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At least 19 recordsLinked to original sources

Location of the non-tidal current null zone in northern San Francisco Bay

Variations in Sacramento-San Joaquin River discharge into northern San Francisco Bay causes shifts in location of the bottom density current null zone. At a river flow of 2000 m 3 /s this null zone is approximately 20 km from the seaward end of the estuary, whereas at a river flow of 100 m 3 /s it is 80 km from the seaward end; the corresponding distances of salinity penetration are approximately 40 and 90 km from the seaward end. Seaward of the null zone, during low (summer) river discharge conditions, the inward-flowing bottom density current appears typically strong (5–15 cm/s) relative to the outward-flowing river current (river discharge per unit cross-channel area) of <2 cm/s. Landward from this null zone the average river current increases with decreasing cross-channel area. This circulation implies that during the summer water within the null zone has the longest average advective replacement time relative to water seaward or landward of the null zone.

California

Numerical simulation of dissolved silica in the San Fancisco Bay

A two-dimensional (vertical) steady-state numerical model that simulates water circulation and dissolved-silica distributions is applied to northern San Francisco Bay. The model (1) describes the strong influence of river inflow on estuarine circulation and, in turn, on the biologically modulated silica concentration, and (2) shows how rates of silica uptake relate to silica supply and mixing rates in modifying a conservative behavior. Longitudinal silica distributions influenced by biological uptake (assuming both vertically uniform and vertically decreasing uptake situations) show that uptake rates of 1 to 10 μg-at. l −1 day −1 are sufficient to depress silica concentrations at river inflows of 100–400 m 3 s −1 , respectively, and that the higher rates appear ineffective at inflows above 400 m 3 s −1 . The simulations further indicate that higher silica utilization in the null zone is not essential to depress silica concentrations strongly there. Advective water-replacement times at river inflows of 400, 200 and 100 m 3 s −1 are computed to be less than 25, 45 and 75 days, respectively, for a 120-km estuary-river system.

California

Distribution of foraminifera in Chincoteague Bay and the marshes of Assateague Island and the adjacent vicinity, Maryland and Virginia

Scientists from the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center conducted a seasonal collection of estuarine, marsh, and sandy washover surface sediments from Chincoteague Bay, Tom’s Cove, and the surrounding Assateague Island and Delmarva Peninsula in March–April and October 2014, after Hurricane Sandy. Micropaleontology samples were collected as part of a complementary USGS Coastal and Marine Geology Program Sea-level and Storm Impacts on Estuarine Environments and Shorelines project study. For comparison with estuarine and overwash deposited foraminifera, a group of scientists from the USGS Woods Hole Coastal and Marine Science Center in Massachusetts collected samples offshore of Assateague Island on the inner continental shelf during a seafloor mapping study in the summer of 2014 and shipped select samples to the St. Petersburg Coastal and Marine Science Center. The micropaleontological subsamples analyzed for foraminifera at each site can be used to establish a foraminiferal baseline assemblage that takes into consideration the seasonal variability of the various species, regarding density and geographic extent, which are influenced by transient and stable environmental parameters. By understanding what parameters affect the various foraminiferal assemblages, researchers can delineate how alterations in salinity, temperature, or marsh-to-bay interactions, such as marsh erosion, might affect that assemblage.

Maryland, Virginia

A seasonal and spatial comparison of metals, and stable carbon and nitrogen isotopes, in Chincoteague Bay and the marsh deposits of Assateague Island and the adjacent vicinity, Maryland and Virginia

After Hurricane Sandy, scientists from the U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center conducted a seasonal collection of estuarine, marsh, and sandy overwash surface sediments from Chincoteague Bay, Tom’s Cove, and the surrounding Assateague Island and Delmarva Peninsula in March–April and October 2014. Surplus surface sediment was analyzed for metals, percent carbon and nitrogen, δ 13 C, and δ 15 N as part of a complementary U.S. Geological Survey Coastal and Marine Geology Program Sea-level and Storm Impacts on Estuarine Environments and Shorelines project study. The geochemical subsample analyzed for metals and stable isotopes at each site may be used for comparison with past data sets, to create a modern baseline of the natural distribution of the area, to understand seasonal variability as it relates to the health of the local environment, and to assess marsh-to-bay interactions. The use of metals, stable carbon, and stable nitrogen isotopes allows for a more cohesive snapshot of factors influencing the environment and could aid in tracking environmental change. This report serves as an archive for chemical data derived from the surface sediment. Data are available for a seasonal comparison between the March–April 2014 and October 2014 sampling trips. Downloadable data are available as Microsoft Excel spreadsheets. These additional files include formal Federal Geographic Data Committee metadata ( data downloads ).

