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USGS2014

Can they dig it? Functional morphology and semifossoriality among small-eared shrews, genus Cryptotis (Mammalia, Soricidae)

Small-eared shrews (Mammalia: Soricidae: Cryptotis ), exhibit modifications of the forelimb skeleton that have been interpreted as adaptations for semifossoriality. Most species inhabit remote regions, however, and their locomotory and foraging behaviors remain mostly speculative. To better understand the morphological modifications in the absence of direct observations, we quantified variation in these species by measuring 151 individuals representing 18 species and populations of Cryptotis and two species of moles (Talpidae) for comparison. From our measurements, we calculated 22 indices, most of which have been used previously to characterize substrate use among rodents and other taxa. We analyzed the indices using 1) average percentile ranks, 2) principal components analysis, and 3) cluster analysis. From these analyses, we determined that three basic modes of substrate adaptation are present within Cryptotis : 1) a primarily terrestrial mode, with species that are capable of burrowing, but lack adaptations to increase digging efficiency, 2) a semifossorial mode, with species whose forelimbs bones show strong muscle attachment areas and increased mechanical advantage, and 3) an intermediate mode. In addition to identifying new morphological characters and contributing to our understanding of the functional morphology of soricids, these analyses provide additional insight into the ecology of the species of interest.

Journal of Morphology↗

USGS2015

Functional skeletal morphology and its implications for locomotory behavior among three genera of myosoricine shrews (Mammalia: Eulipotyphla: Soricidae)

Myosoricinae is a small clade of shrews (Mammalia, Eulipotyphla, Soricidae) that is currently restricted to the African continent. Individual species have limited distributions that are often associated with higher elevations. Although the majority of species in the subfamily are considered ambulatory in their locomotory behavior, species of the myosoricine genus Surdisorex are known to be semifossorial. To better characterize variation in locomotory behaviors among myosoricines, we calculated 32 morphological indices from skeletal measurements from nine species representing all three genera that comprise the subfamily (i.e., Congosorex , Myosorex , Surdisorex ) and compared them to indices calculated for two species with well-documented locomotory behaviors: the ambulatory talpid Uropsilus soricipes and the semifossorial talpid Neurotrichus gibbsii . We summarized the 22 most complete morphological variables by 1) calculating a mean percentile rank for each species and 2) using the first principal component from principal component analysis of the indices. The two methods yielded similar results and indicate grades of adaptations reflecting a range of potential locomotory behaviors from ambulatory to semifossorial that exceeds the range represented by the two talpids. Morphological variation reflecting grades of increased semifossoriality among myosoricine shrews is similar in many respects to that seen for soricines, but some features are unique to the Myosoricinae.

Journal of Morphology↗

USGS2005

Skeletal morphology of the forefoot in shrews (Mammalia: Soricidae) of the genus Cryptotis, as revealed by digital x-rays

Variation in the forefoot skeleton of small-eared shrews (family Soricidae, genus Cryptotis ) has been previously documented, but the paucity of available skeletons for most taxa makes assessment of the degrees of intraspecific and interspecific variation difficult. We used a digital X-ray system to extract images of the forefoot skeleton from 101 dried skins of eight taxa (seven species, including two subspecies of one species) of these shrews. Lengths and widths of each of the four bones of digit III were measured directly from the digital images, and we used these data to quantify variation within and among taxa. Analysis of the images and measurements showed that interspecific variation exceeds intraspecific variation. In fact, most taxa could be distinguished in multivariate and some bivariate plots. Our quantitative data helped us define a number of specific forefoot characters that we subsequently used to hypothesize evolutionary relationships among the taxa using the exhaustive search option in PAUP, a computer program for phylogenetic analysis. The resulting trees generally concur with previously published evolutionary hypotheses for small-eared shrews. Cryptotis meridensis , a taxon not previously examined in recent phylogenies, is rooted at the base of the branch leading to the C. mexicana group of species. The position of this species suggests that the mostly South American C. thomasi group shares an early ancestor with the C. mexicana group.

