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At least 19 recordsLinked to original sources
USGS2014

Ground level environmental protein concentrations in various ecuadorian environments: potential uses of aerosolized protein for ecological research

Large quantities of free protein in the environment and other bioaerosols are ubiquitous throughout terrestrial ground level environments and may be integrative indicators of ecosystem status. Samples of ground level bioaerosols were collected from various ecosystems throughout Ecuador, including pristine humid tropical forest (pristine), highly altered secondary humid tropical forest (highly altered), secondary transitional very humid forest (regrowth transitional), and suburban dry montane deforested (suburban deforested). The results explored the sensitivity of localized aerosol protein concentrations to spatial and temporal variations within ecosystems, and their value for assessing environmental change. Ecosystem specific variations in environmental protein concentrations were observed: pristine 0.32 ± 0.09 μg/m3, highly altered 0.07 ± 0.05 μg/m 3 , regrowth transitional 0.17 ± 0.06 μg/m 3 , and suburban deforested 0.09 ± 0.04 μg/m 3 . Additionally, comparisons of intra-environmental differences in seasonal/daily weather (dry season 0.08 ± 0.03 μg/m 3 and wet season 0.10 ± 0.04 μg/m 3 ), environmental fragmentation (buffered 0.19 ± 0.06 μg/m 3 and edge 0.15 ± 0.06 μg/m 3 ), and sampling height (ground level 0.32 ± 0.09 μg/m 3 and 10 m 0.24 ± 0.04 μg/m 3 ) demonstrated the sensitivity of protein concentrations to environmental conditions. Local protein concentrations in altered environments correlated well with satellite-based spectral indices describing vegetation productivity: normalized difference vegetation index (NDVI) (r 2 = 0.801), net primary production (NPP) (r 2 = 0.827), leaf area index (LAI) (r 2 = 0.410). Moreover, protein concentrations distinguished the pristine site, which was not differentiated in spectral indices, potentially due to spectral saturation typical of highly vegetated environments. Bioaerosol concentrations represent an inexpensive method to increase understanding of environmental changes, especially in densely vegetated ecosystems with high canopies or in areas needing high spatial and temporal resolution. Further research to expand understanding of the applicability of bioaerosol concentrations for environmental monitoring is supported by this pilot study.

Ecological Indicators↗
USGS2024

Editorial: From cold seeps to hydrothermal vents: Geology, chemistry, microbiology, and ecology in marine and coastal environments

This Research Topic compiles contemporary studies on cold seeps, hydrothermal vents, mud volcanoes, and related seafloor features that are associated with focused fluid emissions and the transfer of carbon, other chemical species, and sometimes heat from the geosphere to the ocean. Because these features sometimes tap fluids and gas originating kilometers below the seafloor, they provide an important window into deep processes that are otherwise inaccessible to scientists. At the shallow portion of their journey, migrating fluids nearing the seafloor contribute to a range of unique biological, physical, and chemical processes within the sediments themselves and at the sediment-water interface. Seafloor fluid emissions play a critical role in global biogeochemical cycles, ocean chemistry, and possibly even climate change. Seafloor leakage points often emit hydrocarbon gases (especially methane and CO 2 ) and are sometimes the loci for deposition of seafloor minerals that have economic value. A burgeoning area of research focuses on natural products generated at these features, seeking compounds with potential pharmaceutical or other applications. Multidisciplinary studies have become routine for characterization of seafloor fluid emission sites, attesting to the inseparability of geologic, physical, chemical, and biological processes in these settings. It is increasingly common for researchers to combine in a single research cruise: subbottom imaging and seafloor mapping; porewater and water column geochemistry and gas sampling; sediment retrieval for lithologic, biostratigraphic, and solid phase analyses; and studies of benthic and subseafloor communities at the microbial to macrofaunal scales. This multidisciplinary approach has the advantage of ensuring the spatial and temporal coincidence of surveys and samples, an important factor at highly dynamic seafloor fluid emission sites. In addition, researchers often use remotely operated vehicles (ROVs), autonomous underwater vehicles (AUVs), or human-occupied vehicles (HOVs) to record video of the seafloor, compile photomosaics, collect targeted samples, and survey with high-resolution geophysical near-seafloor systems, providing a degree of detail about seafloor fluid emission sites that is unprecedented compared to most areas of the deep ocean. While rarer, long-term cabled observatories or shorter-term deployments of portable observatories are also used at some loci for seafloor fluid flux and are particularly helpful for capturing temporal variations at these dynamic features. Here we summarize the Research Topic’s contribution to multidisciplinary seafloor emission studies in the categories of cold seeps, mud volcanoes, and hydrothermal vents. Figure 1 shows the geographic distribution of the studies in this Research Topic and key features referred to in this Introduction.

