SEARCH · Geology Reports

Results for “Cells”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,747 records · Page 97Linked to original sources

USGS1998

Limitations to mapping habitat use areas in changing landscapes using the Mahalanobis distance statistic

We tested the potential of a GIS mapping technique, using a resource selection model developed for black-tailed jackrabbits (Lepus californicus) and based on the Mahalanobis distance statistic, to track changes in shrubsteppe habitats in southwestern Idaho. If successful, the technique could be used to predict animal use areas, or those undergoing change, in different regions from the same selection function and variables without additional sampling. We determined the multivariate mean vector of 7 GIS variables that described habitats used by jackrabbits. We then ranked the similarity of all cells in the GIS coverage from their Mahalanobis distance to the mean habitat vector. The resulting map accurately depicted areas where we sighted jackrabbits on verification surveys. We then simulated an increase in shrublands (which are important habitats). Contrary to expectation, the new configurations were classified as lower similarity relative to the original mean habitat vector. Because the selection function is based on a unimodal mean, any deviation, even if biologically positive, creates larger Malanobis distances and lower similarity values. We recommend the Mahalanobis distance technique for mapping animal use areas when animals are distributed optimally, the landscape is well-sampled to determine the mean habitat vector, and distributions of the habitat variables does not change.

Journal of Agricultural, Biological, and Environme↗

USGS1996

Incorporation of bacterial extracellular polysaccharide by black fly larvae (Simuliidae)

Black fly larvae (Simulium) assimilated, with high efficiency (80-90%), bacterial extracellular polysaccharide (EPS) extracted from laboratory cultures of a pseudomonad isolated from the Ogeechee River. Incorporation was traced using 13C-labelled EPS offered to larvae as a coating on a mixture of 1-μm latex beads and kaolin particles. These EPS-coated particles were used to simulate natural particles, both living and dead. Solubility, protein, and nitrogen content of the EPS suggested it was a slime rather than a capsular polysaccharide. Glycosyl composition of the EPS was glucose and galactose in α and β linkages, with pyruvate, succinate, and possibly malonate constituent groups. To evaluate the incorporation of C derived from protein associated with the EPS matrix, feeding experiments were conducted using EPS with and without proteins extracted. Black fly larvae incorporated 7.2 μg EPS C larva-1 d-1 from EPS that did not have proteins extracted, and 19.5 μg EPS C larva-1 d-1 from EPS with proteins extracted. Carbon in protein that is typically associated with EPS was not solely or selectively incorporated. EPS incorporation rates are similar to rates of cellular bacterial carbon incorporation previously estimated for Ogeechee River black fly larvae. If EPS is generally available as a food resource, the importance of bacteria in detrital food webs may be underestimated by studies that examine only the consumption of bacterial cells.

Journal of the North American Benthological Societ↗

USGS1992

Associations between benthic flora and diel changes in dissolved arsenic, phosphorus, and related physico-chemical parameters

Diel relationships between physical and chemical parameters and biomass were examined along a 57-km reach of Whitewood Creek, South Dakota, between 29 August and 2 September 1988. A time lag of ∼3-6 h for fluctuations in soluble reactive phosphorus (SRP) concentrations (ranging from 0.1 to 0.5 μM at the downstream sites) relative to dissolved arsenic (ranging from 0.3 to 1.2 μM as arsenate (pentavalent arsenic)) was consistent with our laboratory studies (reported elsewhere) showing preferential cell sorption of orthophosphate over arsenate by creek periphyton. The potential biological effects on SRP diel fluctuations contrasts with abiotic sorption controls for dissolved arsenate (a chemically similar anion). Cycles for pH, like water temperature cycles, lagged irradiance cycles by 1-3 h. Like pH, the amplitude of dissolved arsenic diel cycles was greatest at the site with most abundant biomass. Diel fluctuations in specific conductance (an indicator of groundwater inputs at elevated conductivity relative to the water column) were out of phase with both SRP and dissolved arsenic concentrations suggesting that groundwater was not the direct source of these solutes.

Freshwater Science↗

USGS1991

Isolation of poxvirus from debilitating cutaneous lesions on four immature grackles (Quiscalus sp.)