Journal of Morphology↗

USGS2021

Morphology and composition of Goldeye (Hiodontidae; Hiodon alosoides) otoliths

We provide up-to-date morphological and compositional data on otoliths of the osteoglossomorph Goldeye ( Hiodon alosoides ). Using computed tomography (CT) X-ray, we documented the location of each of the three pairs of otoliths (lapilli, sagittae, and asterisci) in relation to the swim bladder, which extended forward in close proximity to the sagittae and asterisci. The lappili were the largest otoliths in terms of surface area and volume, but the sagittae were highly modified, appearing spiral in shape when viewed dorsally, with a surface area to volume ratio more than double that of the lapilli. Using scanning electron microscopy, the surface of each otolith was viewable in great detail, and small otoconia (~10.5 μm diameter) were observed on each, but were most numerous on the sagittae. On scanning electron micrographs, the sagittae appeared to be bi-lobed, with asymmetrical lobes each oriented in the same general direction. Using neutron and X-ray diffraction methods, we found three polymorphs of calcium carbonate crystals (aragonite, vaterite, and calcite), sometimes all within the same otolith. However, in general, lapilli and sagittae were composed predominately of aragonite whereas asterisci were composed chiefly of vaterite. With these results, we provide information on a unique species, whose inclusion in future studies would benefit our understanding of fish hearing, fish evolution, and fisheries ecology.

Journal of Morphology↗

USGS2005

Formation and regression of the corpus luteum of the American alligator

Luteal morphology of the American alligator is unique when compared to other reptiles but is similar to that of its phylogenetic relatives, the birds. The theca is extensively hypertrophied, but the granulosa never fills the cavity formed following the ovulation of the ovum. The formation of the corpus luteum (CL) is correlated with elevated plasma progesterone concentrations, which decline dramatically after oviposition with the onset of luteolysis. Unlike those of most other reptiles, the central luteal cell mass is composed of two cell types; one presumably is derived from the granulosa, whereas the other is from the theca interna. Both cell types are present throughout gravidity but only one cell type is seen during mid to late luteolysis. A significant decline in luteal volume occurs following oviposition and continues throughout the post-oviposition period. The fastest decline in luteal volume occurs in the month immediately after oviposition; this rate then slows. Luteolysis appears to continue for a year or more following oviposition, as distinct structures of luteal origin can still be identified in animals 9 months after oviposition. The size of persistent CL can be used to determine whether a given female oviposited during the previous nesting season. Females with CL having volumes greater than 0.2 cm 2 or CL diameters greater than 0.4 cm were active the previous season.

Journal of Morphology↗

USGS2001

Avian furcula morphology may indicate relationships of flight requirements among birds

This study examined furcula (wishbone) shape relative to flight requirements. The furculae from 53 museum specimens in eight orders were measured: 1) three-dimensional shape (SR) as indicated by the ratio of the direct distance between the synostosis interclavicularis and the ligamentous attachment of one of its clavicles to the actual length of the clavicle between those same two points, and 2) curvature within the primary plane (LR) as indicated by the ratio of the length of the clavicle to the sum of the orthogonal distances between the same points using a projected image. Canonical discriminant analysis of these ratios placed the individuals into a) one of four general flight categories and b) one of eight taxonomic orders. The four flight categories were defined as: i) soaring with no flapping, ii) flapping with no soaring, iii) subaqueous (i.e., all wingbeats taking place under water), and iv) partial subaqueous (i.e., wingbeats used for both aerial and submerged flapping). The error rate for placement of the specimens in flight categories was only 26.4%, about half of the error rate for placement in taxonomic orders (51.3%). Subaqueous fliers (penguins, great auks) have furculae that are the most V-shaped. Partial subaqueous fliers (alcids, storm petrels) have furculae that are more U-shaped than the subaqueous fliers but more V-shaped than the aerial flapping fliers. The partial subaqueous fliers have furculae that are also the most anteriorly curved, possibly increasing protraction capability by changing the angle of applied force and increasing attachment area for the origin of the sternobrachialis pectoralis. The increased protraction capability can counteract profile drag, which is greater in water than in air due to the greater density of water. Soaring birds have furculae that are more U-shaped or circular than those of flapping birds and have the smallest range of variation. These results indicate that the shape of the furcula is functionally related to general differences in flight requirements and may be used to infer relationships of these requirements among birds.

