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Effect of passive acoustic sampling methodology on detecting bats after declines from white nose syndrome

Concomitant with the emergence and spread of white-nose syndrome (WNS) and precipitous decline of many bat species in North America, natural resource managers need modified and/or new techniques for bat inventory and monitoring that provide robust occupancy estimates. We used Anabat acoustic detectors to determine the most efficient passive acoustic sampling design for optimizing detection probabilities of multiple bat species in a WNS-impacted environment in New York, USA. Our sampling protocol included: six acoustic stations deployed for the entire duration of monitoring as well as a 4 x 4 grid and five transects of 5-10 acoustic units that were deployed for 6-8 night sample durations surveyed during the summers of 2011-2012. We used Program PRESENCE to determine detection probability and site occupancy estimates. Overall, the grid produced the highest detection probabilities for most species because it contained the most detectors and intercepted the greatest spatial area. However, big brown bats ( Eptesicus fuscus ) and species not impacted by WNS were detected easily regardless of sampling array. Endangered Indiana ( Myotis sodalis ) and little brown ( Myotis lucifugus ) and tri-colored bats ( Perimyotis subflavus ) showed declines in detection probabilities over our study, potentially indicative of continued WNS-associated declines. Identification of species presence through efficient methodologies is vital for future conservation efforts as bat populations decline further due to WNS and other factors.

Journal of Ecology and the Natural Environment

Post-White-nose syndrome trends in Virginia’s cave bats, 2008-2013

Since its 2009 detection in Virginia hibernacula, the fungal pathogen Pseudogymnoascus destructans causing White-nose Syndrome (WNS) has had a marked impact on cave bats locally. From 2008-2013, we documented numeric and physiologic changes in cave bats through fall swarm (FS), early hibernation (EH), and late hibernation (LH) capture and banding surveys at 18 hibernacula in western Virginia. We coupled active surveys with passive biennial winter counts in 2009, 2011, and 2013. We compared individual body mass index (BMI) across years for FS, EH, and LH hibernation to determine if WNS impacts on extant bats would be manifested by changes in body condition (as anecdotally observed elsewhere for WNS-impacted bats) as well as a population reduction. To estimate percent declines in bat presence or relative activity, we used FS capture per-unit-effort data, and the winter hibernacula absolute counts. We captured 4,524 bats of eight species, with species-specific capture success declining by 75-100% post-WNS. Little brown bats (Myotis lucifugus) exhibited the greatest declines in winter hibernacula counts (AVG. = 99.0% decline), followed by tri-colored bats (Perimyotis subflavus; 89.5% decline) and Indiana bats (M. sodalis; 33.5% decline). Graphical analyses of captures-per-trap-hour in FS showed declines for little brown bats, tri-colored bats, and northern long-eared bats (M. septentrionalis), but suggest a modest rebound of Indiana bat numbers. Fall swarm trends in BMI suggested some drops post-WNS exposure, but these trends were not consistent across sexes or seasonal time blocks. Our inconclusive BMI metrics and little brown bat band recapture data suggest little competitive advantage or selection for surviving bats. Lesser (but apparent) declines in Indiana bat numbers mirrors trends seen elsewhere regionally, and band recoveries do show that some individuals are persisting. Additional surveys will determine if bats in Virginia will persist or face extirpation due to presumed low recruitment and survivorship.

Virginia

Effects of microhabitat and large-scale land use on stream salamander occupancy in the coalfields of Central Appalachia

