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USGS2018

State of the network: Long-term, high-frequency flow and water quality data in the San Francisco Estuary, California

The USGS California Water Science Center is heavily involved in the measurement of flow and water quality parameters in the San Francisco Estuary, with support from many partner agencies. The California Department of Water Resources (DWR), through the Interagency Ecological Program (IEP) is one of those agencies. This article describes the resulting efforts and methodologies and provides examples of some of the uses of the data sets for science and management interests. The DWR/IEP-funded flow and water quality network provides high resolution data in both space and time, over a large portion of the San Francisco Estuary. This measurement network has evolved over the preceding decades, and proven invaluable for both management and science interests, with particular relevance to water supply and endangered species issues. Presented below are a summary of the measurement network, some of the methods being utilized, and some interesting conditions that became evident during the recent drought that spanned Water Years (WY) 2013-2016, and the wet WY2017 (water year spans Oct 1-Sept 30).

California↗
USGS2001

Simplified conversions between specific conductance and salinity units for use with data from monitoring stations

The U.S. Geological Survey, Bureau of Reclamation, and the California Department of Water Resources maintain a large number of monitoring stations that record specific conductance, often referred to as “electrical conductivity,” in San Francisco Bay Estuary and the Sacramento-San Joaquin Delta. Specific conductance units that have been normalized to a standard temperature are useful in fresh waters, but conversion to salinity units has some considerable advantages in brackish waters of the estuary and Delta. For example, salinity is linearly related to the mixing ratio of freshwater and seawater, which is not the case for specific conductance, even when values are normalized to a standard temperature. The Practical Salinity Scale 1978 is based on specific conductance, temperature, and pressure measurements of seawater and freshwater mixtures (Lewis 1980 and references therein). Equations and data that define the scale make possible conversions between specific conductance and salinity values. This article presents a simplified conversion to salinity units for use with specific conductance data from monitoring stations that have been normalized to a standard temperature of 25 °C and an equation for the reverse calculation. Although these previously undocumented methods have been shared with many IEP agencies over the last two decades, the sources of the equations and data are identified here so that the original literature can be accessed.

Interagency Ecological Program Newsletter↗
USGS1999

A CALFED-supported study of the Delta’s foodweb base

Scientists from six universities and the US Geological Survey (USGS) have begun a new project to characterize the food resource which supports secondary production in different habitats of the Sacramento-San Joaquin Delta. The project is supported by CALFED Category III, USGS, and the IEP; it is designed to answer basic questions about the organic matter which supports biological production at the lowest trophic levels. We know, from the excellent long-term records of IEP agencies, that the abundance of zooplankton (especially native species) has declined dramatically in the past three decades. We do not understand the underlying mechanisms of these declines, but it is likely that they are the result of multiple, interacting stressors. One potential limitation of secondary production could be a sub-optimal food resource, manifested either as low quantity or poor nutritional quality of the available pools of organic matter. Some past studies support this possibility, especially for the case of benthic macroinvertebrates. The project was conceived to do the following: Identify the potential sources of organic matter (for example, phytoplankton, vascular plants, agricultural sources) in different habitats; Determine the relative food quality of each of these different sources for secondary producers, either directly or after microbial processing; and Assess the habitats and environmental conditions that provide the maximum food resources for secondary producers.

Interagency Ecological Program Newsletter↗
USGS2000

Recent research on the hydrodynamics of the Sacramento - San Joaquin River Delta and north San Francisco Bay

This article presents an overview of recent findings from hydrodynamic research on circulation and mixing in the Sacramento-San Joaquin Delta (Delta) (Figure 1) and North San Francisco Bay (North Bay) (Figure 2). For the purposes of this article, North Bay includes San Pablo Bay, Carquinez Strait, and Suisun Bay. The findings presented are those gained from field studies carried out by the U.S. Geological Survey (USGS), as part of the Interagency Ecological Program (IEP), and Stanford University beginning about 1993. The premise behind these studies was that a basic understanding of circulation and mixing patterns in the Bay and Delta is an essential part of understanding how biota and water quality are affected by natural hydrologic variability, water appropriation, and development activities. Data collected for the field studies described in this article have significantly improved our understanding of Bay and Delta hydrodynamics. Measured flows ,in the Delta have provided valuable information on how water moves through the Delta's network of channels and how export pumping affects flows. Studies of the shallows and shallow-channel exchange processes conducted in Honker Bay have shown that the water residence time in Honker Bay is much shorter than previously reported (on the order of hours to several tidal cycles instead ofweeks). Suisun Bay studies have provided data on hydrodynamic transport and accumulation mechanisms that operate primarily in the channels. The Suisun Bay studies have caused us to revise our understanding of residual circulation in the channels of North Bay and of "entrapment" mechanisms in the low salinity zone. Finally, detailed tidal and residual (tidally averaged) time-scale studies of the mechanisms that control gravitational circulation in the estuary show that density-driven transport in the channels is governed by turbulence time-scale (seconds) interactions between the mean flow and stratification. The hydrodynamic research summarized in this article spans a range of estuarine environments (deep water channels to shallow water habitats and brackish water to freshwater) at time scales that range from seconds to years.

California↗