Poxvirus was isolated from nodules on four immature grackles ( Quiscalus sp.) collected in two residential areas of Victoria, Texas. All of the birds were emaciated and had nodules on the eyelids, bill, legs, toes, and areas of the skin on the wings, neck, and ventral abdomen. These pox nodules were extensive and probably interfered with both sight and flight. The preliminary diagnosis was confirmed by virus isolation, histopathology, and electron microscopy. Poxvirus was isolated on the chorioallantoic membrane of embryonated hen's eggs and in Muscovy duck embryo fibroblast cell culture. Phaenicia calliphoridae (blowfly) larvae were found in one of the pox nodules, raising the possibility of mechanical transmission of the virus by contaminated adult blowfiles.

Texas↗

USGS1967

Lead poisoning in a sample of Maryland mourning doves

A sick mourning dove ( Zenuidura macroura ) collected in Maryland with 2 lead shot in the gizzard showed acid-fast intranuclear inclusion bodies in the kidney tubular cells. The liver and the tibia contained 72 ppm and 187 ppm lead (wet weight) respectively. Four gizzards from 62 doves killed by hunters contained lead shot. The lead content of 43 dove livers ranged from 0.4-14.0 ppm (wet weight); 40 of these doves were collected by hunters, and the other 3 were dying of trichomoniasis.

Maryland↗

USGS1976

Avian botulism epizootiology on sewage oxidation ponds in Utah

In the microenvironment concept of avian botulism epizootiology, it is hypothesized that invertebrate carcasses may serve both as a substrate for toxin production by Clostridium botulinum type C and as a vehicle for toxin transmission to water birds. We field-tested that hypothesis by attempting to induce botulism in wing-clipped mallard ducks ( Anas platyrhynchos ) on sewage oxidation ponds in Utah. The experimental ponds were inoculated with C. botulinum spores in June 1974. Aquatic insect populations were monitored throughout the summer. Rotenone was used in August to kill insects in two ponds (one served as control), thereby providing potential substrate for clostridial growth and toxin production. Botulism was not detected among the birds even though they routinely ingested invertebrate carcasses. Samples of dead invertebrates contained no botulinum toxin. We concluded that the microenvironment concept, as it now stands, cannot always be a sufficient explanation of how type C botulism epizootics are initiated in nature. Other microbes may inhibit the growth of clostridial cells or destroy botulinum toxin.

Utah↗

USGS1986

Blood chemistry and hematocrit of captive and wild canvasbacks

Blood chemistry and packed cell volume (PCV) did not vary among groups of captive canvasbacks ( Aythya valisineria ) maintained ad libitum on 5 diets varying in metabolizable energy (ME) and protein. Ducks fed low quality diets increased their consumption so that all ducks were obtaining similar amounts of energy and protein. Some variables, including cholesterol, were found to differ between the sexes and ages of captive ducks. Seasonal differences were detected in the blood chemistry of captive canvasbacks. Four of the 5 enzyme values increased from October to January and then declined to April. PCV increased from 45 in October to 51 in April. Overall, blood chemistry values and PCV's were highly variable and did not appear to be good discriminators for age, sex, and diet of captive canvasbacks. Differences detected between captive and wild canvasbacks were attributed to increased stress of wild ducks during handling.

Journal of Wildlife Management↗

USGS1996

Implanting intra-abdominal radiotransmitters with external whip antennas in ducks

We developed and evaluated a surgical procedure for implanting intra-abdominal radiotransmitters with external whip antennas in captive mallards ( Anas platyrhynchos ). Transmitters were implanted in the abdominal cavity and the antennas exited through the caudal abdominal wall and skin. Birds with implanted transmitters developed mild to moderate localized air sac reactions. These reactions involved adhesions of the right anterior abdominal air sac to the liver with contractions around the transmitters and antenna catheters. The adhesions were reinforced by a proliferation of connective tissue and lined by multinucleated giant cells (foreign body reaction). Casual observation indicated that neither behavior nor activity of the birds was altered by the histological reaction to the transmitter implant. No increase in systemic lesions (particularly liver or kidney) could be correlated with the histological reactions. Our evaluations indicate that the procedure is a reliable method for radiomarking ducks and the technique has been successfully used in 2 field studies.