Maryland, Virginia

Single-beam bathymetry data collected in 2015 from Grand Bay, Alabama-Mississippi

As part of the Sea-level and Storm Impacts on Estuarine Environments and Shorelines (SSIEES) project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted a single-beam bathymetry survey within the estuarine, open-bay, and tidal creek environments of Grand Bay, Alabama-Mississippi, from May to June 2015. The goal of the SSIEES project is to assess the physical controls of sediment and material exchange between wetlands and estuarine environments along the northern Gulf of Mexico, specifically Grand Bay, Alabama-Mississippi; Vermilion Bay, Louisiana; and, along the east coast, within Chincoteague Bay, Virginia-Maryland. The data described in this report provide baseline bathymetric information for future research investigating wetland-marsh evolution, sediment transport, erosion, recent and long-term geomorphic change, and can also support the modeling of changes in response to restoration and storm impacts. The survey area encompasses more than 40 square kilometers of Grand Bay’s waters.

Alabama, Mississippi

User’s guide and metada for the PICES Nonindigenous Species Information System

Introduction Welcome to the PICES Nonindigenous Species Information System, a Microsoft Access database that displays the biogeographic distributions, invasion status, vectors, and key life history attributes of the approximately 740 reported nonindigenous species (NIS) in the estuarine and near-coastal habitats of the North Pacific and Hawaii. This database was developed by the U.S. Environmental Protection Agency and the U.S. Geological Survey under the auspices of Working Group 21 (Invasive Species) of the North Pacific Marine Science Organization (PCIES). The PICES database contains the data used to generate the &ldquo;Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific&rdquo; (Lee and Reusser, 2012; herein referred to as the &ldquo;Atlas&rdquo;). The User&rsquo;s Guide provides instructions on how to use the PICES database as well as metadata for the database and the Atlas. We note that for most users, the Atlas provides a simpler approach to accessing key information on NIS in the PICES countries than the database, though the database does provide additional information on species and sources as well as allowing users to extract information on specific taxa and/or locations (see Section 4). The PICES database also includes species reported from the PICES Rapid Assessment Surveys (RAS). PICES sponsored four rapid assessment surveys with the objective of quickly characterizing the native, non-native, and cryptogenic species present in different locations. Surveys were sponsored in Dalian, China in 2008, Jeju, Korea in 2009, Newport, Oregon, USA in 2010, and Peter the Great Bay, near Vladivostok and Nakhodka, Russia in 2011 ( http://www.pices.int/publications/pices_press/volume19/v19_n1/pp_30-31_Kobe-WS_f.pdf , http://www.pices.int/publications/pices_press/volume20/v20_n1/pp_26-29_RAS-2011.pdf ). The PICES database contains the RAS species that were made available in time for inclusion. Thus, the database does not capture all the species found in these surveys. In addition, much of the information on the RAS species was provided by the experts conducting the survey, and their distributions, environmental requirements, and life history attributes were not evaluated to the same level of detail by the PICES authors as the North Pacific NIS. In lieu of the more extensive review as conduced with the Atlas species, the information on the RAS species needs to be considered preliminary. Additionally, it is important to use the &ldquo;Map All Distributions&rdquo; option (see Section 3.6.6) when mapping their distribution or conducting a query. The general reference for the RAS surveys in the PICES database is &ldquo;PICES Working Group 21, YEAR SURVEY&rdquo;. The overall goal of both the database and Atlas was to simplify and standardize the dissemination of distributional, habitat, and life history characteristics of near-coastal and estuarine nonindigenous species. This database provides a means of querying these data and displaying the information in a consistent format. The specific classes of information the database captures include: Regional and global ranges of native and nonindigenous near-coastal and estuarine species at different hierarchical spatial scales. Habitat and physiological requirements of near-coastal and estuarine species. Life history characteristics of near-coastal and estuarine species. Invasion history and vectors for nonindigenous species. This standardized and synthesized data in the database and the Atlas provide the basic information needed to address a number of managerial and scientific needs. Thus, users will be able to: Create a baseline on the extent of invasion by region in order to assess new invasions. Use existing geographical patterns of invasion to gain some insights into potential new invaders. Use existing geographical patters of invasion to gain some insights into mechanisms affecting relative invasibility of different areas. Use life history attributes and environmental requirements of the reported nonindigenous species to evaluate traits of invaders. Understand the potential spread of invaders based on their habitat and environmental requirements. Understand importance of different vectors of introduction of nonindigenous species by region. The data in the Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific (Lee and Reusser, 2012) are up-to-date as of June 2012. Updates to the PICES database were made in September 2012.