Frontiers in Earth Science↗
USGS2014

From hybrid swarms to swarms of hybrids

Science has shown that the introgression or hybridization of modern humans ( Homo sapiens ) with Neanderthals up to 40,000 YBP may have led to the swarm of modern humans on earth. However, there is little doubt that modern trade and transportation in support of the humans has continued to introduce additional species, genotypes, and hybrids to every country on the globe. We assessed the utility of species distributions modeling of genotypes to assess the risk of current and future invaders. We evaluated 93 locations of the genus Tamarix for which genetic data were available. Maxent models of habitat suitability showed that the hybrid, T. ramosissima x T. chinensis , was slightly greater than the parent taxa (AUCs > 0.83). General linear models of Africanized honey bees, a hybrid cross of Tanzanian Apis mellifera scutellata and a variety of European honey bee including A. m. ligustica , showed that the Africanized bees (AUC = 0.81) may be displacing European honey bees (AUC > 0.76) over large areas of the southwestern U.S. More important, Maxent modeling of sub-populations (A1 and A26 mitotypes based on mDNA) could be accurately modeled (AUC > 0.9), and they responded differently to environmental drivers. This suggests that rapid evolutionary change may be underway in the Africanized bees, allowing the bees to spread into new areas and extending their total range. Protecting native species and ecosystems may benefit from risk maps of harmful invasive species, hybrids, and genotypes.

Environment and Ecology Research↗
USGS2018

Geomorphometry in landscape ecology: Issues of scale, physiography, and application

Topographic measures are frequently used in a variety of landscape ecology applications, in their simplest form as elevation, slope, and aspect, but increasingly more complex measures are being employed. We explore terrain metric similarity with changes in scale, both grain and extent, and examine how selecting the best measures is sensitive to changes in application. There are three types of topographic measures: 1) those that relate to orientation for approximating solar input, 2) those that capture variability in terrain configuration, and 3) those that provide metrics about landform features. Many biodiversity hotspots and predators have been found to coincide with areas of complexity, yet most complexity measures cannot differentiate between terrain steepness and uneven and broken terrain. Currently characterizing terrain in landscape-level analyses can be challenging, especially at coarser spatial resolutions but developing methods that improve landscape-level assessments include multivariate approaches and the use of neighborhood statistics. Some measures are sensitive to the spatial grain of calculation, the physiography of the landscape, and the scale of application. We show which measures have the potential to be multi-collinear, and illustrate with a case study how the selection of the best measures can change depending on the question at hand using mountain lion (Puma concolor) occurrence data. The case study showed a combination of infrequently employed metrics, such as view-shed analysis and focal statistics, outperform more commonly employed singular metrics. The use of focal statistics as a measure of topographic complexity shows promise for improving how mountain lions use terrain features.

Environment and Ecology Research↗
USGS2024

Facilitating comparable research in seedling functional ecology

Ecologists have worked to ascribe function to the variation found in plant populations, communities and ecosystems across environments for at least the past century. The vast body of research in functional ecology has drastically improved understanding of how individuals respond to their environment, communities are assembled and ecosystems function. However, with limited exceptions, few studies have quantified differences in plant function during the earliest stages of the plant life cycle, and fewer have tested how this early variability shapes populations, communities and ecosystems. Drawing from the literature and our collective experience, we describe the current state of knowledge in seedling functional ecology and provide examples of how this subdiscipline can enrich our fundamental understanding of plant function across levels of organisation. To inspire progressive work in this area, we also outline key considerations involved in seedling functional research (who, what, when, where and how to measure seedling traits) and identify remaining challenges and gaps in understanding around methodological approaches. Within this conceptual synthesis, we highlight three critical areas in seedling ecology for future research to target. First, given wide variation in the definition of a ‘seedling’, we provide a standard definition based on seed reserve dependence while emphasising the need to measure ontogenetic variation more clearly both within and following the seedling stage. Second, studies demonstrate that seedlings can be studied in multiple media (e.g. soil, agar, filter paper) and conditions (e.g. field, greenhouse, laboratory). We recommend that researchers select methods based on explicit goals, yet follow standard guidelines to reduce methodological noise across studies. Third, research is critically needed to assess the implications of different methodologies on trait measurement and compatibility across studies. By highlighting the importance of seedling functional ecology and suggesting pathways to address key challenges, we aim to inspire future research that generates useful and comparable data on seedling functional ecology. This work is critical to explain variation within and among populations, communities and ecosystems and integrate this most vulnerable stage of plant life into ecological frameworks.