Journal of Wildlife Management↗

USGS2003

A multiscaled model of southwestern willow flycatcher breeding habitat

The southwestern willow flycatcher (SWFL; Empidonax traillii extimus) is an endangered songbird whose habitat has declined dramatically over the last century. Understanding habitat selection patterns and the ability to identify potential breeding areas for the SWFL is crucial to the management and conservation of this species. We developed a multiscaled model of SWTL breeding habitat with a Geographic Information System (GIS), survey data, GIS variables, and multiple logistic regressions. We obtained presence and absence survey data from a riverine ecosystem and a reservoir delta in south-central Arizona, USA, in 1999. We extracted the GIS variables from satellite imagery and digital elevation models to characterize vegetation and floodplain within the project area. We used multiple logistic regressions within a cell-based (30 X 30 m) modeling environment to (1) determine associations between GIS variables and breeding-site occurrence at different spatial scales (0.09-72 ha), and (2) construct a predictive model. Our best model explained 54% of the variability in breeding-site occurrence with the following variables: vegetation density at the site (0.09 ha), proportion of dense vegetation and variability in vegetation density within a 4.5-ha neighborhood, and amount of floodplain or flat terrain within a 41-ha neighborhood. The density of breeding sites was highest in areas that the model predicted to be most suitable within the project area and at an external test site 200 km away. Conservation efforts must focus on protecting not only occupied patches, but also surrounding riparian forests and floodplain to ensure long-term viability of SWTL. We will use the multiscaled model to map SWTL breeding habitat in Arizona, prioritize future survey effort, and examine changes in habitat abundance and quality over time.

Arizona↗

USGS1981

Species differences in hematological values of captive cranes, geese, raptors, and quail

Hematological and serum chemical constituents of blood were determined for 12 species, including 7 endangered species, of cranes, geese, raptors, and quail in captivity at the Patuxent Wildlife Research Center. Means, standard deviations, analysis of variance by species and sex, and a series of multiple comparisons of means were derived for each parameter investigated. Differences among some species means were observed in all blood parameters except gamma-glutamyl transpeptidase. Although sampled during the reproductively quiescent period, an influence of sex was noted in red blood cell count, hemoglobin, albumin, glucose, cholesterol, serum glutamic oxaloacetic transaminase, Ca, and P. Our data and values reported in literature indicate that most hematological parameters vary among species and, in some cases, according to methods used to determine them. Therefore, baseline data for captive and wild birds should be established by using standard methods, and should be made available to aid others for use in assessing physiological and pathological conditions of these species.

Journal of Wildlife Management↗

USGS1990

Effects of tillage practices and carbofuran exposure on small mammals

We compared population estimates, body mass, movement, and blood chemistry of small mammals between conventionally tilled and no-till cornfields in Maryland and Pennsylvania to evaluate the effects of tillage practices and carbofuran exposure on small mammals. Estimates suggest that populations of white-footed mice ( Peromyscus leucopus ) were not significantly related (P > 0.05) to tillage practice or to the presence of winter rye cover crops. Late summer differences in animal mass and movement, and in the proportion of reproductively inactive animals imply that characteristics of individuals and reproductive activity can be affected by tillage practices and winter cover crops. The presence of granular carbofuran had no apparent effect on populations, body mass, or movement in conventionally tilled or no-till fields. Similarly, neither red blood cell acetylcholinesterase, hematocrit, nor liver function were affected by carbofuran use.

Maryland, Pennsylvania↗

USGS1990

Minimizing capture-related stress on white-tailed deer with a capture collar

We compared the effect of 3 capture methods for white-tailed deer ( Odocoileus virginianus ) on blood indicators of acute excitement and stress from 1 February to 20 April 1989. Eleven adult females were captured by Clover trap or cannon net between 1 February and 9 April 1989 in northeastern Minnesota. These deer were fitted with radio-controlled capture collars, and 9 deer were recaptured 7-33 days later. Trapping method affected serum cortisol (P < 0.0001), hemoglobin (Hb) (P < 0.06), and packed cell volume (PCV) (P < 0.07). Cortisol concentrations were lower (P < 0.0001) in capture-collared deer (0.54 ± 0.07 [SE] μg/dL) compared to Clover-trapped (4.37 ± 0.69 μg/dL) and cannon-netted (3.88 ± 0.82 μg/dL) deer. Capture-collared deer were minimally stressed compared to deer captured by traditional methods. Use of the capture collar should permit more accurate interpretation of blood profiles of deer for assessement of condition and general health.