Report

Nekton community response to a large-scale Mississippi River discharge: Examining spatial and temporal response to river management

Freshwater flow is generally held to be one of the most influential factors affecting community structure and production in estuaries. In coastal Louisiana, the Caernarvon Freshwater Diversion (CFD) is managed to control freshwater discharge from the Mississippi River into Breton Sound basin. Operational since 1991, CFD has undergone several changes in management strategy including pulsed spring flooding, which was introduced in 2001. We used a 20-yr time series of fisheries-independent data to investigate how variation in freshwater inflow (i.e., pre- and post-CFD, and pre and post spring pulsing management) influences the downstream nekton community (abundance, diversity, and assemblage). Analyses of long-term data demonstrated that while there were effects from the CFD, they largely involved subtle changes in community structure. Spatially, effects were largely limited to the sites immediately downstream of the diversion and extended only occasionally to more down-estuary sites. Temporally, effects were 1) immediate (detected during spring diversion events) or 2) delayed (detected several months post-diversion). Analysis of river management found that pulsed spring-time inflow resulted in more significant changes in nekton assemblages, likely due to higher discharge rates that 1) increased marsh flooding, thus increasing marsh habitat accessibility for small resident marsh species, and 2) reduced salinity, possibly causing displacement of marine pelagic species down estuary.

Breton Sound

Model sensitivity analysis for coastal morphodynamics: Investigating sediment parameters and bed composition in Delft3D

Numerical simulation of sediment transport and subsequent morphological evolution rely on accurate parameterizations of sediment characteristics. However, these data are often not available or are spatially and/or temporally limited. This study approaches the problem of limited sediment grain-size data with a series of simulations assessing model sensitivity to sediment parameters and initial bed composition configurations in Delft3D, leading to improved modeling practices. A previously validated Delft3D sediment transport and morphology model for Dauphin Island, Alabama, USA, is used as the benchmark case. A method for the generation of representative sediment grain sizes and their spatially varying distributions is presented via end-member analysis of in situ surficial sediment samples. Derived sediment classes and their spatial distributions are applied to two sensitivity case simulations with increasing bed composition complexity. First, multiple sediment classes are applied in a single fully mixed layer, regardless of sediment type. Second, multiple sediment classes are applied in a thin, fully mixed transport layer with underlayers containing only the non-cohesive sediment classes below. Simulations were carried out in a probabilistic, Delft3D MorMerge configuration to capture long-term morphology change for 10 years. We found there is sensitivity to the inclusion of additional sediment classes and sediment distribution made evident in bed level and morphology change. Inclusion of highly mobile fine sediments altered model results in each sensitivity case. The model was also found to be sensitive to initial bed composition in terms of bed level and morphology change, with notable differences between sensitivity cases on decadal timescales, indicating an armoring effect in the second sensitivity case, which used the transport and underlayer bed configuration. The results of this study offer guidance for numerical modelers concerned with sediment behavior in coastal and estuarine environments.

Alabama

The use of conceptual ecological models to identify critical data and uncertainties to support numerical modeling: The northern Gulf of Mexico eastern oyster Crassostrea virginica example

