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At least 19 recordsLinked to original sources
USGS2012

Community-level response of fishes and aquatic macroinvertebrates to stream restoration in a third-order tributary of the Potomac River, USA

Natural stream channel design principles and riparian restoration practices were applied during spring 2010 to an agriculturally impaired reach of the Cacapon River, a tributary of the Potomac River which flows into the Chesapeake Bay. Aquatic macroinvertebrates and fishes were sampled from the restoration reach, two degraded control, and two natural reference reaches prior to, concurrently with, and following restoration (2009 through 2010). Collector filterers and scrapers replaced collector gatherers as the dominant macroinvertebrate functional feeding groups in the restoration reach. Before restoration, based on indices of biotic integrity (IBI), the restoration reach fish and macroinvertebrate communities closely resembled those sampled from the control reaches, and after restoration more closely resembled those from the reference reaches. Although the macroinvertebrate community responded more favorably than the fish community, both communities recovered quickly from the temporary impairment caused by the disturbance of restoration procedures and suggest rapid improvement in local ecological conditions.

West Virginia↗
USGS2011

The humpbacked species richness-curve: A contingent rule for community ecology

Functional relationships involving species richness may be unimodal, monotonically increasing, monotonically decreasing, bimodal, multimodal, U-shaped, or with no discernable pattern. The unimodal relationships are the most interesting because they suggest dynamic, nonequilibrium community processes. For that reason, they are also contentious. In this paper, we provide a wide-ranging review of the literature on unimodal (humpbacked) species richness-relationships. Though not as widespread as previously thought, unimodal patterns of species richness are often associated with disturbance, predation and herbivory, productivity, spatial heterogeneity, environmental gradients, time, and latitude. These unimodal patterns are contingent on organism and environment; we examine unimodal species richness-curves involving plants, invertebrates, vertebrates, plankton, and microbes in marine, lacustrine, and terrestrial habitats. A goal of future research is to understand the contingent patterns and the complex, interacting processes that generate them.

International Journal of Ecology↗
USGS2024

Browsing the literature

For this edition of Browsing the Literature, we have two new papers from Rangeland Ecology & Management, a series of basic ecology papers with an international scope from journals such as the Proceedings of the National Academy of Sciences (USA), Science, and Nature, and several papers advancing our understanding of drought and carbon at global scales. Additionally, several papers on sagebrush-steppe rangelands are covered with transferable insights to other rangeland types.

Rangelands↗
USGS2007

River enhancement in the Upper Mississippi River basin: Approaches based on river uses, alterations, and management agencies

The Upper Mississippi River is characterized by a series of locks and dams, shallow impoundments, and thousands of river channelization structures that facilitate commercial navigation between Minneapolis, Minnesota, and Cairo, Illinois. Agriculture and urban development over the past 200 years have degraded water quality and increased the rate of sediment and nutrient delivery to surface waters. River enhancement has become an important management tool employed to address causes and effects of surface water degradation and river modification in the Upper Mississippi River Basin. We report information on individual river enhancement projects and contrast project densities, goals, activities, monitoring, and cost between commercially non-navigated and navigated rivers (Non-navigated and Navigated Rivers, respectively). The total number of river enhancement projects collected during this effort was 62,108. Cost of all projects reporting spending between 1972 and 2006 was about US$1.6 billion. Water quality management was the most cited project goal within the basin. Other important goals in Navigated Rivers included in-stream habitat improvement and flow modification. Most projects collected for Non-navigated Rivers and their watersheds originated from the U.S. Department of Agriculture (USDA). The U.S. Army Corps of Engineers and the USDA were important sources for projects in Navigated Rivers. Collaborative efforts between agencies that implement projects in Non-navigated and Navigated Rivers may be needed to more effectively address river impairment. However, the current state of data sources tracking river enhancement projects deters efficient and broad-scale integration. ?? Journal compilation ?? 2007 Society for Ecological Restoration International.

