) by salinity (1, 5, and 15) study with three replicates, and repeated at least twice for each oyster size class. Regardless of temperature, seed and market oysters held in low salinity tanks (salinity 1) experienced 100% mortality within 7 days. In contrast, at salinity 5, temperature significantly affected mortality; oysters in all size classes experienced greater than 50%mortality at 32°C and less than 40%mortality at 25°C. At the highest salinity tested (15), only market-sized oysters held at 32°C experienced significant mortality (>60%). These studies demonstrate that high water temperatures (>30°C) and low salinities (<5) negatively impact oyster growth and survival differentially and that high temperatures alone may negatively impact market-sized oysters. It is critical to understand the potential impacts of climate and anthropogenic changes on oyster resources to better adapt and manage for long-term sustainability.

Louisiana↗

USGS2016

Physiology of the invasive apple snail Pomacea maculata : tolerance to low temperatures

Apple snails of the genus Pomacea native to South America have invaded and become established in Europe, Asia, and the United States. Both the channeled apple snail Pomacea canaliculata and the island apple snail Pomacea maculata have been reported in the United States. The two species are difficult to distinguish using morphological characters, leading to uncertainty about the identity of the animals from populations in the United States. Because the snails are subtropical, their tolerance of low temperatures is a critical factor in limiting the spread of the animals from present localities along the coast of the Gulf of Mexico to more northern areas. The tolerance of P. maculata collected in Louisiana to temperatures as low as 0°C was examined. There was no mortality among animals maintained in water at temperatures of 20°C or 15°C for 10 days. Survival of animals during a 10-day exposure to water at temperatures 10°C and 5°C was 50%. The LD 50 for a 10-day exposure was 7°C. Snails did not survive more than 5 days in liquid water at 0°C. Ammonia excretion by animals in temperatures of 20°C and 15°C was comparable to values reported for freshwater gastropods; at very low temperatures, excretion of ammonia was decreased. There was no difference in the mean values of the osmolality of the hemolymph of animals exposed to 20°C, 15°C and 10°C for 10 days. Sequencing of mitochondrial cytochrome oxidase 1 identified the animals in the Louisiana population used in this study as P. maculata.

Louisana↗

USGS2017

Suitability of oyster restoration sites along the Louisiana coast: Examining site and stock × site interaction

Recognition of the global loss of subtidal oyster reefs has led to a rise in reef restoration efforts, including in the Gulf of Mexico. Created reef success depends entirely on selecting a location that supports long-term oyster growth and survival, including the recruitment and survival of on-reef oysters. Significant changes in estuarine salinity through management of freshwater inflows and through changed precipitation patterns may significantly impact the locations of optimal oyster restoration sites. These rapid shifts in conditions necessitate a need to better understand both impacts to on-reef oyster growth and population development, and variation in oyster stock performance. Oyster growth, mortality, condition, and disease prevalence were examined in three different stocks of oysters located in protected cages, as well as oyster recruitment and mortality on experimental reef units in three different locations representing a salinity gradient, along the Louisiana Gulf coast in 2011 and 2012. Over a 2-y period, the high-salinity site had highest oyster growth rate in protected cages but demonstrated the least likelihood for reef development based on on-reef oyster population failure, likely because of predation-related mortality (high recruitment and 100% mortality). In contrast, the midsalinity site with moderate oyster growth and on-reef recruitment and low mortality demonstrated a higher likelihood for reef development. The lowest salinity site exhibited extreme variability in all oyster responses between years because of extreme variation in environmental conditions during the study, indicating a low likelihood of long-term reef development. Whereas limited differences in stock performance between sites were found, the range of site environmental conditions tested was ultimately much lower than expected and may not have provided a wide enough range of conditions. In areas with limited, low recruitment, or rapidly changing environmental conditions, seeding with stocks selected for best growth and survival under expected future environmental conditions could better ensure reef development by using oyster populations best suited to the predicted conditions. With rapidly changing estuarine conditions from anthropogenic activities and climate change, siting of oyster reef restoration incorporating both oyster population dynamics and in situ biotic and abiotic interactions is critical in better directing site selection for reef restoration efforts.

Louisiana↗

USGS2017

Endozoicomonas dominates the gill and intestinal content microbiomes of Mytilus edulis from Barnegat Bay, New Jersey

Blue mussels, Mytilus edulis, Linnaeus 1758 from southern Barnegat Bay, New Jersey were examined to determine the make-up of the normal blue mussel microbiome. Sequencing of 16S ribosomal DNA amplicons from gill and intestinal content microbiomes using the Illumina® MiSeq platform yielded 1,276,161 paired end sequence reads from the gill libraries and 1,092,333 paired end sequence reads from the intestinal content libraries. General bioinformatic analyses were conducted with the open-source packages Qiime and Mothur. Phylotype assignments to the genus level were made using the commercial One Codex platform. This resulted in 1,697,852 gill and 988,436 intestinal content sequences being classified to genus. A majority of these (67.6% and 37.2% respectively) were assigned to a single operational taxonomic unit (Mytilus edulis Symbiont, MeS) that has homologies with other recently described Endozoicomonas pathogens and symbionts of marine invertebrates. MeS shares 98% identity with an uncultured bacterium from the gill tissue of an invasive indo-Pacific oyster and with HQE1 and HQE2 isolated from the sea squirt, Styela clava. Other than MeS, most of the detected bacterial species are known from marine sediments and seawater.

New Jersey↗