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At least 1,693 records · Page 94Linked to original sources
USGS2012

Numerical models of salt marsh evolution: ecological, geomorphic, and climatic factors

Salt marshes are delicate landforms at the boundary between the sea and land. These ecosystems support a diverse biota that modifies the erosive characteristics of the substrate and mediates sediment transport processes. Here we present a broad overview of recent numerical models that quantify the formation and evolution of salt marshes under different physical and ecological drivers. In particular, we focus on the coupling between geomorphological and ecological processes and on how these feedbacks are included in predictive models of landform evolution. We describe in detail models that simulate fluxes of water, organic matter, and sediments in salt marshes. The interplay between biological and morphological processes often produces a distinct scarp between salt marshes and tidal flats. Numerical models can capture the dynamics of this boundary and the progradation or regression of the marsh in time. Tidal channels are also key features of the marsh landscape, flooding and draining the marsh platform and providing a source of sediments and nutrients to the marsh ecosystem. In recent years, several numerical models have been developed to describe the morphogenesis and long-term dynamics of salt marsh channels. Finally, salt marshes are highly sensitive to the effects of long-term climatic change. We therefore discuss in detail how numerical models have been used to determine salt marsh survival under different scenarios of sea level rise.

Reviews of Geophysics↗
USGS2012

Drivers of change in estuarine-coastal ecosystems: Discoveries from four decades of study in San Francisco Bay

Poised at the interface of rivers, ocean, atmosphere and dense human settlement, estuaries are driven by a large array of natural and anthropogenic forces. San Francisco Bay exemplifies the fast-paced change occurring in many of the world's estuaries, bays and inland seas in response to these diverse forces. We use observations from this particularly well-studied estuary to illustrate responses to six drivers that are common agents of change where land and sea meet: water consumption and diversion; human modification of sediment supply; introduction of non-native species; sewage input; environmental policy; and climate shifts. In San Francisco Bay, responses to these drivers include, respectively, shifts in the timing and extent of freshwater inflow and salinity intrusion; decreasing turbidity; restructuring of plankton communities; nutrient enrichment; elimination of hypoxia and reduced metal contamination of biota; and food web changes that decrease resistance of the estuary to nutrient pollution. Detection of these changes and discovery of their causes through environmental monitoring have been essential for establishing and measuring outcomes of environmental policies that aim to maintain high water quality and sustain services provided by estuarine-coastal ecosystems. The wide range of variability time scales and the multiplicity of interacting drivers place heavy demands on estuarine monitoring programs. But the San Francisco Bay case study illustrates why the imperative for monitoring has never been greater.

California↗
USGS2021

Integrated hydrology and operations modeling to evaluate climate change impacts in an agricultural valley irrigated with snowmelt runoff

Applying models to developed agricultural regions remains a difficult problem because there are no existing modeling codes that represent both the complex physics of the hydrology and anthropogenic manipulations to water distribution and consumption. We apply an integrated groundwater – surface water and hydrologic river operations model to an irrigated river valley in northwestern Nevada/northern California, United States to evaluate the impacts of climate change on snow-fed agricultural systems that use surface water and groundwater conjunctively. We explicitly represent individual surface water rights within the hydrologic model and allow the integrated code to change river diversions in response to earlier snowmelt runoff and water availability. Historically under-used supplemental groundwater rights are dynamically activated within the model to offset diminished surface water deliveries. The model accounts for feedbacks between the natural hydrology and anthropogenic stresses, which is a first-of-its-kind assessment of the impacts of climate change on individual water rights, and more broadly on river basin operations. Earlier snowmelt decreases annual surface water deliveries to all water rights, not just the junior water rights, owing to a lack of surface water storage in the upper river basin capable of capturing earlier runoff. Conversely, downstream irrigators with access to reservoir storage benefit from earlier runoff flowing past upstream points of diversion prior to the start of the irrigation season. Despite regional shifts toward greater reliance on groundwater for irrigation, crop consumption (a common surrogate for crop yield) decreases due to spatiotemporal changes in water supply that preferentially impact a subset of growers in the region.