Restoration Ecology↗
USGS2023

Metabolically diverse microorganisms mediate methylmercury formation under nitrate-reducing conditions in a dynamic hydroelectric reservoir

Brownlee Reservoir is a mercury (Hg)-impaired hydroelectric reservoir that exhibits dynamic hydrological and geochemical conditions and is located within the Hells Canyon Complex in Idaho, USA. Methylmercury (MeHg) contamination in fish is a concern in the reservoir. While MeHg production has historically been attributed to sulfate-reducing bacteria and methanogenic archaea, microorganisms carrying the hgcA gene are taxonomically and metabolically diverse and the major biogeochemical cycles driving mercury (Hg) methylation are not well understood. In this study, Hg speciation and redox-active compounds were measured throughout Brownlee Reservoir across the stratified period in four consecutive years (2016–2019) to identify the location where and redox conditions under which MeHg is produced. Metagenomic sequencing was performed on a subset of samples to characterize the microbial community with hgcA and identify possible links between biogeochemical cycles and MeHg production. Biogeochemical profiles suggested in situ water column Hg methylation was the major source of MeHg. These profiles, combined with genome-resolved metagenomics focused on hgcA -carrying microbes, indicated that MeHg production occurs in this system under nitrate- or manganese-reducing conditions, which were previously thought to preclude Hg-methylation. Using this multidisciplinary approach, we identified the cascading effects of interannual variability in hydrology on the redox status, microbial metabolic strategies, abundance and metabolic diversity of Hg methylators, and ultimately MeHg concentrations throughout the reservoir. This work expands the known conditions conducive to producing MeHg and suggests that the Hg-methylation mitigation efforts by nitrate or manganese amendment may be unsuccessful in some locations.

Idaho↗
USGS2025

Sulfide stress tolerance as a controller of methane production in temperate wetlands

Wetlands are a major source of methane emissions and contribute to the observed increase in atmospheric methane over the last 20 years. Methane production in wetlands is the final step of carbon decomposition performed by anaerobic archaea. Although hydrogen/carbon dioxide and acetate are the substrates most often attributed to methanogenesis, other substrates—such as methylated compounds—may additionally play important roles in driving methane production in wetland systems. Here we conducted mesocosm experiments combined with genome-resolved metatranscriptomics to investigate the impact of diverse methanogenic substrate amendment on methanogenesis in two high methane-emitting wetlands with distinct geochemistry, termed P7 and P8. Methanol amendment resulted in high methane production at both sites, whereas acetate and formate amendment only stimulated methanogenesis in P7 mesocosms, where aqueous sulfide concentrations were lower. In P7 sediments, formate amendment fueled acetogenic microbes that produced acetate, which was subsequently utilized by acetoclastic methanogens. In contrast to expression profiles in P7 mesocosms, active methylotrophic methanogen genomes from P8 showed increased expression of genes related to membrane remodeling and DNA damage repair, indicative of stress tolerance mechanisms to counter sulfide toxicity. Methylotrophic methanogenesis generates higher free energy yields than acetoclastic methanogenesis, which likely enables allocation of more energy toward stress responses. These findings contribute to the growing body of literature highlighting methylotrophic methanogenesis as an important methane production pathway in wetlands. By using less competitive substrates like methanol that provide greater energy yields, methylotrophic methanogens may invest in physiological strategies that provide competitive advantages across a range of environmental stresses.

North Dakota↗
USGS2023

Perspectives on the scientific legacy of J. Philip Grime

Perhaps as much as any other scientist in the 20th century, J.P. Grime transformed the study of plant ecology and helped shepherd the field toward international prominence as a nexus of ideas related to global environmental change. Editors at the Journal of Ecology asked a group of senior plant ecologists to comment on Grime's scientific legacy. This commentary piece includes individual responses of 14 scientists from around the world attesting to Grime's foundational role in plant functional ecology, including his knack for sparking controversy, his unique approach to theory formulation involving clever experiments and standardized trait measurements of large numbers of species, and the continued impact of his work on ecological science and policy.

