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Distributed geospatial model sharing based on open interoperability standards

Numerous geospatial computational models have been developed based on sound principles and published in journals or presented in conferences. However modelers have made few advances in the development of computable modules that facilitate sharing during model development or utilization. Constraints hampering development of model sharing technology includes limitations on computing, storage, and connectivity; traditional stand-alone and closed network systems cannot fully support sharing and integrating geospatial models. To address this need, we have identified methods for sharing geospatial computational models using Service Oriented Architecture (SOA) techniques and open geospatial standards. The service-oriented model sharing service is accessible using any tools or systems compliant with open geospatial standards, making it possible to utilize vast scientific resources available from around the world to solve highly sophisticated application problems. The methods also allow model services to be empowered by diverse computational devices and technologies, such as portable devices and GRID computing infrastructures. Based on the generic and abstract operations and data structures required for Web Processing Service (WPS) standards, we developed an interactive interface for model sharing to help reduce interoperability problems for model use. Geospatial computational models are shared on model services, where the computational processes provided by models can be accessed through tools and systems compliant with WPS. We developed a platform to help modelers publish individual models in a simplified and efficient way. Finally, we illustrate our technique using wetland hydrological models we developed for the prairie pothole region of North America.

Journal of Remote Sensing↗

Carbon, sulfur, and mercury - A biogeochemical axis of evil

I welcome this opportunity to come and preach the gospel according to Aiken, which is that to really understand ecosystems we need to pay much more attention to reactions involving natural organic matter. It's taken me many years to convince my colleagues of the important role of dissolved organic matter (DOM) in the methylation of mercury. Methylmercury is a nasty player - it's a very efficient bioaccumulator that rockets up through the food chain, so even the very low concentrations (nanograms per liter) found in many ecosystems are significant. In most aquatic environments mercury is atmospherically deposited. Here in the Delta, we also have mercury from naturally occurring deposits, as well as from historic mercury and gold mining, coming in from the upstream watershed. Methylmercury is produced at the sediment-water interface by sulfate-reducing bacteria.

Conference Paper↗

Mobility of radioisotopes in marine surface sediments

Transport of a radioisotope in a sediment-water system can be retarded by sorption of the isotope to solid; which is controlled by the affinity of the radioisotope for the sediment particles. In order to study trace metal and ra- dionuclide mobility on the sea floor, the following measurements were carried out: (1)effective diffusion rates in sediments in the laboratory and on the sea floor, (2) laboratory distribution ratio (K d ) values, which measure the affinity of an element for the solid phase, and (3) field Kd values. Effective dffusion rates and Kd values for the radioisotopes 134 C s 125 Sb, 203 Hg, 133 Ba, 7 Be, 65 Z, 54 M, 60 Co, 59 Fe, and 113 Sn were measured for si= marine sediments: carbonate ooze, siliceous clay, red clay, metalliferous sediment, hemipelagic sediment, and terrigenous clay. The terrigenous clays analyzed are similar in composition and texture to sediments from sites of present and potential radioactive waste contamination in the arctic. Based on the effective diffusion coefficients (D s) determined in the laboratory, the isotope mobility fell into five groups. Diffusive transport rates fall into similar mobility groups for all sediment types tested both in the laboratory and on the sea floor. Interaction of the radionuclide with solids was the primary mechanism for reducing its mobility in the sediment-water system. As it is difficult to measure in situ diffusion rates directly, this suggests that K d values based on measured sediment properties can be used to help determine in situ diffusion rates for radioactive waste near the sediment-water interface for other locations, such as the Arctic. The relative contributions of diffusion, bioturbation, irrigation, and sediment transport to radionuclide transport can then be assessed and used to predict the interactions and fate of the radioactive waste in the sedimentary environment.