Methods in Ecology & Evolution↗
USGS2014

Considerations in representing human individuals in social ecological models

In this chapter we focus on how to integrate the human individual into social-ecological systems analysis, and how to improve research on individual thought and action regarding the environment by locating it within the broader social-ecological context. We discuss three key questions as considerations for future research: (1) is human thought conceptualized as a dynamic and adaptive process, (2) is the individual placed in a multi-level context (including within-person levels, person-group interactions, and institutional and structural factors), and (3) is human thought seen as mutually constructed with the social and natural environment. Increased emphasis on the individual will be essential if we are to understand agency, innovation, and adaptation in social-ecological systems.

Book chapter↗
USGS2013

Wildlife disease and environmental health in Alaska

Environmental health is defined by connections between the physical environment, ecological health, and human health. Current research within the U.S. Geological Survey (USGS) recognizes the importance of this integrated research philosophy, which includes study of disease and pollutants as they pertain to wildlife and humans. Due to its key geographic location and significant wildlife resources, Alaska is a critical area for future study of environmental health.

Alaska↗
USGS2015

The hydrogeology of urbanization: The lost springs of Washington, D.C., late Tertiary and Quaternary sediments of D.C., and the Baltimore Long Term Ecological Research site (LTER): Chapter

Urbanization is a major process now shaping the environment. This field trip looks at the hydrogeology of the general Washington, D.C., area and focuses on the city's lost springs. Until 150 years ago, springs and shallow dug wells were the main source of drinking water for residents of Washington, D.C. Celebrating the nation's bicentennial, Garnett P. Williams of the U.S. Geological Survey examined changes in water supply and water courses since 1776. He examined old newspaper files to determine the location of the city's springs. This field trip visits sites of some of these springs (few of which are now flowing), discusses the hydrologic impacts of urbanization and the general geological setting, and finishes with the Baltimore Long Term Ecological Research site at Dead Run and its findings. The field trip visits some familiar locations in the Washington, D.C., area, and gives insights into their often hidden hydrologic past and present.

District of Columbia, Maryland↗
USGS2011

Southeast Ecological Science Center: Who we are, what we do

The U.S. Geological Survey (USGS) Southeast Ecological Science Center (SESC) is a research center that studies the biology and ecology of aquatic environments in the United States and around the world. This brochure offers a glimpse of the diverse issues addressed by SESC researchers.

General Information Product↗
USGS2017

The Wetland and Aquatic Research Center strategic science plan

Introduction The U.S. Geological Survey (USGS) Wetland and Aquatic Research Center (WARC) has two primary locations (Gainesville, Florida, and Lafayette, Louisiana) and field stations throughout the southeastern United States and Caribbean. WARC’s roots are in U.S. Fish and Wildlife Service (USFWS) and National Park Service research units that were brought into the USGS as the Biological Research Division in 1996. Founded in 2015, WARC was created from the merger of two long-standing USGS biology science Centers—the Southeast Ecological Science Center and the National Wetlands Research Center—to bring together expertise in biology, ecology, landscape science, geospatial applications, and decision support in order to address issues nationally and internationally. WARC scientists apply their expertise to a variety of wetland and aquatic research and monitoring issues that require coordinated, integrated efforts to better understand natural environments. By increasing basic understanding of the biology of important species and broader ecological and physiological processes, this research provides information to policymakers and aids managers in their stewardship of natural resources and in regulatory functions. This strategic science plan (SSP) was developed to guide WARC research during the next 5–10 years in support of Department of the Interior (DOI) partnering bureaus such as the USFWS, the National Park Service, and the Bureau of Ocean Energy Management, as well as other Federal, State, and local natural resource management agencies. The SSP demonstrates the alignment of the WARC goals with the USGS mission areas, associated programs, and other DOI initiatives. The SSP is necessary for workforce planning and, as such, will be used as a guide for future needs for personnel. The SSP also will be instrumental in developing internal funding priorities and in promoting WARC’s capabilities to both external cooperators and other groups within the USGS.