Journal of Ecology↗
USGS2008

Stress tolerance in plants via habitat-adapted symbiosis

We demonstrate that native grass species from coastal and geothermal habitats require symbiotic fungal endophytes for salt and heat tolerance, respectively. Symbiotically conferred stress tolerance is a habitat-specific phenomenon with geothermal endophytes conferring heat but not salt tolerance, and coastal endophytes conferring salt but not heat tolerance. The same fungal species isolated from plants in habitats devoid of salt or heat stress did not confer these stress tolerances. Moreover, fungal endophytes from agricultural crops conferred disease resistance and not salt or heat tolerance. We define habitat-specific, symbiotically-conferred stress tolerance as habitat-adapted symbiosis and hypothesize that it is responsible for the establishment of plants in high-stress habitats. The agricultural, coastal and geothermal plant endophytes also colonized tomato (a model eudicot) and conferred disease, salt and heat tolerance, respectively. In addition, the coastal plant endophyte colonized rice (a model monocot) and conferred salt tolerance. These endophytes have a broad host range encompassing both monocots and eudicots. Interestingly, the endophytes also conferred drought tolerance to plants regardless of the habitat of origin. Abiotic stress tolerance correlated either with a decrease in water consumption or reactive oxygen sensitivity/generation but not to increased osmolyte production. The ability of fungal endophytes to confer stress tolerance to plants may provide a novel strategy for mitigating the impacts of global climate change on agricultural and native plant communities.The ISME Journal (2008) 2, 404-416; doi:10.1038/ismej.2007.106; published online 7 February 2008. ?? 2008 International Society for Microbial Ecology All rights reserved.

ISME Journal↗
USGS2024

Genetic origins of a resurging lake whitefish, Coregonus clupeaformis, population in the Detroit River, Laurentian Great Lakes

The Detroit River connects Lake Huron and Lake Erie of the Laurentian Great Lakes. The river once supported a substantial lake whitefish ( Coregonus clupeaformis ) fishery until the early 1900s, when habitat loss, pollution, and overfishing contributed to the collapse of the fishery and loss of spawning populations in the river. In the early 1970s, efforts were initiated to improve water and habitat quality, and in December 2005 a spawning male lake whitefish and viable eggs were collected; the first documented evidence of spawning since 1916. Researchers have tracked the spawning magnitude of the lake whitefish population in the Detroit River since 2005 by assessing the number of eggs deposited on egg mats. Genetic analysis of larval fish hatched from eggs collected in the field between 2005 and 2018 was used to determine the relative contributions of Lake Erie and Lake Huron to the resurging population. Over 80% of the hatched larvae had parents originating from Lake Erie in all the years sampled. The estimated number of full-sibling families sampled at Belle Isle was the same in 2010 and 2014 and varied between 2009 and 2016 at Fighting Island. The estimated number of lake whitefish parents at Fighting Island decreased in the most recent collections possibly due to loss of habitat on spawning reefs due to sedimentation. Our results provide additional evidence that restored spawning habitat in the Detroit River is again being used by lake whitefish and continued reproduction at these sites may improve the Great Lakes portfolio of ecological and genetic diversity.

Detroit River↗
USGS2018

Selenium, mercury, and their molar ratios in sportfishes from drinking water reservoirs

Mercury (Hg) bioaccumulates in aquatic ecosystems and may pose a risk to humans who consume fish. Selenium (Se) has the ability to reduce Hg toxicity, but the current guidance for human consumption of fish is based on Hg concentration alone. The purpose of the present study was to examine the relationship between Se and Hg in freshwater sportfish, for which there is a paucity of existing data. We collected three species of fish from different trophic positions from two drinking water reservoirs in central North Carolina, USA, to assess Hg and Se concentrations in relation to fish total length and to compare two measures of the protective ability of Se, the Se:Hg molar ratio and Se health benefit value (HBV Se ), to current guidance for Hg. According to the Se:Hg molar ratio, all of the low trophic position fish sampled and the middle trophic position fish sampled from one of the reservoirs were safe for consumption. The same number of fish were considered safe using the HBV Se . More fish were deemed unsafe when using the Se:Hg molar ratio and HBV Se than were considered unsafe when using the U.S. Environmental Protection Agency (USEPA) Hg threshold. These findings suggest that the measures of Se protection may be unnecessarily conservative or that the USEPA Hg threshold may not be sufficiently protective of human health, especially the health of sensitive populations like pregnant or nursing mothers and young children. Future examination of the Se:Hg molar ratio and HBV Se from a variety of fish tissue samples would help refine the accuracy of these measures so that they may be appropriately utilized in ecological and human health risk assessment.