Large-scale coal mining practices, particularly surface coal extraction and associated valley fills as well as residential wastewater discharge, are of ecological concern for aquatic systems in central Appalachia. Identifying and quantifying alterations to ecosystems along a gradient of spatial scales is a necessary first-step to aid in mitigation of negative consequences to aquatic biota. In central Appalachian headwater streams, apart from fish, salamanders are the most abundant vertebrate predator that provide a significant intermediate trophic role linking aquatic and terrestrial food webs. Stream salamander species are considered to be sensitive to aquatic stressors and environmental alterations, as past research has shown linkages among microhabitat parameters, large-scale land use such as urbanization and logging, and salamander abundances. However, there is little information examining these relationships between environmental conditions and salamander occupancy in the coalfields of central Appalachia. In the summer of 2013, 70 sites (sampled two to three times each) in the southwest Virginia coalfields were visited to collect salamanders and quantify stream and riparian microhabitat parameters. Using an information-theoretic framework, effects of microhabitat and large-scale land use on stream salamander occupancy were compared. The findings indicate that Desmognathus spp. occupancy rates are more correlated to microhabitat parameters such as canopy cover than to large-scale land uses. However, Eurycea spp . occupancy rates had a strong association with large-scale land uses, particularly recent mining and forest cover within the watershed. These findings suggest that protection of riparian habitats is an important consideration for maintaining aquatic systems in central Appalachia. If this is not possible, restoration riparian areas should follow guidelines using quick-growing tree species that are native to Appalachian riparian areas. These types of trees would rapidly establish a canopy cover, stabilize the soil, and impede invasive plant species which would, in turn, provide high-quality refuges for stream salamanders.

Journal of Ecology and the Natural Environment

Reduced population variance in strontium isotope values informs domesticated turkey use at Chaco Canyon, New Mexico, USA

Traditionally strontium isotopes (87Sr/86Sr) have been used as a sourcing tool in numerous archaeological artifact classes. The research presented here demonstrates that 87Sr/86Srbioapatite ratios also can be used at a population level to investigate the presence of domesticated animals and methods of management. The proposed methodology combines ecology, isotope geochemistry, and behavioral ecology to assess the presence and nature of turkey (Meleagris gallopavo) domestication. This case study utilizes 87Sr/86Srbioapatite ratios from teeth and bones of archaeological turkey, deer (Odocoileus sp.), lagomorph (Lepus sp. and Sylvilagus sp.), and prairie-dog (Cynomys sp.) from Chaco Canyon, New Mexico, U.S.A. (ca. A.D. 800 – 1250). Wild deer and turkey from the southwestern U.S.A. have much larger home ranges and dispersal behaviors (measured in kilometers) when compared to lagomorphs and prairie dogs (measured in meters). Hunted deer and wild turkey from archaeological contexts at Chaco Canyon are expected to have a higher variance in their 87Sr/86Srbioapatite ratios, when compared to small range taxa (lagomorphs and prairie dogs). Contrary to this expectation, 87Sr/86Srbioapatite values of turkey bones from Chacoan assemblages have a much lower variance than deer and are similar to that of smaller mammals. The sampled turkey values show variability most similar to lagomorphs and prairie dogs, suggesting the turkeys from Chaco Canyon were consuming a uniform diet and/or were constrained within a limited home range, indicating at least proto-domestication. The population approach has wide applicability for evaluating the presence and nature of domestication when combined with paleoecology and behavioral ecology in a variety of animals and environments.

New Mexico

Environmental Escherichia coli : Ecology and public health implications - A review

Escherichia coli is classified as a rod-shaped, Gram-negative bacterium in the family Enterobacteriaceae . The bacterium mainly inhabits the lower intestinal tract of warm-blooded animals, including humans, and is often discharged into the environment through feces or wastewater effluent. The presence of E. coli in environmental waters has long been considered as an indicator of recent fecal pollution. However, numerous recent studies have reported that some specific strains of E. coli can survive for long periods of time, and potentially reproduce, in extra-intestinal environments. This indicates that E. coli can be integrated into indigenous microbial communities in the environment. This naturalization phenomenon calls into question the reliability of E. coli as a fecal indicator bacterium (FIB). Recently, many studies reported that E. coli populations in the environment are affected by ambient environmental conditions affecting their long-term survival. Large-scale studies of population genetics provide the diversity and complexity of E. coli strains in various environments, affected by multiple environmental factors. This review examines the current knowledge on the ecology of E. coli strains in various environments in regards to its role as a FIB and as a naturalized member of indigenous microbial communities. Special emphasis is given on the growth of pathogenic E. coli in the environment, and the population genetics of environmental members of the genus Escherichia . The impact of environmental E. coli on water quality and public health is also discussed.