Objective Increasing reliance on numerical simulation models to help inform management and restoration choices benefits from careful consideration of critical early steps in model development. Along the northern coast of the Gulf of Mexico, the eastern oyster Crassostrea virginica fulfills important ecological and economic roles. Using the eastern oyster as an example, we draw on several recent frameworks outlining best practices for model development and application for restoration, conservation, and management. Methods We identify priority model questions, outline a conceptual ecological model (CEM) to guide numerical model development, and use this framework to identify uncertainties and research needs. Result The CEM uses a nested design, identifying explicit vital rates, processes, attributes, and outcomes for the species (oysters), population, and metapopulation (i.e., network of populations) levels in response to drivers of species, population, and metapopulation changes and changing environmental factors. Most management actions related to oyster restoration and harvest affect population attributes directly, but many coastal management actions and changes (i.e., climate change and coastal and water resource engineering) impact environmental factors that alter vital rates and attributes of oysters, populations, and metapopulations. Conclusion Investment in studies targeting individual oyster‐ and population‐level multi‐stressor responses (filtration, respiration, growth, and reproduction) and improving hydrodynamic and environmental models targeting drivers that influence metapopulation vital rates and attributes (i.e., connectivity and substrate persistence) would contribute to reducing uncertainties. Development of numerical models covering the entire oyster life cycle and connectivity of populations using hydrodynamic models of current and predicted conditions to provide key abiotic and biotic factors influencing larval movement, recruitment, and on‐reef oyster vital rates would assist in balancing the goals of conservation, restoration, and fisheries management of this foundational estuarine species.

Marine and Coastal Fisheries: Dynamics, Management

Archive of single-beam bathymetry data collected from select areas in Weeks Bay and Weeks Bayou, southwest Louisiana, January 2013

A team of scientists from the U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center, collected 92 line-kilometers of dual-frequency single-beam bathymetry data in the tidal creeks, bayous, and coastal areas near Weeks Bay, southwest Louisiana. Limited bathymetry data exist for these tidally and meteorologically influenced shallow-water estuarine environments. In order to reduce the present knowledge gap, the objectives of this study were to (1) develop methods for regional inland bathymetry mapping and monitoring, (2) test inland bathymetry mapping system in pilot locations for integrating multiple elevation (aerial and terrestrial lidar) and bathymetry datasets, (3) implement inland bathymetry mapping and monitoring in highly focused sites, and (4) evaluate changes in bathymetry and channel-fill sediment storage using these methods. This report contains single-beam bathymetric data collected between January 14 and 18, 2013. Data were collected from the RV Mako (5-meter vessel) in water depths that ranged from <1 meter to 7.7 meters. Locations of data collection ranged from open-bay systems to narrow inland tidal creeks (U.S. Geological Survey Field Activity Number 13CCT01). This report serves as an archive of processed bathymetry data. Geographic information system data provided in this document include a 10-meter cell-size interpolated gridded bathymetry surface, and trackline maps. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata. Do not use these data for navigational purposes.

Louisiana

Archive of ground penetrating radar data collected during USGS field activity 13BIM01—Dauphin Island, Alabama, April 2013

From April 13 to 20, 2013, scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center (USGS-SPCMSC) conducted geophysical and sediment sampling surveys on Dauphin Island, Alabama, as part of Field Activity 13BIM01 . The objectives of the study were to quantify inorganic and organic accretion rates in back-barrier and mainland marsh and estuarine environments. Various field and laboratory methods were used to achieve these objectives, including subsurface imaging using Ground Penetrating Radar (GPR), sediment sampling, lithologic and microfossil analyses, and geochronology techniques to produce barrier island stratigraphic cross sections to help interpret the recent (last 2000 years) geologic evolution of the island. This data series report is an archive of GPR and associated Global Positioning System (GPS) data collected in April 2013 from Dauphin Island and adjacent barrier-island environments. In addition to GPR data, marsh core and vibracore data were also collected collected but are not reported (or included) in the current report. Data products, including elevation-corrected subsurface profile images of the processed GPR data, unprocessed digital GPR trace data, post-processed GPS data, Geographic Information System (GIS) files and accompanying Federal Geographic Data Committee (FGDC) metadata, can be downloaded from the Data Downloads page.