International Journal of Environmental Research an↗
USGS2026

An overview and participatory framework for choosing spatial boundaries in social–ecological systems modeling

A common challenge when modeling social–ecological systems (SESs) is defining the spatial extent of the system. Boundaries that do not adequately capture both social and ecological processes and their interactions can lead to mischaracterization of the system, while expanding boundaries too widely can impact model complexity and required resources. Socially, boundaries can invoke and influence identity, culture, power, and sense of place. Boundary decisions benefit from flexible, iterative approaches and the expertise of local communities. Here, we use a structured database search supplemented with citation searching to identify and review the literature that addresses choosing or defining spatial boundaries in SESs mapping or modeling and, when applicable, how participatory methods were used in the research process. In a review of the resulting 79 studies, we discovered that pre-existing social or ecological boundaries were used most frequently (36 and 18 publications, respectively). Twenty-one publications combined social and ecological boundaries or data to create custom boundaries, and four studies used an alternative approach to conventional boundaries. Informed by the literature review, we present a general framework for defining boundaries at the outset of SES research. We then connect the framework to a specific case study based on a collaborative project with Tribal, university, and federal scientists to develop a social–ecological climate adaptation plan. We present guiding questions alongside candidate boundaries for our study system and explore the tradeoffs of these boundary options, which can function as a useful template for other social–ecological research collaborations.

ISPRS International Journal of Geo-Information↗
USGS2003

A new pterosaur tracksite from the Jurassic Summerville formation, near Ferron, Utah

Pterosaur tracks (cf. Pteraichnus ) from the Summerville Formation of the Ferron area of central Utah add to the growing record of Pteraichnus tracksites in the Late Jurassic Summerville Formation and time-equivalent, or near time-equivalent, deposits. The site is typical in revealing high pterosaur track densities, but low ichnodiversity suggesting congregations or “flocks” of many individuals. Footprint length varies from 2.0 to 7.0 cms. The ratio of well-preserved pes:manus tracks is about 1:3.4. This reflects a bias in favor of preservation of manus tracks due to the greater weight-bearing role of the front limbs, as noted in other pterosaur track assemblages. The sample also reveals a number of well-preserved trackways including one suggestive of pes-only progression that might be associated with take off or landing, and another that shows pronounced lengthening of stride indicating acceleration. One well-preserved medium-sized theropod trackway ( Therangospodus ) and other larger theropod track casts (cf. Megalosauripus ) are associated with what otherwise appears to be a nearly monospecific pterosaur track assemblage. However, traces of a fifth pes digit suggest some tracks are of rhamphorynchoid rather than pterodactyloid origin, as usually inferred for Pteraichnus . The tracks occur at several horizons in a thin stratigraphic interval of ripple marked sandstones and siltstones. Overall the assemblage is similar to others found in the same time interval in the Western Interior from central and eastern Utah through central and southern Wyoming, Colorado, northeastern Arizona, and western Oklahoma. This vast “ Pteraichnus ichnofacies,” with associated saurischian tracks, remains the only ichnological evidence of pre-Cretaceous pterosaurs in North America and sheds important light on the vertebrate ecology of the Summerville Formation and contiguous deposits.

Utah↗
USGS2023

Ten best practices for effective phenological research

The number and diversity of phenological studies has increased rapidly in recent years. Innovative experiments, field studies, citizen science projects, and analyses of newly available historical data are contributing insights that advance our understanding of ecological and evolutionary responses to the environment, particularly climate change. However, many phenological data sets have peculiarities that are not immediately obvious and can lead to mistakes in analyses and interpretation of results. This paper aims to help researchers, especially those new to the field of phenology, understand challenges and practices that are crucial for effective studies. For example, researchers may fail to account for sampling biases in phenological data, struggle to choose or design a volunteer data collection strategy that adequately fits their project’s needs, or combine data sets in inappropriate ways. We describe ten best practices for designing studies of plant and animal phenology, evaluating data quality, and analyzing data. Practices include accounting for common biases in data, using effective citizen or community science methods, and employing appropriate data when investigating phenological mismatches. We present these best practices to help researchers entering the field take full advantage of the wealth of available data and approaches to advance our understanding of phenology and its implications for ecology.

