SEARCH · Geology Reports

Results for “Biodiversity”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,693 records · Page 94Linked to original sources

USGS2006

Restoration of breeding by snowy plovers following protection from disturbance

Promoting recreation and preserving wildlife are often dual missions for land managers, yet recreation may impact wildlife. Because individual disturbances are seemingly inconsequential, it is difficult to convince the public that there is a conservation value to restricting recreation to reduce disturbance. We studied threatened western snowy plovers (Charadrius alexandrinus nivosus) at a public beach (Sands Beach, Coal Oil Point Reserve) in Santa Barbara, California (USA) before and during a period when a barrier directed foot traffic away from a section of upper beach where snowy plovers roost. The barrier reduced disturbance rates by more than half. Snowy plovers increased in abundance (throughout the season) and their distribution contracted to within the protected area. Snowy plovers that were outside the protected area in the morning moved inside as people began using the beach. Experiments with quail eggs indicated an 8% daily risk of nest trampling outside the protected area. Before protection, plovers did not breed at Coal Oil Point. During protection, snowy plovers bred in increasing numbers each year and had high success at fledging young. These results demonstrate how recreational disturbance can degrade habitat for shorebirds and that protecting quality habitat may have large benefits for wildlife and small impacts to recreation. ?? Springer 2006.

Biodiversity and Conservation↗

USGS2005

Consequences of harvesting for genetic diversity in American ginseng (Panax quinquefolius L.): A simulation study

American ginseng, Panax quinquefolius L., is one of the most heavily traded medicinal plants in North America. The effect of harvest on genetic diversity in ginseng was measured with a single generation culling simulation program. Culling scenarios included random harvest at varying levels, legal limit random harvest and legal limit mature plant harvest. The legal limit was determined by the proportion of legally harvestable plants per population (% mature plants per population). Random harvest at varying levels resulted in significant loss of genetic diversity, especially allelic richness. Relative to initial levels, average within-population genetic diversity (H e) was significantly lower when plants were culled randomly at the legal limit (Mann-Whitney U = 430, p < 0.001) or when only mature plants were culled (Mann-Whitney U = 394, p < 0.01). Within-population genetic diversity was significantly higher with legal limit mature plant harvest (H e = 0.068) than when plants were culled randomly at the legal limit (H e = 0.064; U = 202, p < 0.01). Based on these simulations of harvest over one generation, we recommend that harvesting fewer than the proportion of mature plants could reduce the negative genetic effects of harvest on ginseng populations. ?? Springer 2005.

Biodiversity and Conservation↗

USGS2008

Spatially explicit decision support for selecting translocation areas for Mojave desert tortoises

Spatially explicit decision support systems are assuming an increasing role in natural resource and conservation management. In order for these systems to be successful, however, they must address real-world management problems with input from both the scientific and management communities. The National Training Center at Fort Irwin, California, has expanded its training area, encroaching U.S. Fish and Wildlife Service critical habitat set aside for the Mojave desert tortoise ( Gopherus agassizii ), a federally threatened species. Of all the mitigation measures proposed to offset expansion, the most challenging to implement was the selection of areas most feasible for tortoise translocation. We developed an objective, open, scientifically defensible spatially explicit decision support system to evaluate translocation potential within the Western Mojave Recovery Unit for tortoise populations under imminent threat from military expansion. Using up to a total of 10 biological, anthropogenic, and/or logistical criteria, seven alternative translocation scenarios were developed. The final translocation model was a consensus model between the seven scenarios. Within the final model, six potential translocation areas were identified.