Journal of Applied Microbiology

The gap between experts, farmers and non-farmers on perceived environmental vulnerability and the influence of values and beliefs

Science has played a mixed role in guiding conservation and sustainability-oriented decision-making by individuals, policymakers, institutions, and governments. Not all science-based conservation and sustainability initiatives that address issues facing humanity and ecosystems and global problems have gained public support. Conservation decisions and policy prescriptions are and may be based on perceptions about and experiences with the environment, local land use, and ecosystems that may not align with or be grounded in science or evidence from experts in the field. Values, beliefs, and perceptions associated with nature play a critical role in how individuals view biodiversity conservation, sustainability, and natural resource management . This study first examines the gap between experts (scientists and other field experts) and the public (farmers and non-farmers) about the state of water and land resources, wildlife and associated habitats, and aquatic biodiversity in the Smoky Hill River Watershed in western Kansas. Second, the study examines the role that values and beliefs play in shaping environmental perceptions for farmers and non-farmers. Analysis confirms that a gap between experts and farmers/non-farmers does exist, especially with respect to the state of the Ogallala Aquifer, playas, rivers and streams, lakes and reservoirs, native grasslands, wildlife habitats, farmland, native fish populations, and wildlife species. Ordered-logistic regression analyses, meanwhile, indicate that farmer and non-farmer perceptions about the state of the local environment are influenced by traditional and self-interested values, as well as environmental values and beliefs, but less so by religiosity and political ideology. Despite broad takeaways, results exhibited heterogeneity across the farmer and non-farmer subpopulations. If environmental professionals cannot align ecological data, stakeholders’ values/perceptions, and policies, then the existing body of technical research and management on sustainability in natural and social sciences may be of little value.

Journal of Environmental Management

Understanding arid environments using fossil rodent middens

American rodent middens have made a more dramatic contribution to understanding past environments and the development of ecological theory than Australian rodent middens. This relates to differences in the natural environment, the landscape histories, the scale and scientific approaches of the researchers. The comparison demonstrates: the power of synoptic perspectives; the value of thorough macrofossil identification in midden analysis and its potential advance in Australia where pollen has dominated analyses, the value of herbaria and reference collections; the potential of environmental databases; the importance of scientific history and 'critical research mass' and; finally, the opportunistic nature of palaeoecological research. ?? 2002 Elsevier Science Ltd.

Journal of Arid Environments

Theory and application of semiochemicals in nuisance fish control

Controlling unwanted, or nuisance, fishes is becoming an increasingly urgent issue with few obvious solutions. Because fish rely heavily on semiochemicals, or chemical compounds that convey information between and within species, to mediate aspects of their life histories, these compounds are increasingly being considered as an option to help control wild fish. Possible uses of semiochemicals include measuring their presence in water to estimate population size, adding them to traps to count or remove specific species of fish, adding them to waterways to manipulate large-scale movement patterns, and saturating the environment with synthesized semiochemicals to disrupt responses to the natural cue. These applications may be especially appropriate for pheromones, chemical signals that pass between members of same species and which also have extreme specificity and potency. Alarm cues, compounds released by injured fish, and cues released by potential predators also could function as repellents and be especially useful if paired with pheromonal attractants in “push-pull” configurations. Approximately half a dozen attractive pheromones now have been partially identified in fish, and those for the sea lamprey and the common carp have been tested in the field with modest success. Alarm and predator cues for sea lamprey also have been tested in the laboratory and field with some success. Success has been hampered by our incomplete understanding of chemical identity, a lack of synthesized compounds, the fact that laboratory bioassays do not always reflect natural environments, and the relative difficulty of conducting trials on wild fishes because of short field seasons and regulatory requirements. Nevertheless, workers continue efforts to identify pheromones because of the great potential elucidated by insect control and the fact that few tools are available to control nuisance fish. Approaches developed for nuisance fish also could be applied to valued fishes, which suffer from a lack of powerful management tools.