International Journal of Biometeorology↗
USGS2012

Spring onset variations and trends in the continental United States: past and regional assessment using temperature-based indices

Phenological data are simple yet sensitive indicators of climate change impacts on ecosystems, but observations have not been made routinely or extensively enough to evaluate spatial and temporal patterns across most continents, including North America. As an alternative, many studies use weather-based algorithms to simulate specific phenological responses. Spring Indices (SI) are a set of complex phenological models that have been successfully applied to evaluate variations and trends in the onset of spring across the Northern Hemisphere’s temperate regions. To date, SI models have been limited by only producing output in locations where both the plants’ chilling and warmth requirements are met. Here, we develop an extended form of the SI (abbreviated SI-x) that expands their application into the subtropics by ignoring chilling requirements while still retaining the utility and accuracy of the original SI (now abbreviated SI-o). The validity of the new indices is tested, and regional SI anomalies are explored across the data-rich continental United States. SI-x variations from 1900 to 2010 show an abrupt and sustained delay in spring onset of about 4–8 d (around 1958) in parts of the Southeast and southern Great Plains, and a comparable advance of 4–8 d (around 1984) in parts of the northern Great Plains and the West. Atmospheric circulation anomalies, linked to large-scale modes of variability, exert modest but significant roles in the timing of spring onset across the United States on interannual and longer timescales. The SI-x are promising metrics for tracking spring onset variations and trends in mid-latitudes, relating them to relevant ecological, hydrological, and socioeconomic phenomena, and exploring connections between atmospheric drivers and seasonal timing.

International Journal of Climatology↗
USGS2008

Molecular sequences derived from Paleocene Fort Union Formation coals vs. associated produced waters: Implications for CBM regeneration

Coalbed methane regeneration is of increasing interest, and is gaining global attention with respect to enhancement of gas recovery. The objective of this study is to determine if there are differences in methanogen nucleic acid sequences associated with low rank coals from the Powder River Basin, Wyoming, in comparison with sequences that can be recovered from coal bed-associated produced waters. Based on results obtained to date, the sequences from the coals appear to be associated with putatively deep-rooted thermophilic autotrophic methanogens, whereas the sequences from the waters are associated with thermophilic autotrophic and heterotrophic methanogens. The recovered sequences associated with coal thus appear to be both phylogenetically and functionally distinct from those that are more closely associated with the produced water. To be able to relate such recovered sequences to organisms that might be present and possibly active in these environments, it is suggested that direct observation, followed by isolation and single cell-based physiological/molecular analyses, be used to characterize methanogenic consortia possibly associated with coals and/or produced waters. It is also important to characterize the microenvironment where these microbes might be found, in both ecological and geological contexts, to be able to develop effective, ecologically relevant coalbed methane regeneration processes.

International Journal of Coal Geology↗
USGS2026

Contrasting haemosporidian infections in two ecologically distinct wading birds from breeding colonies in the southeastern United States