Alabama

Atlas of nonindigenous marine and estuarine species in the North Pacific

Executive Summary Marine and estuarine nonindigenous species (NIS) are found across the world&rsquo;s oceans, and designing effective management strategies to mitigate this economic, ecological and human health threat requires a basic understanding of the existing invasion patterns at regional to global scales. However, to date, syntheses at ocean basin scales have essentially been nonexistent. To fill the gap for the North Pacific, we synthesized the distributions, invasion history, environmental tolerances, and natural history of the near-coastal nonindigenous species (NIS) reported from the member countries of the North Pacific Marine Science Organization (PICES; United States, Canada, China, Republic of Korea, Japan, and Russia). The hierarchical &ldquo;Marine Ecoregions of the World&rdquo; (MEOW) biogeographic schema was used as the framework for assessing species&rsquo; distributions, with the modification that we added a &ldquo;region&rdquo; level to differentiate eastern and western sides of oceans. The two North Pacific regions are the Northeast Pacific (NEP), which extends from the Gulf of California to the Aleutian Islands, and the Northwest Pacific (NWP), which extends from the East China Sea to the Kamchatka Shelf. To have complete coverage of the United States, we included the MEOW Hawaii Ecoregion as a separate reporting unit. To have complete coverage of Japan and China, we combined five MEOW ecoregions in southern China and Japan into the North Central-Indo Pacific (NCIP) Region. The various types of information were synthesized in a Microsoft Access database, the &ldquo;PICES Nonindigenous Species Information System&rdquo;, which is further described in the &ldquo;User&rsquo;s Guide and Metadata for the PICES Nonindigenous Species Information System&rdquo; (Lee et al., 2012). The PICES database was then used to generate two-page &ldquo;species profiles&rdquo; that map the native and introduced distributions of each species and provide a standardized summary of its invasion history, environmental tolerances, and natural history. These species profiles form the bulk of the &ldquo;Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific&rdquo;. A total of 747 near-coastal nonindigenous species were identified in the PICES countries, with four phyla (Arthropoda, Chordata, Mollusca, and Annelida) constituting more than 70% of these invaders. The NEP and Hawaii have similar numbers of reported nonindigenous species, 368 and 347, respectively. In comparison, the NWP has about 60% of the number of reported NIS, 208. The NCIP contains only 73 NIS, though there is limited information for these ecoregions. When evaluated at an individual MEOW ecoregion scale, the Hawaii Ecoregion was the most invaded with 347 invaders, followed by the Northern California Ecoregion, which includes the San Francisco Estuary, with 287 NIS. The most invaded ecoregion in the NWP was the Central Kuroshio Current Ecoregion, which includes Tokyo Bay, with 87 reported NIS. Eight potential reasons for this geographical discrepancy in the extent of invasion were considered. The two most important appear to be: 1) the milder temperature regimes in the NEP and Hawaii are more conducive for NWP species to invade the NEP and Hawaii than the reverse and 2) there has been a greater search effort for NIS in Hawaii and the NEP at least for certain taxonomic groups. In terms of how the NIS were transported, hull fouling was potentially the most important vector in the NEP, NWP, and Hawaii, with ballast water discharges the second most important in all three regions. Intentional stocking and aquaculture escapees were relatively more important in the NWP than the NEP or Hawaii, reflecting the extensive aquaculture in Asia. Aquaculture associated species (i.e., aquaculture hitchhikers) was relatively important in the NEP, reflecting the historical influx of invaders with the importation of Atlantic and Pacific oysters.

Report

The use of an analog sclerometer to estimate strength of hard substrates supporting coastal communities

In the marine environment, substrate differences such as ‘soft’ and ‘hard’ bottom result in different ecological communities. It is unclear, however, whether strength of hard bottom affects organism presence. To date, a limitation of many studies on organism-substrate interactions is the inability to measure rock strength in situ for marine substrates. Previous efforts involved measurements of rock compressive strength, which relates to the hardness of the interior rock and does not necessarily reflect how organisms interact with the rock surface. Here we present a method for estimating the surface strength, or friability, of marine rocks in the field. We used an analog sclerometer to scratch the surface of marine rocks at predetermined force levels across 38 intertidal sites. Friability ranged over two orders of magnitude (0.13–12.10 MPa) with significant differences among rock types: mudstone (mean = 0.56 MPa) had the lowest resistance, while granitic rocks (mean = 2.14 MPa) had the highest, consistent with theoretical expectations. Friability measurements indicated expected compressive rock strengths across rock types and captured differences within types (i.e., surface weathering). The sclerometer effectively measured surface rock strength on soft rocks, such as mudstone, and hard rocks, like granite. The ability to measure the strength of surfaces represents a new tool for benthic marine research, enabling investigations of substrate-organism interactions in future studies.