Journal of Chemical Ecology

Behavior of steelhead fry in a laboratory stream is affected by fish density but not rearing environment

We quantified the aggression, feeding, dominance, position choice, and territory size of naturally reared steelhead Oncorhynchus mykiss fry stocked with two types of hatchery-reared fry (from conventional and enriched rearing environments) at two densities in experimental flumes to determine how rearing environment and fish density affect the behavior of steelhead fry. We found that fry density had a significant effect on most response variables but that rearing treatment did not. The rates of threats and attacks were positively correlated with fry density, but the overall feeding rate was negatively correlated. Naturally reared fry were dominant more often at low densities, and hatchery-reared fry were dominant more often at high densities. There were no significant effects of hatchery rearing treatment on aggression, feeding, dominance, or territory size. The only significant effect of rearing treatment was on the position of naturally reared fry, which occupied more upstream positions when stocked with conventional than with enriched hatchery-reared fry. Overall, rearing environment had relatively little influence on the behavior of steelhead fry. Our results indicate that stocking hatchery-reared steelhead fry at low densities may have effects on similar-size wild fish comparable to an equivalent increase in the density of wild fish. We suggest that releasing hatchery-reared steelhead fry as a supplementation strategy may have few direct negative ecological effects on wild fry.

North American Journal of Fisheries Management

Toward a scientifically rigorous basis for developing mapped ecological regions.

Despite the wide use of ecological regions in conservation and resource-management evaluations and assessments, a commonly accepted theoretical basis for ecological regionalization does not exist. This fact, along with the paucity of focus on ecological regionalization by professional associations, journals, and faculties, has inhibited the advancement of a broadly acceptable scientific basis for the development, use, and verification of ecological regions. The central contention of this article is that ecological regions should improve our understanding of geographic and ecological phenomena associated with biotic and abiotic processes occurring in individual regions and also of processes characteristic of interactions and dependencies among multiple regions. Research associated with any ecoregional framework should facilitate development of hypotheses about ecological phenomena and dominant landscape elements associated with these phenomena, how these phenomena are structured in space, and how they function in a hierarchy. Success in addressing the research recommendations outlined in this article cannot occur within an ad hoc, largely uncoordinated research environment. Successful implementation of this plan will require activities--coordination, funding, and education--that are both scientific and administrative in nature. Perhaps the most important element of an infrastructure to support the scientific work of ecoregionalization would be a national or international authority similar to the Water and Science Technology Board of the National Academy of Sciences.

Environmental Management

Understanding behavioral responses of fish to pheromones in natural freshwater environments

There is an abundance of experimental studies and reviews that describe odorant-mediated behaviors of fish in laboratory microcosms, but research in natural field conditions has received considerably less attention. Fish pheromone studies in laboratory settings can be highly productive and allow for controlled experimental designs; however, laboratory tanks and flumes often cannot replicate all the physical, physiological and social contexts associated with natural environments. Field experiments can be a critical step in affirming and enhancing understanding of laboratory discoveries and often implicate the ecological significance of pheromones employed by fishes. When findings from laboratory experiments have been further tested in field environments, often different and sometimes contradictory conclusions are found. Examples include studies of sea lamprey (Petromyzon marinus) mating pheromones and fish alarm substances. Here, we review field research conducted on fish pheromones and alarm substances, highlighting the following topics: (1) contradictory results obtained in laboratory and field experiments, (2) how environmental context and physiological status influences behavior, (3) challenges and constraints of aquatic field research and (4) innovative techniques and experimental designs that advance understanding of fish chemical ecology through field research.

Journal of Comparative Physiology A

Exploitation of marine mammals: r-selection of K-strategists?

The importance of marine mammals as predators to the organization of marine communities is poorly known, although in several structurally analogous systems the ecological and evolutionary roles of predators are known to be of considerable importance. Occupation of the marine environment by mammals probably carried physiological constraints for single-young pregnancies thereby limiting all species to low intrinsic rates of population increase. As such, species subjected to high mortality rates from predation or other natural disturbances became extinct; those that survived probably were largely resource limited. In view of this scenario it is suggested that stable populations of marine mammals can be maintained at high levels without being manipulated in most communities. Exploitation probably constitutes a rather dramatic environmental change to marine mammals consequently subjecting them to selective forces fundamentally different from many of those under the influence of which they evolved.