Journal of Morphology↗

USGS2006

Morphometric discrimination of early life stage Lampetra tridentata and L richardsoni (Petromyzonidae) from the Columbia river basin

The effectiveness of morphometric and meristic characteristics for taxonomic discrimination of Lampetra tridentata and L. richardsoni (Petromyzonidae) during embryological, prolarval, and early larval stages (i.e., age class 1) were examined. Mean chorion diameter increased with time from fertilization to hatch and was significantly greater for L. tridentata than for L. richardsoni at 1, 8, and 15 days postfertilization. Lampetra tridentata larvae had significantly more trunk myomeres than L. richardsoni; however, trunk myomere numbers were highly variable within species and deviated from previously published data. Multivariate examinations of prolarval and larval L. tridentata (7.2-11.0 mm; standard length) and L. richardsoni (6.6-10.8 mm) were conducted based on standard length and truss element lengths established from eight homologous landmarks. Principal components analysis indicated allometric relationships among the morphometric characteristics examined. Changes in body shape were indicated by groupings of morphometric characteristics associated with body regions (e.g., oral hood, branchial region, trunk region, and tail region). Discriminant function analysis using morphometric characteristics was successful in classifying a large proportion (>94.7%) of the lampreys sampled.

Journal of Morphology↗

USGS2011

Microanatomy of passerine hard-cornified tissues: Beak and claw structure of the black-capped chickadee (Poecile atricapillus)

The microanatomy of healthy beaks and claws in passerine birds has not been well described in the literature, despite the importance of these structures in avian life. Histological processing of hard‐cornified tissues is notoriously challenging and only a few reports on effective techniques have been published. An emerging epizootic of beak deformities among wild birds in Alaska and the Pacific Northwest region of North America recently highlighted the need for additional baseline information about avian hard‐cornified structures. In this study, we examine the beak and claw of the Black‐capped Chickadee ( Poecile atricapillus ), a common North American passerine that is affected by what has been described as “avian keratin disorder.” We use light and scanning electron microscopy and high‐magnification radiography to document the healthy microanatomy of these tissues and identify features of functional importance. We also describe detailed methods for histological processing of avian hard‐cornified structures and discuss the utility of special stains. Results from this study will assist in future research on the functional anatomy and pathology of hard‐cornified structures and will provide a necessary reference for ongoing investigations of avian keratin disorder in Black‐capped Chickadees and other wild passerine species.

Journal of Morphology↗

USGS1997

The genus Krithe (Ostracoda) from the Campanian and Maastrichtian (Upper Cretaceous) of the northern US Gulf Coastal Plain

The ostracode genus Krithe is one of the most common genera in the Upper Cretaceous (late Santonian to Maastrichtian) deposits of the northern Gulf Coastal Plain of North America. Although it is never abundant, the genus occurs in sediments that were deposited under a wide range of palaeoenvironments, including nearshore sandy marls to offshore, nearly pure, chalk. The taxonomy of this taxon has been problematical, and what is herein considered to be a single species, K. cushmani, has been referred to in the literature under five different names. Two morphotypes were observed: relatively large individuals with 'mushroom'-shaped vestibules collected from chalk, and smaller individuals with pocket-shaped vestibules collected from nearshore deposits. Species of Krithe have been hypothesized to be useful in estimating dissolved oxygen concentration in ancient ocean floors, based on details of their morphology. Whereas the relationship between size and environment corroborates with previous predictions (larger individuals live in deeper water), the morphology of the vestibules contradicts predictions (the larger vestibules occur in the nearshore deposits and the smaller, more constricted vestibules occur in the chalk). A causal relationship between environment and morphology is discussed.