California↗
USGS2021

Active Mars: A dynamic world

Mars exhibits diverse surface changes at all latitudes and all seasons. Active processes include impact cratering, aeolian sand and dust transport, a variety of slope processes, changes in polar ices, and diverse effects of seasonal CO 2 frost. The extent of surface change has been surprising and indicates that the present climate is capable of reshaping the surface. Activity has important implications for the Amazonian history of Mars: understanding processes is a necessary step before we can understand their implications and variations over time.

Journal of Geophysical Research: Planets↗
USGS2022

Orbital and in-situ investigation of periodic bedrock ridges in Glen Torridon, Gale Crater, Mars

Wind has been the dominant agent of landscape modification on Mars for the past ~3 billion years. Among the diversity of features formed by aeolian abrasion on the surface of Mars are periodic bedrock ridges (PBRs), a relatively recently recognized class of erosional bedforms on Mars for which Earth analogues are rare. Gale crater, the field site for NASA’s Mars Science Laboratory Curiosity rover since it landed there in 2012, contains a diverse and extensive record of aeolian deposition and erosion. This study focuses on a series of periodic, linear bedrock ridges that occur within the Fe/Mg-smectite clay-bearing Glen Torridon region of Aeolis Mons (informally Mount Sharp). During Curiosity’s exploration of the Glen Torridon region between sols ~2300-3080, the rover drove through this field of ridges, providing the first opportunity for the in situ observation of these enigmatic erosional features. This study characterizes the Glen Torridon ridges using orbiter and rover data to determine their morphology, spatial distribution, compositional and material properties, and association with other aeolian features in the area. Based on these observations, the Glen Torridon ridges are interpreted to be consistent with an origin as wind-eroded periodic bedrock ridges carved during the most recent exhumation of Mount Sharp into the present-day mound. Although there is evidence for multidirectional winds in the Glen Torridon region based on the orientation of modern ripples, megaripples, TARs and other bedrock indicators, the consistent orientation of the Glen Torridon ridges, coupled with morphologic asymmetries within the ridges, support formation and elongation of the Glen Torridon PBRs forms parallel to a net regional northerly wind direction in and around Gale crater.

Journal of Geophysical Research E: Planets↗
USGS2025

Shoreline seasonality of California’s beaches

We report on remote sensing techniques developed to characterize seasonal shoreline cycles from satellite-derived shoreline measurements. These techniques are applied to 22-yr of shoreline measurements for over 777 km of beach along California's 1,700-km coast, for which the general understanding is that shorelines exhibit winter-narrow and summer-recovery seasonality. We find that approximately 90% of beach transects exhibit significant and recurring seasonal cycles in the shoreline position. Seasonal shoreline excursions are twice as large in northern and central California (17.5–32.2 m) than southern California (7.3–15.9 m; interquartile ranges). Clustering analyses were effective at characterizing the temporal patterns of the seasonality, revealing that ∼459 km of beach (59%) exhibit winter-narrow conditions, whereas ∼189 km (24%) and ∼50 km (6.4%) exhibit spring-narrow and summer-narrow conditions, respectively. These spring- and summer-narrow conditions are most common in southern California, where they represent over half of the total length of beach shoreline. Multivariate analyses reveal that wave climate and geomorphic setting are significantly related to the magnitude and timing of shoreline seasonal cycles. Combinations of these variables explain 44% of the seasonality variance of the complete data set and 85% of the variance for a subset of 93 long (>1 km) continuous beaches. We conclude that diversity in waves and geomorphic setting along California cause a broad range of seasonal patterns in the shoreline. Combined, this indicates that the overly generalized “winter-narrow/summer-recovery” conventions for California beaches are not expressed universally and that shoreline seasonality is far more diverse than these simple canonical rules.

California↗
USGS2024

Controls on lake pelagic primary productivity: Formalizing the nutrient-color paradigm

Understanding controls on primary productivity is essential for describing ecosystems and their responses to environmental change. Lake primary production is strongly controlled by inputs of nutrients and colored dissolved organic matter. While past studies have developed mathematical models of this nutrient-color paradigm, broad empirical tests of these models are scarce. We used data from 58 diverse and globally distributed temperate lakes to test such a model and improve understanding and prediction of the controls on lake primary production. These lakes varied widely in size (0.02-2300 km2), pelagic gross primary production (20-8000 mg C m-2 d-1), and other characteristics. Across these diverse systems, and given relatively limited inputs, model predictions of primary production were highly correlated with observed values derived from high-frequency sensor data. Our analysis provides a model structure, including calibrated parameter estimates, that may be broadly useful for understanding current and future patterns in lake primary production.