Wading birds may serve as ideal hosts for avian hemoparasites, as they are long-lived, undertake extensive movements, form dense breeding colonies, and inhabit water-associated environments that support vectors. Although previous studies have reported parasite species and prevalence in various wading bird species, little is known about their associations with bird behavior and life stage. To address this gap, we examined haemosporidian infections in two ecologically distinct species, white ibis ( Eudocimus albus ) and tricolored heron ( Egretta tricolor ), to explore differences in life stage and movement that may explain prevalence differences. We combined blood screening for hemoparasites with satellite tracking data describing birds’ movement patterns. We screened 95 white ibis (67 juveniles and 28 adults or subadults) and 69 tricolored herons (45 juveniles and 24 adults). We detected a single Haemoproteus plataleae lineage in both species, with higher infection prevalence in white ibis (42.1 %) than in tricolored herons (14.5 %). Among white ibis, adults showed a higher prevalence (67.9 %) than juveniles (31.3 %), whereas in tricolored herons, adults had a prevalence of 8.3 % and juveniles 17.8 %. Non-breeding season movement data showed that white ibis used both freshwater and saline habitats across the southeastern United States, which may also serve as habitats for vectors. In contrast, tricolored herons remained mainly along coastal areas, using saline habitats in the southeastern United States and wintering sites in Central America, which may be less favorable for vectors. Overall, white ibis may serve as major reservoirs and sources of reinfection for H. plataleae , whereas tricolored herons may facilitate parasite dispersal between breeding colonies along the coasts of the southeastern United States and wintering areas in Central America. This study presents the first direct comparison of hemoparasite infections in two ecologically distinct wading birds and highlights movement data as key to explaining infection differences, providing a baseline for future studies.

Alabama↗
USGS2015

Movement analysis of free-grazing domestic ducks in Poyang Lake, China: A disease connection

Previous work suggests domestic poultry are important contributors to the emergence and transmission of highly pathogenic avian influenza throughout Asia. In Poyang Lake, China, domestic duck production cycles are synchronized with arrival and departure of thousands of migratory wild birds in the area. During these periods, high densities of juvenile domestic ducks are in close proximity to migratory wild ducks, increasing the potential for the virus to be transmitted and subsequently disseminated via migration. In this paper, we use GPS dataloggers and dynamic Brownian bridge models to describe movements and habitat use of free-grazing domestic ducks in the Poyang Lake basin and identify specific areas that may have the highest risk of H5N1 transmission between domestic and wild birds. Specifically, we determine relative use by free-grazing domestic ducks of natural wetlands, which are the most heavily used areas by migratory wild ducks, and of rice paddies, which provide habitat for resident wild ducks and lower densities of migratory wild ducks. To our knowledge, this is the first movement study on domestic ducks, and our data show potential for free-grazing domestic ducks from farms located near natural wetlands to come in contact with wild waterfowl, thereby increasing the risk for disease transmission. This study provides an example of the importance of movement ecology studies in understanding dynamics such as disease transmission on a complicated landscape.

Poyang Lake↗
USGS2019

Mapping a keystone shrub species, huckleberry (Vaccinium membranaceum), using seasonal colour change in the Rocky Mountains

Black huckleberries ( Vaccinium membranaceum ) provide a critical food resource to many wildlife species, including apex omnivores such as the grizzly bear ( Ursus arctos ), and play an important socioeconomic role for many communities in western North America, especially indigenous peoples. Remote sensing imagery offers the potential for accurate landscape-level mapping of huckleberries because the shrub changes colour seasonally. We developed two methods, for local and regional scales, to map a shrub species using leaf seasonal colour change from remote sensing imagery. We assessed accuracy with ground-based vegetation surveys. The high-resolution supervised random forest classification from one-meter resolution National Agricultural Imagery Program (NAIP) imagery achieved an overall accuracy of 75.31% (kappa = 0.26). The approach using multi-temporal 30-meter Landsat imagery similarly had an overall accuracy of 79.19% (kappa = .31). We found underprediction error was related to higher forest cover and a lack of visible colour change on the ground in some plots. Where forest cover was low, both models performed better. In areas with <10% forest cover, the high-resolution classification achieved an accuracy of 80.73% (kappa = 0.48), while the Landsat model had an accuracy of 82.55% (kappa = 0.47). Based on the fine-scale predictions, we found that 94% of huckleberry shrubs identified in our study area of Glacier National Park, Montana, USA are over 100 meters from human recreation trails. This information could be combined with productivity and phenology information to estimate the timing and availability of food resources for wildlife and to provide managers with a tool to identify and manage huckleberries. The development of the multi-temporal Landsat models sets the stage for assessment of impacts of disturbance at regional scales on this ecologically, culturally, and economically important shrub species. Our approach to map huckleberries is straightforward, efficient and accessible to wildlife and environmental managers and researchers in diverse fields.

Montana↗