Book chapter↗

Primary food resources in the Sacramento-San Joaquin Delta

The Sacramento-San Joaquin River Delta, a complex mosaic of tidal freshwater habitats, is now a focus of ecosystem rehabilitation because of changes in critical functions associated with its geographic location at the landestuary interface. One of these functions is the production, transport, and transformation of organic matter that constitutes the “primary food supply,” that is, the food supply to the base of the food web. Interest in the primary food supply is motivated by evidence for sub-optimal food quantity or quality at trophic levels that support fish recruitment, including primary consumers such as clams, mysids, cladocerans, rotifers, and native copepods. We used the historical data set to examine the magnitudes of the most important organic matter sources for the Delta, the factors underlying their interannual and longer-term variability, and the implications of ecosystem rehabilitation actions for these sources. Here, we present a summary of the first phase of the analysis, including the quantitative importance of different organic matter sources and some of the hydrological controls on their year-to-year variability. The full report of this first phaseincluding data sources, the methods of calculation, and references, is in press elsewhere (Jassby and Cloern forthcoming). The historical data analysis is part of a larger project in which measurements of stable isotopes and biogeochemical markers, and experiments on organic matter biodegradation and zooplankton growth rates, are being used collectively to define the primary food resources and their quality.

California↗

Groundwater modeling

The state of the science and practice in groundwater modeling brings to mind highly sophisticated computer models that are running in parallel on many multi-processor machines. These models are expected to incorporate many different processes of both saturated and unsaturated groundwater flow and transport and possibly the media to which it connects, like surface waters and the atmosphere. We are increasingly aware we cannot study groundwater flow in isolation if we are to make useful predictions of, for instance, the impacts of climate change on the groundwater regime. We have come a long way. Today we are no longer limited to equations for flow toward a well, perhaps near an infinitely long straight canal (method of images), to sandbox models in the laboratory, or to simple steady state models of flow in a single aquifer. We now have computer models that solve groundwater flow and transport in multi-aquifer settings under transient conditions and with a user-friendly graphical user interface that allows widespread use. Additionally, multi-media models are now leaving the research environment and becoming available to mainstream consultants. So in that sense the science of groundwater modeling has matured. The practice of groundwater modeling, however, has also matured. We have come to realize that model output, being a necessary simplification of an unknowably complex natural world, has inherent limitations. That is, a model of reality is not reality itself. There is uncertainty associated with all facets of our model—parameterization, aquifer geometry and discretization, boundary conditions, and future hydrologic drivers such as future pumping regimes and climates. Today a model is now more appropriately seen as a tool that provides a quantitative framework to make supportable forecasts rather than an oracle that gives us all the answers. In this chapter we set out to briefly review the state of the science and practice in modeling. In doing so, we augment existing assessments from the journal Groundwater (e.g., Hunt and Zheng 2012; Langevin and Panday 2012; Molz 2017a,b; White 2017), specifically in terms of modeling approach. An effective modeling approach is critical. If a modeler does not decompose the societal problem correctly, the model will not be fit-for-purpose, no matter how sophisticated the code’s capabilities. Moreover, capabilities of codes will be ever improving; good modeling practices have a timelessness that is more robust. How best to decompose the problem and provide models that are accepted? We lay out here some approaches for today’s applied groundwater modeling. Specifically, we suggest: (1) a step-wise modeling process; (2) including a two-dimensional areal model within this process; (3) keeping abreast of industry standards; and (4) ways to increase acceptance of the models we produce.

Book chapter↗

Living with wildfire in Archeluta County, Colorado: 2015 data report

Residents in the wildland-urban interface (WUI) can play an important role in reducing wildfire’s negative effects by performing wildfire risk mitigation on their property. This report offers insight into the wildfire risk mitigation activities and related considerations, such as attitudes, experiences, and concern about wildfire, for people with homes in the Pagosa Fire Protection District of Archuleta County, Colorado. Data come from a social survey and parcel-level rapid wildfire risk assessments administered by FireWise of Southwest Colorado. Results are presented both in graphical form and as detailed summary statistics (in appendices). As we recognize that results from similar surveys and assessments in other communities may differ, these linked datasets contribute to a broader effort to understand decisions about wildfire risk mitigation on private property. Results can facilitate long-term monitoring, management, and educational practices concerning the mitigation of wildfire risk in WUI communities.

Colorado↗

Living with wildfire in La Plata County, Colorado: 2015 data report

Residents in the wildland-urban interface (WUI) can play an important role in reducing wildfire’s negative effects by performing wildfire risk mitigation on their property. This report offers insight into the wildfire risk mitigation activities and related considerations, such as attitudes, experiences, and concern about wildfire, for people with homes in select communities in La Plata County, Colorado. Data come from a social survey and parcel-level rapid wildfire risk assessments administered by FireWise of Southwest Colorado. Results are presented both in graphical form and as detailed summary statistics (in appendices). As we recognize that results from similar surveys and assessments in other communities might differ, these linked datasets contribute to a broader effort to understand decisions about wildfire risk mitigation on private property. Results can facilitate long-term monitoring, management, and educational practices concerning the mitigation of wildfire risk in WUI communities.