JGR Biogeosciences↗
USGS2010

Age and origin of Cretaceous planktonic foraminifers from limestone of the Franciscan Complex near Laytonville, California

Detailed planktonic foraminiferal biostratigraphy from eight measured sections of Cretaceous limestone near Laytonville, California, indicates a composite sequence that extends in age from late Albian to early Turonian. The sequence contains seven biozones and two subzones based on the first and last appearance datums of planktonic foraminifers examined in thin section. Unequivocal biostratigraphic facing directions show four sections are right side up and four are reversed, and confirm the stratigraphic polarity employed in the paleomagnetic studies of Alvarez et al. (1980) and Tarduno et al. (1986). Temporal changes in the microfauna deviate from the global trend. Early Albian through early Cenomanian planktonic foraminiferal assemblages dominated by opportunistic, eurytopic species of Hedbergella and Globigerinelloides give way in the late Cenomanian to assemblages containing more abundant larger, heavily ornamented stenotopic species of Rotalipora and Praeglobotruncana typical of stratified Tethyan oceans. Radiolarian replacement chert increases slightly in the late Albian to early Cenomanian part of the Laytonville sequence and then decreases in the late Cenomanian and early Turonian. Benthic foraminifers show a similar decrease in abundance and diversity. We propose that this complex of biogenic and lithogenic patterns records transit via oceanic plate motion from a depositional site in the southern part of the paleoequatorial zone of high productivity, characterized by pronounced upwelling and habitat destabilization, perhaps augmented by topographic upwelling, to the central part of the equatorial zone dominated by biogenic calcite deposition. Our model of northward transit from below the equator supports the paleomagnetic determinations of Alvarez et al. (1980) and Tarduno et al. (1986). Arrival at the paleoequator coincided with the onset of stratification in the world ocean during the middle Cenomanian, indicated by the diversification of the more complex rotaliporids, and the subsequent intensification of oxygen-depleted intermediate waters in the latest Cenomanian to early Turonian. Two pulses in heterohelicid abundance signify the onset or intensification of an oxygen-minimum layer if Cretaceous heterohelicids occupied habitats analagous to Tertiary biserial heterohelicids. The first pulse beginning in the middle Cenomanian Rotalipora reicheli Zone may indicate a minor expansion of the oxygen-minimum zone or regional upwelling due to transit of the site beneath the equatorial divergence. The second pulse in the late Cenomanian Dicarinella algeriana Subzone signals the onset of upwelling of deeper oceanic water masses that characterized the succeeding Whiteinella archaeocretacea Zone. Organic-rich black shales typical of the Whiteinella archaeocretacea Zone are missing at Laytonville, although samples do contain the low-diversity, partially dissolved, planktonic assemblages that characterize this zone. The lack of black shales suggests that deposition occurred at depths greater than the oxygen-depleted intermediate water depths or alternately indicates paleoceanographic conditions unique to the Pacific.

California↗
USGS2013

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

Gut microbiota of invasive Asian silver carp (SVCP) and indigenous planktivorous gizzard shad (GZSD) in Mississippi river basin were compared using 16S rRNA gene pyrosequencing. Analysis of more than 440 000 quality-filtered sequences obtained from the foregut and hindgut of GZSD and SVCP revealed high microbial diversity in these samples. GZSD hindgut (GZSD_H) samples (n=23) with >7000 operational taxonomy units (OTUs) exhibited the highest alpha-diversity indices followed by SVCP foregut (n=15), GZSD foregut (n=9) and SVCP hindgut (SVCP_H) (n=24). UniFrac distance-based non-metric multidimensional scaling (NMDS) analysis showed that the microbiota of GZSD_H and SVCP_H were clearly separated into two clusters: samples in the GZSD cluster were observed to vary by sampling location and samples in the SVCP cluster by sampling date. NMDS further revealed distinct microbial community between foregut to hindgut for individual GZSD and SVCP. Cyanobacteria, Proteobacteria, Actinobacteria and Bacteroidetes were detected as the predominant phyla regardless of fish or gut type. The high abundance of Cyanobacteria observed was possibly supported by their role as the fish’s major food source. Furthermore, unique and shared OTUs and OTUs in each gut type were identified, three OTUs from the order Bacteroidales, the genus Bacillariophyta and the genus Clostridium were found significantly more abundant in GZSD_H (14.9–22.8%) than in SVCP_H (0.13–4.1%) samples. These differences were presumably caused by the differences in the type of food sources including bacteria ingested, the gut morphology and digestion, and the physiological behavior between GZSD and SVCP.