Journal of Micropalaeontology↗

USGS1997

Characterization and application of a quantitative DNA marker that discriminates sex in chinook salmon (Oncorhynchus tshawytscha)

A qualitative male-specific DNA marker (OT-24) was amplified by spPCR (single-primer polymerase chain reaction) from chinook salmon (Oncorhynchus tshawytscha) DNA along with several non-sex-linked products. The termini of the male-specific product were sequenced, and a pair of PeR primers were constructed for marker-specific PCR amplification. Dual primer PCR (dpPCR), with the marker-specific primers, amplified a product from both nudes and females. The amount of dpPCR product amplified from males was at least 100-fold greater than that from females. The quantitative difference between males and females was consistent among geographically distinct populations from western U.S. rivers. In addition, DNA sequence analysis indicated that OT-24 was highly conserved among geographically distinct salmon populations. The qualitative spPCR product segregated through several genetic crosses indicating equal sex ratios among progeny. Identification of the male and female juveniles by dpPCR was consistent with the spPCR analysis. There was no tissue specificity observed by spPCR or dpPCR analysis of this marker. A rapid DNA extraction method and dpPCR analysis were used to nonlethally determine sex ratios in wild spring chinook salmon adults, withheld for genetic and behavioral studies, prior to their development of gross sexual differences in their external morphology.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1997

Characterization and application of a quantitative DNA marker that discriminates sex in Chinook salmon ( Oncorhynchus tshawytscha )

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2010

Sapflow and water use of freshwater wetland trees exposed to saltwater incursion in a tidally influenced South Carolina watershed

Sea-level rise and anthropogenic activity promote salinity incursion into many tidal freshwater forested wetlands. Interestingly, individual trees can persist for decades after salt impact. To understand why, we documented sapflow (J s ), reduction in J s with sapwood depth, and water use (F) of baldcypress (Taxodium distichum (L.) Rich.) trees undergoing exposure to salinity. The mean J s of individual trees was reduced by 2.8 g H 2 O??m -2 ??s -1 (or by 18%) in the outer sapwood on a saline site versus a freshwater site; however, the smallest trees, present only on the saline site, also registered the lowest J s . Hence, tree size significantly influenced the overall site effect on J s . Trees undergoing perennial exposure to salt used greater relative amounts of water in outer sapwood than in inner sapwood depths, which identifies a potentially different strategy for baldcypress trees coping with saline site conditions over decades. Overall, individual trees used 100 kg H 2 O??day -1 on a site that remained relatively fresh versus 23.9 kg H 2 O??day -1 on the saline site. We surmise that perennial salinization of coastal freshwater forests forces shifts in individual-tree osmotic balance and water-use strategy to extend survival time on suboptimal sites, which further influences growth and morphology.

South Carolina↗

USGS1986

Analysis of utilization of desert habitats with dynamic simulation

The effects of climate and herbivores on cool desert shrubs in north-western Utah were investigated with a dynamic simulation model. Cool desert shrublands are extensively managed as grazing lands, and are defoliated annually by domestic livestock. A primary production model was used to simulate harvest yields and shrub responses under a variety of climatic regimes and defoliation patterns. The model consists of six plant components, and it is based on equations of growth analysis. Plant responses were simulated under various combinations of 20 annual weather patterns and 14 defoliation strategies. Results of the simulations exhibit some unexpected linearities in model behavior, and emphasize the importance of both the pattern of climate and the level of plant vigor in determining optimal harvest strategies. Model behaviors are interpreted in terms of shrub morphology, physiology and ecology.