Colorado↗

Living with wildfire in Montezuma County, Colorado: 2015 data report

Residents in the wildland-urban interface (WUI) can play an important role in reducing wildfire’s negative effects by performing wildfire risk mitigation on their property. This report offers insight into the wildfire risk mitigation activities and related considerations, such as attitudes, experiences, and concern about wildfire, for people with homes in select communities in Montezuma County, Colorado. Data come from a social survey and parcel-level rapid wildfire risk assessments administered by FireWise of Southwest Colorado. Results are presented both in graphical form and as detailed summary statistics (in appendices). As we recognize that results from similar surveys and assessments in other communities may differ, these linked datasets contribute to a broader effort to understand decisions about wildfire risk mitigation on private property. Results can facilitate long-term monitoring, management, and educational practices concerning the mitigation of wildfire risk in WUI communities.

Colorado↗

Hydrothermal vent fluids, siliceous hydrothermal deposits, and hydrothermally altered sediments in Yellowstone Lake

Stable isotopic (dD and d18O) data indicate about 13% total evaporative concentration has occurred in Yellowstone Lake, yet lake waters are enriched in dissolved As, B, Cl, Cs, Ge, Li, Mo, Sb, and W by at least an order-of-magnitude relative to the flow-weighted composition of inflowing streams. We conclude that lake water is a mixture of inflowing surface water and hydrothermal source fluid that is strongly enriched in Cl and other elements. We estimate that ~10% of the total hydrothermal flux in Yellowstone National Park (YNP) occurs in Yellowstone Lake. Geochemical and mineralogical studies of hydrothermal deposits and hydrothermally altered lake sediments (vent muds) from the active or recently active vent sites on the floor of Yellowstone Lake indicate that their formation is due to hydrothermal fluid quenching during flow through shallow conduits, or to mixing upon egress into cold bottom waters. Siliceous precipitates form conduits within the uppermost sediments, tabular deposits along sedimentary layers, and spires up to 8 m tall. These deposits are enriched in As, Cs, Hg, Mo, Sb, Tl and W. Spires, vent deposits, and conduits contain filamentous microstructures that probably represent silicified bacteria. Partly recrystallized and silicified diatoms are abundant in deposits below the sediment-water interface. Vent muds and some outer conduit walls show pervasive leaching of silica, which explains the occurrence of most sublacustrine vents in craters. Systematics of dD and Cl variations, as well as silica and cation geothermometry for hydrothermal fluids, suggest that ascending fluids boil due to depressurization to a temperature of ~220°C and then mix with pore waters prior to venting on the lake bottom. Depositional temperatures for sublacustrine silica deposits, calculated using oxygen isotope fractionation, range from 78°C to 164°C. The amorphous silica-saturated vent fluids precipitate silica to form spires or conduits largely by conductive cooling. Bacterial accumulations may have inhibited the mixing of vent fluids and bottom waters, and provided a site for silica deposition.

Wyoming↗

Regional protocol framework for the inventory and monitoring of breeding Atlantic Coast Piping Plovers