Minnesota↗

USGS1993

Multivariate model of female black bear habitat use for a Geographic Information System

Simple univariate statistical techniques may not adequately assess the multidimensional nature of habitats used by wildlife. Thus, we developed a multivariate method to model habitat-use potential using a set of female black bear ( Ursus americanus ) radio locations and habitat data consisting of forest cover type, elevation, slope, aspect, distance to roads, distance to streams, and forest cover type diversity score in the Ozark Mountains of Arkansas. The model is based on the Mahalanobis distance statistic coupled with Geographic Information System (GIS) technology. That statistic is a measure of dissimilarity and represents a standardized squared distance between a set of sample variates and an ideal based on the mean of variates associated with animal observations. Calculations were made with the GIS to produce a map containing Mahalanobis distance values within each cell on a 60- × 60-m grid. The model identified areas of high habitat use potential that could not otherwise be identified by independent perusal of any single map layer. This technique avoids many pitfalls that commonly affect typical multivariate analyses of habitat use and is a useful tool for habitat manipulation or mitigation to favor terrestrial vertebrates that use habitats on a landscape scale.

Arkansas↗

USGS1990

Effects of winter undernutrition on body composition and physiological profiles of white-tailed deer

We examined the effects of undernutrition and recovery on body composition and blood and urinary profiles of 6 captive white-tailed deer ( Odocoileus virginianus ) between 18 December 1984 and 3 May 1985. Deer were weighed, and blood and urine were collected every 2 weeks from 10 January to 3 May. At Weeks 2, 8, and 14, body composition was estimated by the dilution of tritiated water technique and standard predictive equations. Feed intake decreased and cumulative mass loss increased during nutritional restriction. Baseline body composition included 62.1 ± 0.9 (SE)% water, 11.9 ± 1.0% fat, 20.5 ± 0.7% protein, and 4.5 ± 0.0% ash. Percent protein loss was linearly related (r 2 = 0.91, P < 0.001) to percent mass loss. Peak mass loss from the beginning of the study (12.8 ± 2.0%) occurred at Week 12; estimated protein loss was 12.5%. Fat reserves were 85% depleted from Week 2 to Week 14. Elevated packed cell volume (PCV), serum calcium (Ca), cholesterol, triglycerides, and cortisol; and diminished serum urea nitrogen, thyroxine (T4), urinary urea nitrogen: creatinine and potassium: creatinine were associated with reduced food intake, mass loss, and decreases in body water, fat, and protein. Altered values of most of these blood and urinary characteristics reflected initiation of nutritional recovery after nutrition improved. Sequential data collection and the use of a combination of indices in blood or urine will yield the most useful assessments of animal nutrition and condition.

Minnesota↗

USGS2010

Cold cratonic roots and thermal blankets: How continents affect mantle convection

Two-dimensional convection models with moving continents show that continents profoundly affect the pattern of mantle convection . If the continents are wider than the wavelength of the convection cells (-3000 km, the thickness of the mantle ), they cause neighboring deep mantle thermal upwellings to coalesce into a single focused upwelling. This focused upwelling zone will have a potential temperature anomaly of about 200°C, much higher than the 100°C temperature anomaly of upwelling zones generated beneath typical oceanic lithosphere. Extensive high-temperature melts (including flood basalts and late potassic granites) will be produced, and the excess temperature anomaly will induce continental uplift (as revealed in sea level changes) and the eventual breakup of the supercontinent. The mantle thermal anomaly will persist for several hundred million years after such a breakup. In contrast, small continental blocks (<1000 km diameter) do not induce focused mantle upwelling zones. Instead, small continental blocks are dragged to mantle down-welling zones, where they spend most of their time, and will migrate laterally with the downwelling. As a result of sitting over relatively cold mantle (downwellings), small continental blocks are favored to keep their cratonic roots . This may explain the long-term survival of small cratonic blocks (e.g., the Yilgarn and Pilbara cratons of western Australia, and the West African craton). The optimum size for long-term stability of a continental block is <3000 km. These results show that continents profoundly affect the pattern of mantle convection . These effects are illustrated in terms of the timing and history of supercontinent breakup, the production of high-temperature melts, and sea level changes. Such two-dimensional calculations can be further refined and tested by three-dimensional numerical simulations of mantle convection with moving continental and oceanic plates.