Estuarine, Coastal and Shelf Science

Volcanic ash deposition, eelgrass beds, and inshore habitat loss from the 1920s to the 1990s at Chignik, Alaska

We quantified the shallowing of the seafloor in five of six bays examined in the Chignik region of the Alaska Peninsula, confirming National Ocean Service observations that 1990s hydrographic surveys were shallower than previous surveys from the 1920s. Castle Bay, Chignik Lagoon, Hook Bay, Kujulik Bay and Mud Bay lost volume as calculated from Mean Lower Low Water (Chart Datum) to the deepest depths and four of these sites lost volume from Mean High Water to the deepest depths. Calculations relative to each datum were made because tidal datum records exhibited an increase in tidal range in this region from the 1920s to the 1990s. Our analysis showed that Mud Bay is quickly disappearing while Chignik Lagoon is being reduced to narrow channels. Anchorage Bay was the only site that increased in depth over time, perhaps due to erosion. Volcanoes dominate the landscape of the Chignik area. They have blanketed the region in deep ash deposits before the time frame of this study, and some have had smaller ash-producing eruptions during the time frame of this study. Remobilization of land-deposited ash and redeposition in marine areas - in some locations facilitated by extensive eelgrass ( Zostera marina ) beds (covering 54% of Chignik Lagoon and 68% of Mud Bay in 2010) - is the most likely cause of shallowing in the marine environment. Loss of shallow water marine habitat may alter future abundance and distribution of several fish, invertebrate and avian species.

Alaska

Dietary segregation of pelagic and littoral fish assemblages in a highly modified tidal freshwater estuary

Estuarine food webs are highly variable and complex, making identification of their trophic pathways difficult. Energy for the food web of the San Francisco Estuary is thought to be based largely on in situ phytoplankton production, but little attention has been paid to littoral habitats, where other energy sources may be important. We analyzed the stomach contents of over 960 juvenile fishes and the stable carbon and nitrogen isotope ratios of these fishes and their potential food resources in pelagic and littoral habitats from the tidal freshwater area of the estuary. The mixing model IsoSource was used to examine energy sources important to consumers. Our results show evidence of two predominant food web pathways. Pelagic fishes and some littoral fishes showed strong dependence on a zooplankton–phytoplankton trophic pathway. However, the majority of fishes in littoral habitats had diets and carbon isotope ratios consistent with energy arising from submerged aquatic vegetation and epiphytic macroalgae. IsoSource revealed that the overall majority of nutrition of littoral fishes originated from consumption of grazer amphipods. Examining both stable isotopes and stomach contents allowed us to identify a food web with contributions to resident fishes that had been previously underestimated in the estuary. This study provides insight to how estuarine food webs have changed over the last few decades and highlights why the functions of habitats must be understood for effective restoration planning.

Marine and Coastal Fisheries: Dynamics, Management

Coastal groundwater dynamics off Santa Barbara, California: combining geochemical tracers, electromagnetic seepmeters, and electrical resistivity

This paper presents repeat field measurements of 222 Rn and 223,224,226,228 Ra, electromagnetic seepage meter-derived advective fluxes, and multi-electrode, stationary and continuous marine resistivity surveys collected between November 2005 and April 2007 to study coastal groundwater dynamics within a marine beach in Santa Barbara, California. The study provides insight into magnitude and dynamics of submarine groundwater discharge (SGD) and associated nutrient loadings into near-shore coastal waters, where the predominant SGD drivers can be both spatially and temporally separated. Rn-222 and 223,224,226,228 Ra were utilized to quantify the total and saline contribution, respectively, of SGD. The two short-lived 224,223 Ra isotopes provided an estimate of apparent near-shore water mass age, as well as an estimate of the Ra-derived eddy diffusion coefficient, K h ( 224 Ra = 2.86 ± 0.7 m 2 s −1 ; 223 Ra = 1.32 ± 0.5 m 2 s −1 ). Because 222 Rn ( t ½ = 3.8 day) and 224 Ra ( t ½ = 3.66 day) have comparable half-lives and production terms, they were used in concert to examine respective water column removal rates. Electromagnetic seepage meters recorded the physical, bi-directional exchange across the sediment/water interface, which ranged from −6.7 to 14.5 cm day −1 , depending on the sampling period and position relative to the low tide line. Multi-day time-series 222 Rn measurements in the near-shore water column yielded total (saline + fresh) SGD rates that ranged from 3.1 ± 2.6 to 9.2 ± 0.8 cm day −1 , depending on the sampling season. Offshore 226 Ra ( t ½ = 1600 year) and 222 Rn gradients were used with the calculated K h values to determine seabed flux estimates (dpm m −2 day −1 ), which were then converted into SGD rates (7.1 and 7.9 cm day −1 , respectively). Lastly, SGD rates were used to calculate associated nutrient loads for the near-shore coastal waters off Santa Barbara. Depending on both the season and the SGD method utilized, the following SGD-derived nutrient inputs were computed (mol per day per meter of shoreline): NH 4 + = 0.06–0.29 mol day −1 m −1 ; SiO 4 = 0.22–0.29 mol day −1 m −1 ; PO 4 3− = 0.04–0.17 mol day −1 m −1 ; [NO 2 − + NO 3 − ] = 0–0.52 mol day −1 m −1 ; dissolved inorganic nitrogen (DIN) = 0.01–0.17 mol day −1 m −1 , and dissolved organic nitrogen (DON) = 0.08–0.09 mol day −1 m −1 . Compared to the ephemeral nature of fluvial and marine inputs into this region, such SGD-derived loadings can provide a sustained source of select nutrients to the coastal waters off Santa Barbara, California that should be accounted for in mass balance estimates.