International Society for Microbial Ecology↗
USGS2012

Biodiversity loss and its impact on humanity

The most unique feature of Earth is the existence of life, and the most extraordinary feature of life is its diversity. Approximately 9 million types of plants, animals, protists and fungi inhabit the Earth. So, too, do 7 billion people. Two decades ago, at the first Earth Summit, the vast majority of the world's nations declared that human actions were dismantling the Earth's ecosystems, eliminating genes, species and biological traits at an alarming rate. This observation led to the question of how such loss of biological diversity will alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper.

Nature↗
USGS2023

Contribution of arsenic and uranium in private wells and community water systems to urinary biomarkers in US adults: The Strong Heart Study and the Multi-Ethnic Study of Atherosclerosis

Background Chronic exposure to inorganic arsenic (As) and uranium (U) in the United States (US) occurs from unregulated private wells and federally regulated community water systems (CWSs). The contribution of water to total exposure is assumed to be low when water As and U concentrations are low. Objective We examined the contribution of water As and U to urinary biomarkers in the Strong Heart Family Study (SHFS), a prospective study of American Indian communities, and the Multi-Ethnic Study of Atherosclerosis (MESA), a prospective study of racially/ethnically diverse urban U.S. communities. Methods We assigned residential zip code-level estimates in CWSs (µg/L) and private wells (90th percentile probability of As >10 µg/L) to up to 1485 and 6722 participants with dietary information and urinary biomarkers in the SHFS (2001–2003) and MESA (2000–2002; 2010–2011), respectively. Urine As was estimated as the sum of inorganic and methylated species, and urine U was total uranium. We used linear mixed-effects models to account for participant clustering and removed the effect of dietary sources via regression adjustment. Results The median (interquartile range) urine As was 5.32 (3.29, 8.53) and 6.32 (3.34, 12.48) µg/L for SHFS and MESA, respectively, and urine U was 0.037 (0.014, 0.071) and 0.007 (0.003, 0.018) µg/L. In a meta-analysis across both studies, urine As was 11% (95% CI: 3, 20%) higher and urine U was 35% (5, 73%) higher per twofold higher CWS As and U, respectively. In the SHFS, zip-code level factors such as private well and CWS As contributed 46% of variation in urine As, while in MESA, zip-code level factors, e.g., CWS As and U, contribute 30 and 49% of variation in urine As and U, respectively. Impact statement We found that water from unregulated private wells and regulated CWSs is a major contributor to urinary As and U (an estimated measure of internal dose) in both rural, American Indian populations and urban, racially/ethnically diverse populations nationwide, even at levels below the current regulatory standard. Our findings indicate that additional drinking water interventions, regulations, and policies can have a major impact on reducing total exposures to As and U, which are linked to adverse health effects even at low levels.

Journal of Exposure Science and Environmental Epid↗
USGS2025

Breeder turnover creates allelic variation in groups of gray wolves

Genetic diversity is an important driver affecting the health of wildlife populations. In cooperatively breeding species, human impacts and breeder turnover can affect genetic diversity in groups. We generally do not have strong inferences about how the genetic composition of a group changes through time as individuals are lost (e.g., die, emigrate) or adopted (e.g., immigrate). I wanted to know how breeder turnover, group size, and harvest affected the fluctuation of unique alleles in groups of gray wolves ( Canis lupus ) in Idaho, USA, during 2008–2020. Turnover of breeding males was strongly associated with allelic change in groups. Turnover of breeding females also had a strong association with allelic change in groups, but was not the most supported model. Harvest was strongly correlated with breeding female turnover but not breeding male turnover. Outside of breeding female turnover, harvest generally had little effect on allelic change in groups. Groups rarely adopted new individuals unless there was a breeding vacancy. I show that over time groups gain and lose alleles in roughly equal proportions, but there are episodic changes to alleles in groups as a function of breeding male turnover. These findings have implications for how we define and evaluate group persistence and breeder lineages in cooperative breeders. Such definitions have important implications for studying the evolution and maintenance of cooperative breeding. It may be beneficial to define characteristics and vital rates of groups based, at least in part, on their underlying genetics when such information can be obtained.