Open-File Report↗
USGS1995

USGS global change research

The Earth's global environment--its interrelated climate, land, oceans, fresh water, atmospheric and ecological systems-has changed continually throughout Earth history. Human activities are having ever-increasing effects on these systems. Sustaining our environment as population and demands for resources increase requires a sound understanding of the causes and cycles of natural change and the effects of human activities on the Earth's environmental systems. The U.S. Global Change Research Program was authorized by Congress in 1989 to provide the scientific understanding necessary to develop national and international policies concerning global environmental issues, particularly global climate change. The program addresses questions such as: what factors determine global climate; have humans already begun to change the global climate; will the climate of the future be very different; what will be the effects of climate change; and how much confidence do we have in our predictions? Through understanding, we can improve our capability to predict change, reduce the adverse effects of human activities, and plan strategies for adapting to natural and human-induced environmental change.

Fact Sheet↗
USGS2017

Deepwater Program: Lophelia II, continuing ecological research on deep-sea corals and deep-reef habitats in the Gulf of Mexico

The deep sea is a rich environment composed of diverse habitat types. While deep-sea coral habitats have been discovered within each ocean basin, knowledge about the ecology of these habitats and associated inhabitants continues to grow. This report presents information and results from the Lophelia II project that examined deep-sea coral habitats in the Gulf of Mexico. The Lophelia II project focused on Lophelia pertusa habitats along the continental slope, at depths ranging from 300 to 1,000 meters. The chapters are authored by several scientists from the U.S. Geological Survey, National Oceanic and Atmospheric Administration, University of North Carolina Wilmington, and Florida State University who examined the community ecology (from microbes to fishes), deep-sea coral age, growth, and reproduction, and population connectivity of deep-sea corals and inhabitants. Data from these studies are presented in the chapters and appendixes of the report as well as in journal publications. This study was conducted by the Ecosystems Mission Area of the U.S. Geological Survey to meet information needs identified by the Bureau of Ocean Energy Management.

Gulf of Mexico↗
USGS2012

Limnology of the Green Lakes Valley: Phytoplankton ecology and dissolved organic matter biogeochemistry at a long-term ecological research site

Background : Surface waters are the lowest points in the landscape, and therefore serve as excellent integrators and indicators of changes taking place in the surrounding terrestrial and atmospheric environment. Aims : Here we synthesise the findings of limnological studies conducted during the past 15 years in streams and lakes in the Green Lakes Valley, which is part of the Niwot Ridge Long-term Ecological Research (LTER) Site. Methods : The importance of these studies is discussed in the context of aquatic ecosystems as indicators, integrators, and regulators of environmental change. Specifically, investigations into climatic, hydrologic, and nutrient controls on present-day phytoplankton, and historical diatom, community composition in the alpine lake, Green Lake 4, are reviewed. In addition, studies of spatial and temporal patterns in dissolved organic matter (DOM) biogeochemistry and reactive transport modelling that have taken place in the Green Lakes Valley are highlighted. Results and conclusions : The findings of these studies identify specific shifts in algal community composition and DOM biogeochemistry that are indicative of changing environmental conditions and provide a framework for detecting future environmental change in the Green Lakes Valley and in other alpine watersheds. Moreover, the studies summarised here demonstrate the importance of long-term monitoring programmes such as the LTER programme.

Colorado↗
USGS2020

Unfamiliar territory: Emerging themes for ecological drought research and management

Novel forms of drought are emerging globally, due to climate change, shifting teleconnection patterns, expanding human water use, and a history of human influence on the environment that increases the probability of transformational ecological impacts. These costly ecological impacts cascade to human communities, and understanding this changing drought landscape is one of today’s grand challenges. By using a modified horizon-scanning approach that integrated scientists, managers, and decision-makers, we identified the emerging issues in ecological drought that represent key challenges to timely and effective responses. Here we review the themes that most urgently need attention, including novel drought conditions, the potential for transformational drought impacts, and the need for anticipatory drought management. This horizon scan and review provides a roadmap to facilitate the research and management innovations that will support forward-looking, co-developed approaches to reduce the risk of drought to our socio-ecological systems during the 21 st century.