International Geology Review↗

USGS2013

The vegetation outlook (VegOut): a new method for predicting vegetation seasonal greenness

The vegetation outlook (VegOut) is a geospatial tool for predicting general vegetation condition patterns across large areas. VegOut predicts a standardized seasonal greenness (SSG) measure, which represents a general indicator of relative vegetation health. VegOut predicts SSG values at multiple time steps (two to six weeks into the future) based on the analysis of "historical patterns" (i.e., patterns at each 1 km grid cell and time of the year) of satellite, climate, and oceanic data over an 18-year period (1989 to 2006). The model underlying VegOut capitalizes on historical climate-vegetation interactions and ocean-climate teleconnections (such as El Niño and the Southern Oscillation, ENSO) expressed over the 18-year data record and also considers several environmental characteristics (e.g., land use/cover type and soils) that influence vegetation's response to weather conditions to produce 1 km maps that depict future general vegetation conditions. VegOut provides regionallevel vegetation monitoring capabilities with local-scale information (e.g., county to sub-county level) that can complement more traditional remote sensing-based approaches that monitor "current" vegetation conditions. In this paper, the VegOut approach is discussed and a case study over the central United States for selected periods of the 2008 growing season is presented to demonstrate the potential of this new tool for assessing and predicting vegetation conditions.

GIScience and Remote Sensing↗

USGS1998

Lead poisoning and trace elements in common eiders Somateria mollissima from Finland

We collected carcasses of 52 common eider Somateria mollissima adults and ducklings and blood samples from 11 nesting eider hens in the Gulf of Finland near Helsinki in 1994, 1995 and 1996. Samples of liver tissue were analysed for arsenic, cadmium, chromium, copper, iron, lead, magnesium, manganese, mercury, molybdenum, selenium and zinc. Blood was analysed for lead, mercury and selenium. Most of the 21 adults examined at necropsy were emaciated with empty gizzards, and no ingested shotgun pellets or other metal were found in any of the birds. Three adult females had a combination of lesions and tissue lead residues characteristic of lead poisoning. Two of these birds had acid-fast intranuclear inclusion bodies in renal epithelial cells and high concentrations of lead (73.4 and 73.3 ppm; all liver residues reported on dry weight basis) in their livers. The third was emaciated with a liver lead concentration of 47.9 ppm. An adult male had a liver lead concentration of 81.7 ppm, which is consistent with severe clinical poisoning. Two other adults, one male and one female, had liver lead concentrations of 14.2 and 8.03 ppm, respectively. Lead concentrations in the blood of hens ranged from 0.11 to 0.63 ppm wet weight. Selenium residues of A?60 ppm were found in the livers of five adult males. Selenium concentrations in the blood of hens ranged from 1.18 to 3.39 ppm wet weight. Arsenic concentrations of 27.5-38.5 ppm were detected in the livers of four adult females. Detectable concentrations of selenium, mercury and molybdenum were found more frequently in the livers of adult males arriving on the breeding grounds than in incubating females, while the reverse was true for arsenic, lead and chromium. Mean concentrations of selenium, copper and molybdenum were higher in the livers of arriving males than in the livers of incubating hens, but hens had greater concentrations of iron and magnesium. Concentrations of trace elements were lower in the livers of ducklings than in the livers of adults.

Wildlife Biology↗

USGS2020

Mapping stream and floodplain geomorphic characteristics with the Floodplain and Channel Evaluation Tool (FACET) in the Mid-Atlantic Region, United States

Quantifying channel and floodplain geomorphic characteristics is essential for understanding and modeling sediment and nutrient dynamics in fluvial systems. The increased availability of high-resolution elevation data from light detection and ranging (lidar) has helped improve methods for extracting these metrics at a greater accuracy across regional scales. The Floodplain and Channel Evaluation Tool (FACET) was developed as an open source tool to calculate a suite of geomorphic metrics describing channel and floodplain geometry from high-resolution digital elevation models (DEMs), providing estimates of channel width, bank height, cross-sectional area, and floodplain extent. Field data from sites in the Chesapeake Bay and Delaware River watersheds were used to calibrate and validate FACET within five physiographic provinces in the Mid-Atlantic region of the United States. Stream banks were identified using either a slope-threshold method at cross sections which are automatically generated at a user-defined interval along the delineated stream network, or by applying a curvature-threshold method for grid cells within a buffered distance from the stream network. The floodplain extent was mapped using a height above nearest drainage (HAND) grid and empirical regression models built for each physiographic province relating the HAND threshold to drainage area. Other user-defined input parameters within FACET control the sensitivity of calculations to DEM resolution, relief, and stream order, allowing for the ability to optimize FACET at multiple scales and/or regions if field survey data are available for calibration. Geomorphic metrics derived from FACET are currently being used to develop predictive models to estimate bank erosion and floodplain deposition to enhance our understanding of watershed sediment and nutrient budgets.

Delaware, Maryland, New Jersey, New York, Pennsylv↗