This regional protocol provides a framework for quantifying the number of breeding pairs and productivity of Atlantic Coast piping plover (Charadrius melodus) populations during the breeding season. A primary purpose of this protocol is to standardize piping plover monitoring during the breeding season. The survey techniques described herein involve repeated visual counts of adults, nests, eggs, and chicks within a defined survey site (i.e., beach) as well as visual identification of potential threats to survival and productivity. Resulting data can be compiled and analyzed across multiple geographic units (i.e., sites, states, and recovery units) to assess progress toward recovery goals, inform local management decisions, assess management effectiveness, and improve monitoring efforts. This protocol framework was developed as part of the United States Fish and Wildlife Service (USFWS) National Wildlife Refuge System (NWRS) Inventory and Monitoring (I&M) Initiative in coordination with Ecological Services (ES) and state coordinators within the Southeast and Northeast Regions (4 and 5, respectively). Although this protocol framework is to be used primarily by NWRS to inform recovery goals, assist with local management decision-making, and meet State reporting requirements, the approach strives to assist monitoring efforts of nonNWRS partners, such as other federal agencies (e.g. National Park Service), State wildlife agencies, non-governmental organizations, and private landowners. This protocol framework and associated data management system (PIPLweb) aims to interface with existing data management and analysis tools (i.e., PIPLODES, NestStory, and PiperEx) to ensure that data collection is efficient and comparable across scales, and supports management decisions across partners. The content and structure of the protocol framework follows standards set forth in the USFWS’s How to Develop Survey Protocols: A Handbook (Version 1.0; 2013). The eight elements addressed include: introduction, sampling design, field methods, data management and analysis, reporting, personnel requirements and training, operational requirements, and references. A series of standard operating procedures (SOPs) provides greater detail on recommended methods and technical aspects of this protocol. Data entry, archival, and multi-scale analysis are handled through a secure web application (Plover Inventory and Productivity Library; PIPLweb) developed by the United States Geological Survey (USGS). When management activities and survey objectives are similar across management units, partners (Refuges, other federal agencies, State, NGOs, private) are encouraged to use this protocol framework to develop stepped-down site-specific survey protocols that include guidance for conducting on-the-ground monitoring and management plans.

Regional Protocol Framework↗

The ‘Ike Wai Hawai‘i groundwater recharge tool

This paper discusses the design and implementation of the ‘Ike Wai Hawai‘i Groundwater Recharge Tool, an application for providing data and analyses of the impacts of land-cover and climate modifications on groundwater-recharge rates for the island of O‘ahu. This application uses simulation data based on a set of 29 land-cover types and two rainfall scenarios to provide users with real-time recharge calculations for interactively defined land-cover modifications. Two visualizations, representing the land cover for the island and the resultant groundwater-recharge rates, and a set of metrics indicating the changes to groundwater recharge for relevant areas of the map are provided to present a set of easily interpreted outcomes based on the user-defined simulations. Tools are provided to give users varying degrees of control over the granularity of data input and output, allowing for the quick production of a roughly defined simulation, or more precise land-cover models that can be exported for further analysis. Heuristics are used to provide a responsive user interface and performant integration with the database containing the full set of simulation data. This tool is designed to provide user-friendly access to the information on the impacts of land-cover and climate changes on groundwater recharge rates needed to make data-driven decisions.

Hawaii↗

Continuous-resistivity profiling for coastal ground-water investigations: Three case studies

Continuous-resistivity profiling (CRP) was used at three sites to investigate submarine groundwater discharge (SGD) and to delineate the subsurface saltwater/freshwater interface. At the first site, in Georgetown, South Carolina, CRP was used to locate possible areas of SGD in the Winyah Bay estuary. The data show evidence of SGD in the Pee Dee River, feeding into Winyah Bay, at approximately the location of the forest/marsh boundary. In Waquoit Bay, Massachusetts, CRP was used to further map the extent of SGD already measured by sea floor seepage meters and to delineate the subsurface saltwater/freshwater boundary. The data show evidence for a focused groundwater plume beneath the bay that may extend 350 meters (m) out from the shore. Finally, CRP was used in Orleans, Massachusetts, to verify a groundwater model prediction of freshwater-saturated sediments underlying an area of Cape Cod Bay, just west of Rock Harbor. The data support the prediction of freshwater-saturated sediments beneath the bay. Results from all three sites show the value of CRP in coastal groundwater investigations.

Massachusetts, South Carolina↗

An ecological and conservation perspective

Natural ecosystems are facing unprecedented threats which directly threaten human well-being through decreases in critical ecosystem services (IPBES 2019). The top five drivers causing the largest global impacts to biodiversity and ecosystem services include: 1) changes in land and sea use; 2) direct exploitation of organisms; 3) climate change; 4) pollution, and 5) invasive alien species (IPBES 2019). Although One Health acknowledges the link between the health of humans, animals, and the environment, One Health discussions have historically focused on the prevention and control of infectious disease at the human-animal interface rather than these large-scale drivers of health. While One Health has succeeded in bringing awareness to the need for proactive disease control measures such as strengthened biosecurity and vaccine development (e.g., Machalaba et al., 2018; Middleton et al., 2014), disease is only one component of health. In this chapter, we explore the potential for One Health to shift its focus from disease prevention to health promotion to more fully integrate solutions that protect the health of humans, animals, and the ecosystems on which we all depend for our economies, livelihoods, food security, and health. This shift will facilitate a more seamless inclusion of ecological health and environmental conservation in the One Health paradigm and can serve as the basis for a comprehensive approach to complex problems at the root of global health. We also suggest a framework for creating and applying health metrics for wildlife and ecological systems that will be essential for measuring the success of actions aimed at maintaining or shifting systems to desired states.