Journal of Environmental Management↗

USGS2011

A behavior-oriented dynamic model for sandbar migration and 2DH evolution

A nonlinear model is developed to study the time‐dependent relationship between the alongshore variability of a sandbar, a ( t ), and alongshore‐averaged sandbar position, x c ( t ). Sediment transport equations are derived from energetics‐based formulations. A link between this continuous physical representation and a parametric form describing the migration of sandbars of constant shape is established through a simple transformation of variables. The model is driven by offshore wave conditions. The parametric equations are dynamically coupled such that changes in one term (i.e., x c ) drive changes in the other (i.e., a ( t )). The model is tested on 566 days of data from Palm Beach, New South Wales, Australia. Using weighted nonlinear least squares to estimate best fit model coefficients, the model explained 49% and 41% of the variance in measured x c and a ( t ), respectively. Comparisons against a 1‐D horizontal (1DH) version of the model showed significant improvements when the 2DH terms were included (1DH and 2DH Brier skill scores were −0.12 and 0.42, respectively). Onshore bar migration was not predicted in the 1DH model, while the 2DH model correctly predicted onshore migration in the presence of 2DH morphology and allowed the bar to remain closer to shore for a given amount of breaking, providing an important hysteresis to the system. The model is consistent with observations that active bar migration occurs under breaking waves with onshore migration occurring at timescales of days to weeks and increasing 2DH morphology, while offshore migration occurs rapidly under high waves and coincides with a reduction in 2DH morphology.

Journal of Geophysical Research C: Oceans↗

USGS2010

Implications of stunting on morphology of freshwater fishes

The purpose of this study was to assess morphological differences between stunted and non-stunted white perch Morone americana and green sunfish Lepomis cyanellus. Few female M. americana were captured; thus, morphological differences between adult males and juveniles were assessed for M. americana. Similarly, few immature (juvenile) L. cyanellus were captured for the stunted morphotype; thus, male and female morphological differences were assessed for L. cyanellus. Features of the head tended to be relatively larger in stunted fish of both species, whereas the mid-body tended to be relatively larger in non-stunted M. americana, but not in non-stunted L. cyanellus. Adult and juvenile morphology overlapped considerably in non-stunted M. americana, but there was a clear distinction between adult and juvenile morphology of stunted M. americana. There was little sexual dimorphism in shape in stunted L. cyanellus, whereas sexual dimorphism was evident in non-stunted L. cyanellus. It appears that selective forces imposed by predation and food limitation may contribute to morphological diversification between stunted and non-stunted fishes. ?? 2010 The Authors. Journal compilation ?? 2010 The Fisheries Society of the British Isles.

Journal of Fish Biology↗

USGS2002

Factors controlling storm impacts on coastal barriers and beaches - A preliminary basis for near real-time forecasting

Analysis of ground conditions and meteorological and oceanographic parameters for some of the most severe Atlantic and Gulf Coast storms in the U.S. reveals the primary factors affecting morphological storm responses of beaches and barrier islands. The principal controlling factors are storm characteristics, geographic position relative to storm path, timing of storm events, duration of wave exposure, wind stress, degree of flow confinement, antecedent topography and geologic framework, sediment textures, vegetative cover, and type and density of coastal development. A classification of commonly observed storm responses demonstrates the sequential interrelations among (1) land elevations, (2) water elevations in the ocean and adjacent lagoon (if present), and (3) stages of rising water during the storm. The predictable coastal responses, in relative order from high frequency beach erosion to low frequency barrier inundation, include: beach erosion, berm migration, dune erosion, washover terrace construction, perched fan deposition, sheetwash, washover channel incision, washout formation, and forced and unforced ebb flow. Near real-time forecasting of expected storm impacts is possible if the following information is available for the coast: a detailed morphological and topographic characterization, accurate storm-surge and wave-runup models, the real-time reporting of storm parameters, accurate forecasts of the storm position relative to a particular coastal segment, and a conceptual model of geological processes that encompasses observed morphological changes caused by extreme storms.