Journal of the Fisheries Research Board of Canada

Mixed responses of tenebrionid beetles to solar energy development in the Mojave Desert

Solar energy development causes land-use change and habitat alteration that may affect desert ecosystems. Tenebrionid beetles have evolved to exploit desert environments and heavily contribute to ecosystem functionality in aridlands, yet their species-specific, ecological responses to solar energy development are unknown. Our objective was to elucidate effects of solar energy development decisions at a solar power facility (392 MW) on a tenebrionid beetle community in the Mojave Desert. Seven years post-construction, we used pitfall traps to collect tenebrionid beetles for one month in treatments representing variably intense site preparation practices and conservation measures, including blading (i.e., bulldozing), mowing, and establishment of undeveloped patches in solar fields, replicated across three power blocks comprising the facility and in undeveloped control sites surrounding the facility. Blading caused significant, deleterious effects on tenebrionid beetle abundance, species richness, and diversity. Ordination revealed apparent overlap of non-bladed treatments and controls, suggesting that intermediate levels of disturbance from less intensive solar energy development decisions may serve to minimize negative effects of solar energy development on tenebrionid communities. Anepsius delicatulus and Triorophus laevis , the two most commonly collected tenebrionids, were significantly more abundant in non-bladed treatments in the solar facility than in undeveloped controls; thus, solar facilities with minimized disturbance to vegetation may provide preferred habitat for certain tenebrionid species. Our results demonstrate the value of understanding variable responses of insects to solar energy development decisions in deserts to inform real-world adaptive management of natural resources during the renewable energy transition.

California

Introduction to the special issue on “Understanding and predicting change in the coastal ecosystems of the northern Gulf of Mexico”

The coastal region of the northern Gulf of Mexico owes its current landscape structure to an array of tectonic, erosional and depositional, climatic, geochemical, hydrological, ecological, and human processes that have resulted in some of the world's most complex, dynamic, productive, and threatened ecosystems. Catastrophic hurricane landfalls, ongoing subsidence and erosion exacerbated by sea-level rise, disintegration of barrier island chains, and high rates of wetland loss have called attention to the vulnerability of northern Gulf coast ecosystems, habitats, built infrastructure, and economy to natural and anthropogenic threats. The devastating hurricanes of 2005 (Katrina and Rita) motivated the U.S. Geological Survey Coastal and Marine Geology Program and partnering researchers to pursue studies aimed at understanding and predicting landscape change and the associated storm hazard vulnerability of northern Gulf coast region ecosystems and human communities. Attaining this science goal requires increased knowledge of landscape evolution on geologic, historical, and human time scales, and analysis of the implications of such changes in the natural and built components of the landscape for hurricane impact susceptibility. This Special Issue of the Journal of Coastal Research communicates northern Gulf of Mexico research results that (1) improve knowledge of prior climates and depositional environments, (2) assess broad regional ecosystem structure and change over Holocene to human time scales, (3) undertake process studies and change analyses of dynamic landscape components, and (4) integrate framework, climate, variable time and spatial scale mapping, monitoring, and discipline-specific process investigations within interdisciplinary studies.

Journal of Coastal Research

Conservation Action Planning: Lessons learned from the St. Marys River watershed biodiversity conservation planning process

Conservation Action Planning (CAP) is an adaptive management planning process refined by The Nature Conservancy (TNC) and embraced worldwide as the Open Standards for the Practice of Conservation. The CAP process facilitates open, multi-institutional collaboration on a common conservation agenda through organized actions and quantified results. While specifically designed for conservation efforts, the framework is adaptable and flexible to multiple scales and can be used for any collaborative planning effort. The CAP framework addresses inception; design and development of goals, measures, and strategies; and plan implementation and evaluation. The specific components of the CAP include defining the project scope and conservation targets; assessing the ecological viability; ascertaining threats and surrounding situation; identifying opportunities and designing strategies for action; and implementing actions and monitoring results. In 2007, TNC and a multidisciplinary graduate student team from the University of Michigan's School of Natural Resources and Environment initiated a CAP for the St. Marys River, the connecting channel between Lake Superior and Lake Huron, and its local watershed. The students not only gained experience in conservation planning, but also learned lessons that notably benefited the CAP process and were valuable for any successful collaborative effort—a dedicated core team improved product quality, accelerated the timeline, and provided necessary support for ongoing efforts; an academic approach in preparation for engagement in the planning process brought applicable scientific research to the forefront, enhanced workshop facilitation, and improved stakeholder participation; and early and continuous interactions with regional stakeholders improved cooperation and built a supportive network for collaboration.