California

Disentangling stationary and dynamic estuarine fish habitat to inform conservation: Species-specific responses to physical habitat and water quality in San Francisco Estuary

Estuaries represent critical aquatic habitat that connects surface water distributed between Earth’s landmasses and oceans. They are dynamic transitional ecosystems, which provide important habitat for fishes and other aquatic organisms. Effective conservation of species inhabiting estuaries requires knowledge of the habitat features that drive their abundance and distribution. We sought to elucidate how stationary (i.e., wetlands, shoals, and channels) and dynamic (i.e., salinity, temperature, turbidity, and chlorophyll concentration) habitat features interact to drive distributions of individual fish species. The Pacific coast of the conterminous United States has over 400 estuaries of various types. The largest (historical surface area) is San Francisco Estuary, California. We conducted extensive field observations of fishes in the central San Francisco Estuary among stationary habitat types (i.e., wetland, shoal, and channel) over a 19-month period encompassing substantial variability in dynamic water quality conditions. Most of the species observed, especially native species of special management interest, were associated with tidal wetland habitat. Few species exhibited associations with water quality conditions driven by seasonal (temperature) or a combination of broad- and fine-scale ecosystem processes (salinity and turbidity). Our study provides (1) an empirical demonstration of how researchers can deal with the complex and dynamic expressions of habitat in estuarine systems to address urgent natural resource problems and (2) a clear demonstration of the urgent need for habitat restoration and its likely outcome in systems such as San Francisco Estuary. Restoration of suitable tidal wetland habitat on the West Coast of the United States is likely to be an effective conservation tool to support estuarine fishes given that over 90% of historical tidal wetland habitat in San Francisco Estuary and 85% of vegetated wetland habitat along the Pacific coast of the United States has been lost due to human modification.

California

Spatial and temporal variability of contaminants within estuarine sediments and native Olympia oysters: A contrast between a developed and an undeveloped estuary

Chemical contaminants can be introduced into estuarine and marine ecosystems from a variety of sources including wastewater, agriculture and forestry practices, point and non-point discharges, runoff from industrial, municipal, and urban lands, accidental spills, and atmospheric deposition. The diversity of potential sources contributes to the likelihood of contaminated marine waters and sediments and increases the probability of uptake by marine organisms. Despite widespread recognition of direct and indirect pathways for contaminant deposition and organismal exposure in coastal systems, spatial and temporal variability in contaminant composition, deposition, and uptake patterns are still poorly known. We investigated these patterns for a suite of persistent legacy contaminants including polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) and chemicals of emerging concern including pharmaceuticals within two Oregon coastal estuaries (Coos and Netarts Bays). In the more urbanized Coos Bay, native Olympia oyster ( Ostrea lurida ) tissue had approximately twice the number of PCB congeners at over seven times the total concentration, yet fewer PBDEs at one-tenth the concentration as compared to the more rural Netarts Bay. Different pharmaceutical suites were detected during each sampling season. Variability in contaminant types and concentrations across seasons and between species and media (organisms versus sediment) indicates the limitation of using indicator species and/or sampling annually to determine contaminant loads at a site or for specific species. The results indicate the prevalence of legacy contaminants and CECs in relatively undeveloped coastal environments highlighting the need to improve policy and management actions to reduce contaminant releases into estuarine and marine waters and to deal with legacy compounds that remain long after prohibition of use. Our results point to the need for better understanding of the ecological and human health risks of exposure to the diverse cocktail of pollutants and harmful compounds that will continue to leach from estuarine sediments over time.

Oregon