Journal of Coastal Research↗

USGS2005

Lagoonal reef accretion and holocene sea-level history from three atolls in the Cook Islands, Central South Pacific

Radiocarbon ages of corals from cores collected at nine drill sites in the lagoons of three atolls (Pukapuka, Rakahanga, Aitutaki, Cook Islands) provide a history of lagoon sedimentation in response to Holocene sea-level rise and stabilization. Holocene lagoonal reefs were established between 8700 and 7800 years B.P. on 130,000-200,000 year-old reef platforms that are presently 7 to 22 m below the floor of the lagoons. Comparison of radiocarbon ages of the deepest corals to published sea-level curves indicate that Holocene reefs colonized these substrates rapidly (<???500 years) after lagoon flooding, in water depths of less than 8 m. Subsequently, reef growth lagged behind sea-level rise until the outer reef rims reached sea level between 5000 and 4000 years B.P. Average vertical sediment accretion rates for the Holocene in the lagoons varied by location (83 ?? 2 to 278 ?? 8 cm/ka) and decreased through the Holocene in six of seven drill holes as the lagoons shallowed and became enclosed by the outer reef. A sample from an emergent (<0.5 m above present mean tide) reef on Rakahanga is 4610 ?? 100 years old, which may indicate a higher middle Holocene relative sea level on Rakahanga. Coral growth in Rakahanga lagoon ceased less than 2000 years ago, but was prolific in the early to middle Holocene. The timing and pattern of Holocene reef development exhibited in the Cook Islands is consistent with other oceanic islands. An assessment of the response of reef development to sea-level change during the Holocene provides a baseline to predict how future sea-level changes may affect the morphology of modern reefs.

Journal of Coastal Research↗

USGS1987

Hydraulics and basin morphometry of the largest flash floods in the conterminous United States

The maximum rainfall-runoff floods measured by indirect methods in small basins (0.39-370 km 2 ) in the conterminous United States are examined. This analysis identified twelve floods that were the largest ever measured. These floods all occurred in semiarid to arid areas. For eleven of the twelve largest rainfall-runoff floods measured in small basins by the slope-area method, values of hydraulic depth; hydraulic radius; width-depth ratio; n value; mean velocity; velocity-head coefficient; Froude number; water-surface, energy, and channel slopes; shear stress; and unit stream power are tabulated. Estimated composite n values weighted by subsection conveyance range from 0.028 to 0.048 with a mean of 0.038. Mean velocities ranged from 3.47 to 9.97 m s −1 . Froude numbers ranged from 0.81 to 2.49, with 9 of 12 floods having values greater than 1.00. Water-surface, energy, and channel slopes vary considerably for each flood. Energy slope always was less than water-surface slope by values of 1–104%. Channel slope was greater than energy slope in eight floods. Shear stresses ranged between 61 and 855 N m −2 , and unit stream power from 212 to 8131 w m −1 . Floods in these small basins produced shear stresses and unit stream powers several hundred times greater than floods in large rivers. Floods on other small streams, with smaller unit discharges, produced greater shear stresses and stream powers. This indicates that the force of a flood is controlled by the depth-slope product, not absolute discharge. In the twelve watersheds studied, basin relief ranged from 165 to 1280 m, elongation ratios ranged from 0.55 to 0.80, the number of first-order streams (basin magnitude) ranged from 10 to 4297, drainage density ranged from 4.1 to 10.9 km km −2 , basin slope ranged from 0.0043 to 0.2486, relief ratio ranged from 0.0097 to 0.34, ruggedness number ranged from 0.69 to 7.17, and first-order channel frequency ranged from 5.1 to 38.6 km −2 . Elongation ratios were larger, and drainage density and first-order channel frequency lower, than other small flash-flood prone basins in the United States. These twelve basins have neither the most favorable morphometric characteristics which contribute to flash-flood peaks, nor did the storms causing these flash floods have the greatest short-duration intensities. Maximum flood peaks originate from an optimal combination of basin morphology and physiography, and storm intensity.

conterminous United States↗