Book chapter↗

Living with wildfire in Ashland, Oregon: 2020 data report

Wildfire affects many types of communities. Improved understandings of urban conflagrations are leading some fire-prone communities, such as Ashland, Oregon, to expand their attention from focusing solely on the intermix fringe to managing wildfire threats across more urbanized wildland urban interface (WUI) communities. The core intent of this project was to build a partnership between the Wildfire Research (WiRē) Team and Ashland Fire and Rescue (AFR) by leveraging existing wildfire risk data collected in March 2018 and pairing it with newly collected social data to better understand Ashland, Oregon residents’ knowledge, experiences, and perceptions about wildfire risk. This greater understanding will help AFR focus its programs and outreach and ultimately promote increased mitigation and reduced wildfire risk in Ashland.

Oregon↗

Putting people first: Using social science to reduce risk

Wildland-urban interface residents, who occupy the areas where wildlands meet and mix with human development, are both contributors to and recipients of the disastrous effects of wildland fires. They contribute through fire starts, flammable homes, unmitigated properties, opposition to mitigation on nearby public lands, and land use planning efforts. We argue that successful, sustainable wildland fire solutions are only possible if the WUI residents are engaged. In this article, we describe an evidence-based quantitative social science model to illustrate how to put people at the center of wildland fire solutions. Our hope is to spur greater use of social science in evidence-based wildland fire programs.

Wildfire Magazine↗

Genetics as a tool for conservation and management of West Indian manatee populations in Brazil

A study conducted by the National Center for Research and Conservation of Aquatic Mammals (CMA), United States Geological Survey Wetland and Aquatic Research Center, and partner researchers found that the marine Antillean manatee ( Trichechus manatus manatus ) has low genetic diversity in regions where there are territorial interfaces with the Amazonian manatee ( Trichechus inunguis ). The study was published as an article in the journal, Frontiers in Marine Science.

Sirenews↗

Red-footed Falcon Falco vespertinus

Red-footed falcons (Falco vespertinus) are a small, long-distance and obligate migrant falcon that breeds at the forest-steppe interface in Eurasia and winters in Southern Africa. Research carried out with geolocators and satellite transmitters show that during the southbound migration Central Asian birds migrate through the Caucasus and the Middle East, while those from Eastern Europe cross the Eastern Mediterranean. Once in Africa, they cross the Sahara, the Sahel, where they perform short stopovers, and the Congo rainforest or the Rift valley, heading towards the wintering grounds. Northbound migration involves stopovers in West Africa and long crossings over the Mediterranean Sea. Both visual observations and tracking studies show that at least some populations of the species perform a clockwise loop migration that involves extensive longitudinal movements and. for some sub-populations, crossing the Central Mediterranean only during spring. Pre-breeding migration has a longer duration than post-breeding migration, probably because stopovers are longer and wind assistance lower. Red-footed falcons also face substantial anthropogenic threats along migration, particularly the risk of shooting at migratory bottlenecks.

Book chapter↗

Eastern Imperial Eagle Aquila heliaca

Eastern imperial eagles are a short-, medium-distance, partially-migratory, or even non-migratory, raptor that breeds at the forest-steppe interface in Eurasia and winters in Northern Africa, the Middle East or South Asia. Migratory strategies of imperial eagles are diverse. Eagles breeding in Central and Southeast Europe and south of the Black Sea usually are year-round residents or partial- or short- distance migrants that winter in the Balkan Peninsula, Northern Africa, or western parts of the Middle East. Eagles that summer to the east of the Black Sea are usually medium-distance migrants that winter in the Middle East or south Asia. Migration tends to follow topographic features, avoids water-crossings and, especially for young birds, may be intermittent and indirect. Populations of imperial eagles are small, in decline in some parts of the distribution, and the species faces a large number of threats including electrocution, persecution, and capture for sale in markets.

Book chapter↗