One Earth↗
USGS2022

Field testing a high-frequency acoustic attenuation system for measuring fine suspended sediments and algal movements

Acoustic measurements of suspended sediment have the potential to allow remote, autonomous monitoring of sediment movements at much higher temporal resolution than traditional manual sampling methods. Although suspended sands present a challenging measurement problem due to their logarithmic distribution with depth, fine clay sediments are distributed evenly throughout a stream cross section, making them amenable to point measurements. In order to improve measurement capabilities for fine sediments in stream channels, The National Center for Physical Acoustics at The University of Mississippi has developed a remote, autonomous acoustic system to monitor fine sediments transported in streams. The system was tested on the Middle Rio Grande near San Acacia, New Mexico, and in Goodwin Creek in Panola County, Mississippi. The acoustic instruments were compared to sediment concentrations from physical samples in both deployments. Diurnal patterns were found in the acoustic signals from the Middle Rio Grande, and a follow up experiment at The University of Mississippi Biological Field Station was used to investigate the potential effects of algal biomass on acoustic attenuation measurements. The results showed diurnal patterns in attenuation were associated with patterns in light, temperature, and dissolved oxygen. These results combined with information from the literature indicate diel movement of algal colonies in the water column of some water bodies may interfere with high-frequency acoustic measurements in natural environments and that acoustic methods have the potential to allow ecological researchers to evaluate mass algal movements in the field. Results from Goodwin Creek demonstrate that the acoustic system is able to provide measurements of sediment concentration with high temporal resolution that track well with expected sediment transport patterns in response to discharge hydrographs.

Applied Acoustics↗
USGS2021

Can identifying discrete behavioral groups with individual-based acoustic telemetry advance the understanding of fish distribution patterns?

Identifying patterns of organismal distribution can provide valuable insights for basic and applied marine and coastal ecology because understanding where animals are located is foundational to both research and science-based conservation. Understanding variation in distributional patterns can lead to a better assessment of ecological drivers and an improved ability to predict consequences of natural and altered relationships. Here, our purpose is to explore if quantifying coexisting groups of individual fish predators advances our understanding of field distribution patterns. Toward this end, we quantified locations of 59 acoustically tagged striped bass ( Morone saxatilis) within a 26-stationary unit telemetry receiver array in Plum Island Estuary (PIE), MA, United States. We then used cluster analyses on spatial and temporal-spatial metrics from this dataset to (1) assess if distinct groups of individuals coexisted, (2) quantify group characteristics, and (3) test associations between groups and distribution (e.g., physical site type and region). Based on multiple lines of evidence, we identified four groups of striped bass with different space use patterns that persisted across seasons (summer and fall). Similar-sized striped bass clustered at spatial and temporal scales at which individuals within distinct groups could, and did, physically overlap. In addition, distributional groups were linked to components of physical site type and region suggesting that discrete groups of individuals can interact differently with the environment within the same ecological system. The identification of these distinct groups of individuals creates a baseline from which to explore further ecological implications of grouping behavior for research and conservation in geographically large, temporally dynamic, and spatially heterogeneous marine and coastal environments.

Massachusetts↗
USGS1998

Recreation ecology research findings: Implications for wilderness and park managers

Recreationists unintentionally trample vegetation, erode soil, and disturb wildlife. Such human-related impacts present a dilemma for managers charged with the dual objectives of providing recreational opportunities and preserving natural environments. This paper presents some of the principal findings and management implications from research on visitor impacts to protected areas, termed recreation ecology research. This field of study seeks to identify the type and extent of resource impacts and to evaluate relationships between use-related, environmental, and managerial factors. The capabilities and managerial utility of recreation impact monitoring are also described.

Book chapter↗
USGS2001

Lessons learned from long-term ecosystem research and monitoring in alpine and subalpine basins of the Colorado Rocky Mountains, USA

Long-term ecosystem research and monitoring was begun in the Loch Vale watershed of Rocky Mountain National Park in 1983, after extensive survey work to identify the best location. Then, as now, our scientific objectives were to understand natural biogeochemical cycles and variability, so that we could differentiate ecosystem changes from human-caused disturbances, such as atmospheric deposition of pollutants and climate change. We have learned many lessons, often through our mistakes, that are worth passing on. Clear scientific objectives, even for long-term monitoring, are essential. Standardized methods, including rigorous quality assurance procedures should be adhered to from the beginning of the program. All data, even those collected routinely for background records, should be scrutinized and summarized at least once a year. Freely share basic information such as weather, hydrologic, chemical, and descriptive records with other researchers who can build upon your efforts. Use many tools when asking complex ecological questions, in order to minimize bias toward specific results. Publish frequently; long-term studies do not imply there are no interim conclusions or interesting findings. Interpret findings frequently to policy makers and citizens; increased understanding of the environment and human-caused changes may improve natural resource management, and build support for ecological research. And finally, be persistent. Long-term ecological research can be frustrating and difficult to maintain, yet is often the best way to observe and understand ecological change on a meaningful time scale.

Colorado↗