Michigan, Ontario

Disease and infection in the Tetraonidae

Disease is one of many factors advanced to explain the fluctuations of grouse populations, but no profound study of natural disease losses in Tetraonidae exists. The literature contains frequent references to THE grouse disease, although many potential pathogens are listed in numerous surveys and limited investigations, and the relevant data indicate that no single etiologic agent is universally responsible for disease in grouse. Few experimental infections or related studies on parasite biology have been attempted. Well-trained personnel and specialized facilities are required for research and analysis (1) to develop new methods of interpretation to be used with existing census techniques, (2) to conduct intensive studies of ecological factors of host and habitat, and (3) to establish base lines for recognition of deviations from the norm. Disease in wildlife can be controlled only through management procedures based on information concerning the biology of pathogens, hosts, and environments. It cannot be studied as a separate entity if its impact on survival or population fluctuations of grouse is to be correctly assessed.

Journal of Wildlife Management

The National Climate Change and Wildlife Science Center annual report for 2013

In 2008, Congress created the National Climate Change and Wildlife Science Center (NCCWSC) within the U.S. Geological Survey (USGS). The center was formed to respond to the demands of natural resource managers for rigorous scientific information and effective tools for assessing and responding to climate change. Located at the USGS National Headquarters in Reston, Va., the NCCWSC has invested more than $93 million (through FY13) in cutting-edge climate change research and, in response to Secretarial Order No. 3289, established and is managing eight regional Department of Interior (DOI) Climate Science Centers (CSCs). In 2013: The DOI CSCs awarded nearly $7 million in funding to universities and other partners for climate and land-use change research. The scientific work of the NCCWSC-CSC enterprise moved toward projects that focus on ‘Science Infrastructure and Capacity Building’ and ‘Thematic Science’. A permanent director, David Helweg, Ph.D., was hired for the Pacific Islands CSC (PI CSC), completing the CSC leadership team. Staff scientists were hired at the Alaska (AK), Northeast (NE), and Southeast (SE) CSCs. Each of the eight CSCs completed the formation of regional Stakeholder Advisory Committees (SACs) and a national advisory committee (ACCCNRS) was created to oversee the NCCWSC-CSC enterprise. NCCWSC staff worked on creating a searchable public database on climate change vulnerability assessments. NCCWSC scientists authored articles in a special issue of the Ecological Society of America’s journal Frontiers in Ecology and the Environment, which was devoted to an assessment of climate change effects on biodiversity and ecosystems, and the consequences for people. Learn more about these achievements in The National Climate Change and Wildlife Science Center Annual Report for 2013 .

Circular

Ecological impacts of wheat seeding after a Sierra Nevada wildfire

The Highway Fire burned 1680 ha of mixed ponderosa pine–oak–chaparral in the newly created Giant Sequoia National Monument and the adjacent Sequoia National Forest of Fresno County, California in August 2001. The USDA Forest Service Burned Area Emergency Rehabilitation (BAER) program recommended that portions of the burned forest be seeded with a non-persistent variety of wheat at a density of 157 kg ha –1 (140 lb/ac). The present study compared the vascular plant diversity and cover in seeded and unseeded parts of this burn to evaluate the ecological impact of seeding an alien grass. In the first post-fire growing season, the natural regeneration of unseeded control sites averaged ~55% ground surface covered. Wheat seeding enhanced the ground cover, averaging 95% ground surface cover. Wheat was the dominant species on the seeded sites, comprising 67% of the total cover. Dominance–diversity curves were markedly affected by the seeding and indicated a disruption in the natural ecological structure of these communities. On seeded sites, wheat dominated and all other species were poorly represented whereas, on unseeded control sites, there was a more equitable distribution of species. Correlated with the wheat cover was a significant decrease in species richness at all scales examined. Total species richness was reduced from 152 species across all unseeded sites to 104 species on all seeded sites. Average species richness, at scales from 1 to 1000 m 2 , was 30–40% lower on seeded sites. Species most strongly inhibited were post-fire endemics whose lifecycle is restricted to immediate post-fire environments. Seeded sites had fewer alien species than unseeded sites; however, this may not have any lasting effect since other studies show the primary alien threat is not in the first post-fire year. Seeding was also associated with an order of magnitude drop in Pinus ponderosa seedling recruitment and, coupled with the massive thatch still remaining on the site, it is likely that recruitment will be inhibited in subsequent years.

International Journal of Wildland Fire