Idaho↗
USGS2018

Acquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis

Antimicrobial resistance (AMR) in bacterial pathogens threatens global health, though the spread of AMR bacteria and AMR genes between humans, animals, and the environment is still largely unknown. Here, we investigated the role of wild birds in the epidemiology of AMR Escherichia coli. Using next-generation sequencing, we characterized cephalosporin-resistant E. coli cultured from sympatric gulls and bald eagles inhabiting a landfill habitat in Alaska to identify genetic determinants conferring AMR, explore potential transmission pathways of AMR bacteria and genes at this site, and investigate how their genetic diversity compares to isolates reported in other taxa. We found genetically diverse E. coli isolates with sequence types previously associated with human infections and resistance genes of clinical importance, including blaCTX-M and blaCMY. Identical resistance profiles were observed in genetically unrelated E. coli isolates from both gulls and bald eagles. Conversely, isolates with indistinguishable core-genomes were found to have different resistance profiles. Our findings support complex epidemiological interactions including bacterial strain sharing between gulls and bald eagles and horizontal gene transfer among E. coli harboured by birds. Results suggest that landfills may serve as a source for AMR acquisition and/or maintenance, including bacterial sequence types and AMR genes relevant to human health.

Alaska↗
USGS2019

Genetic structure of Mycoplasma ovipneumoniae informs pathogen spillover dynamics between domestic and wild Caprinae in the western United States

Spillover diseases have significant consequences for human and animal health, as well as wildlife conservation. We examined spillover and transmission of the pneumonia-associated bacterium Mycoplasma ovipneumoniae in domestic sheep, domestic goats, bighorn sheep, and mountain goats across the western United States using 594 isolates, collected from 1984 to 2017. Our results indicate high genetic diversity of M. ovipneumoniae strains within domestic sheep, whereas only one or a few strains tend to circulate in most populations of bighorn sheep or mountain goats. These data suggest domestic sheep are a reservoir, while the few spillovers to bighorn sheep and mountain goats can persist for extended periods. Domestic goat strains form a distinct clade from those in domestic sheep, and strains from both clades are found in bighorn sheep. The genetic structure of domestic sheep strains could not be explained by geography, whereas some strains are spatially clustered and shared among proximate bighorn sheep populations, supporting pathogen establishment and spread following spillover. These data suggest that the ability to predict M. ovipneumoniae spillover into wildlife populations may remain a challenge given the high strain diversity in domestic sheep and need for more comprehensive pathogen surveillance.

Arizona, California, Colorado, Idaho, Kansas, Mont↗
USGS2021

Trophic niches of native and nonnative fishes along a river-reservoir continuum

Instream barriers can constrain dispersal of nonnative fishes, creating opportunities to test their impact on native communities above and below these barriers. Deposition of sediments in a river inflow to Lake Powell, USA resulted in creation of a large waterfall prohibiting upstream movement of fishes from the reservoir allowing us to evaluate the trophic niche of fishes above and below this barrier. We expected niche overlap among native and nonnative species would increase in local assemblages downstream of the barrier where nonnative fish diversity and abundance were higher. Fishes upstream of the barrier had more distinct isotopic niches and species exhibited a wider range in δ 15 N relative to downstream. In the reservoir, species were more constrained in δ 15 N and differed more in δ 13 C, representing a shorter, wider food web. Differences in energetic pathways and resource availability among habitats likely contributed to differences in isotopic niches. Endangered Razorback Sucker ( Xyrauchen texanus ) aggregate at some reservoir inflows in the Colorado River basin, and this is where we found the highest niche overlap among species. Whether isotopic niche overlap among adult native and nonnative species has negative consequences is unclear, because data on resource availability and use are lacking; however, these observations do indicate the potential for competition. Still, the impacts of diet overlap among trophic generalists, such as Razorback Sucker, are likely low, particularly in habitats with diverse and abundant food bases such as river-reservoir inflows.

Utah↗
USGS2023

Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat

Coral reefs are iconic ecosystems that support diverse, productive communities in both shallow and deep waters. However, our incomplete knowledge of cold-water coral (CWC) niche space limits our understanding of their distribution and precludes a complete accounting of the ecosystem services they provide. Here, we present the results of recent surveys of the CWC mound province on the Blake Plateau off the U.S. east coast, an area of intense human activity including fisheries and naval operations, and potentially energy and mineral extraction. At one site, CWC mounds are arranged in lines that total over 150 km in length, making this one of the largest reef complexes discovered in the deep ocean. This site experiences rapid and extreme shifts in temperature between 4.3 and 10.7 °C, and currents approaching 1 m s −1 . Carbon is transported to depth by mesopelagic micronekton and nutrient cycling on the reef results in some of the highest nitrate concentrations recorded in the region. Predictive models reveal expanded areas of highly suitable habitat that currently remain unexplored. Multidisciplinary exploration of this new site has expanded understanding of the cold-water coral niche, improved our accounting of the ecosystem services of the reef habitat, and emphasizes the importance of properly managing these systems.

Scientific Reports↗
USGS2025

A molecular specimen bank for contemporary and future study captures landscape-scale biodiversity baselines before Klamath River dam removal

Global restoration and conservation of freshwater biodiversity are represented in practice by works such as the Klamath River Renewal Project (KRRP), the largest dam removal and river restoration in the United States, which has reconnected 640 river kilometers. With dam removals, many biological outcomes remain understudied due to a lack of pre-impact data and complex ecosystem recovery timeframes. To avoid this, we created the KRRP molecular library, an environmental specimen bank, for long-term curation of environmental nucleic acids collected from the restoration project. We used these initial samples, environmental DNA metabarcoding, and generalized linear mixed-effects models to evaluate patterns of pre-dam removal fish richness and diversity. Demonstrating the suitability to resolve biological differences, the baseline shows that tributary and mainstem streams had greater native fish diversity and 2.3–10.7 times greater native fish species richness than reservoirs. These and future sampling efforts should, at a minimum, allow tracking of fish community response to ecosystem restoration. Anticipating the acceleration of omics innovation, we preserved samples for long-term storage and identified requisite phases for sustained function and adaptation of the molecular library: securing a physical storage facility for genetic material, establishing a governance structure, and confirming support for archive management.

California, Oregon↗
USGS2025

Alternating movement strategies of a tropical raptor

The majority of raptor species reside in the tropics, yet very little is known about their movement ecology. However, quantifying movement behavior can provide otherwise elusive information on resource needs, habitat selection, and ecological constraints, which is important for understanding ecological patterns and the management of species of conservation concern. On the Island of Hawai‘i, Hawai‘i, USA, the endemic ‘Io, or Hawaiian Hawk ( Buteo solitarius ), is a species of conservation concern that little is known of their movement ecology, yet they are dependent on a fragmented and rapidly changing environment. We tracked 15 individuals for up to 18 months across a diverse landscape on the eastern side of the island. We found that all ‘Io occupied a relatively small geographic area, their place of residency, where they spent all or most of their time. However, 10 individuals also exhibited an alternative movement pattern, where individuals repeatedly commuted back and forth between their place of residency to another, geographically disjunct location. These commuter periods, which could last from 24–180 days, were characterized by frequent (9–259) movements, with individual trips lasting 4–77 h away from their place of residency and 12–47 h in between commuter trips. In most cases, individuals went to the same non-contiguous commuting destination, even across multiple commuting sessions, indicating high fidelity to commuting locations. The ‘Io is a forest adapted Buteo but occurs across a diverse landscape from forest to agriculture lands to urban areas. Habitat selection analysis indicated high individual variation among different birds, but generally a preference for forest patches at localized levels. The discovery of the alternative commuting strategy for many ‘Io represents a cryptic movement pattern in the species, demonstrating the power of small, long-lived Global Position System tracking devices to track movement and providing important insights into the ecology of a tropical island raptor.

Hawaii↗