Biodiversity and Conservation↗

USGS2008

Assessing the extent and diversity of riparian ecosystems in Sonora, Mexico

Conservation of forested riparian ecosystems is of international concern. Relatively little is known of the structure, composition, diversity, and extent of riparian ecosystems in Mexico. We used high- and low-resolution satellite imagery from 2000 to 2006, and ground-based sampling in 2006, to assess the spatial pattern, extent, and woody plant composition of riparian forests across a range of spatial scales for the state of Sonora, Mexico. For all 3rd and higher order streams, river bottomlands with riparian forests occupied a total area of 2,301 km2. Where forested bottomlands remained, on average, 34% of the area had been converted to agriculture while 39% remained forested. We estimated that the total area of riparian forest along the principal streams was 897 km2. Including fencerow trees, the total forested riparian area was 944 km2, or 0.5% of the total land area of Sonora. Ground-based sampling of woody riparian vegetation consisted of 92, 50 m radius circular plots. About 79 woody plant species were noted. The most important tree species, based on cover and frequency, were willow species Salix spp. (primarily S. goodingii and S. bonplandiana), mesquite species Prosopis spp. (primarily P. velutina), and Fremont cottonwood Populus fremontii. Woody riparian taxa at the reach scale showed a trend of increasing diversity from north to south within Sonora. Species richness was greatest in the willow-bald cypress Taxodium distichum var. mexicanum-Mexican cottonwood P. mexicana subsp. dimorphia ecosystem. The non-native tamarisk Tamarix spp. was rare, occurring at just three study reaches. Relatively natural stream flow patterns and fluvial disturbance regimes likely limit its establishment and spread. ?? 2008 Springer Science + Business Media BV.

Biodiversity and Conservation↗

USGS2008

Effects of spatial heterogeneity on butterfly species richness in Rocky Mountain National Park, CO, USA

We investigated butterfly responses to plot-level characteristics (plant species richness, vegetation height, and range in NDVI [normalized difference vegetation index]) and spatial heterogeneity in topography and landscape patterns (composition and configuration) at multiple spatial scales. Stratified random sampling was used to collect data on butterfly species richness from seventy-six 20 ?? 50 m plots. The plant species richness and average vegetation height data were collected from 76 modified-Whittaker plots overlaid on 76 butterfly plots. Spatial heterogeneity around sample plots was quantified by measuring topographic variables and landscape metrics at eight spatial extents (radii of 300, 600 to 2,400 m). The number of butterfly species recorded was strongly positively correlated with plant species richness, proportion of shrubland and mean patch size of shrubland. Patterns in butterfly species richness were negatively correlated with other variables including mean patch size, average vegetation height, elevation, and range in NDVI. The best predictive model selected using Akaike's Information Criterion corrected for small sample size (AICc), explained 62% of the variation in butterfly species richness at the 2,100 m spatial extent. Average vegetation height and mean patch size were among the best predictors of butterfly species richness. The models that included plot-level information and topographic variables explained relatively less variation in butterfly species richness, and were improved significantly after including landscape metrics. Our results suggest that spatial heterogeneity greatly influences patterns in butterfly species richness, and that it should be explicitly considered in conservation and management actions. ?? 2008 Springer Science+Business Media B.V.

Biodiversity and Conservation↗

USGS2011

Customizing a rangefinder for community-based wildlife conservation initiatives

Population size of many threatened and endangered species is relatively unknown because estimating animal abundance in remote parts of the world, without access to aircraft for surveying vast areas, is a scientific challenge with few proposed solutions. One option is to enlist local community members and train them in data collection for large line transect or point count surveys, but financial and sometimes technological constraints prevent access to the necessary equipment and training for accurately quantifying distance measurements. Such measurements are paramount for generating reliable estimates of animal density. This problem was overcome in a survey of Asiatic wild ass ( Equus hemionus ) in the Great Gobi B Strictly Protected Area, Mongolia, by converting an inexpensive optical sporting rangefinder into a species-specific rangefinder with visual-based categorical labels. Accuracy trials concluded 96.86% of 350 distance measures matched those from a laser rangefinder. This simple customized optic subsequently allowed for a large group of minimally-trained observers to simultaneously record quantitative measures of distance, despite language, education, and skill differences among the diverse group. The large community-based effort actively engaged local residents in species conservation by including them as the foundation for collecting scientific data.

Great Gobi B Strictly Protected Area↗

USGS2014

Disturbance to desert soil ecosystems contributes to dust-mediated impacts at regional scales

This review considers the regional scale of impacts arising from disturbance to desert soil ecosystems. Deserts occupy over one-third of the Earth’s terrestrial surface, and biological soil covers are critical to stabilization of desert soils. Disturbance to these can contribute to massive destabilization and mobilization of dust. This results in dust storms that are transported across inter-continental distances where they have profound negative impacts. Dust deposition at high altitudes causes radiative forcing of snowpack that leads directly to altered hydrological regimes and changes to freshwater biogeochemistry. In marine environments dust deposition impacts phytoplankton diazotrophy, and causes coral reef senescence. Increasingly dust is also recognized as a threat to human health.

Biodiversity and Conservation↗

USGS2014

Opposing resonses to ecological gradients structure amphibian and reptile communities across a temperate grassland-savanna-forest landscape

Temperate savannas are threatened across the globe. If we prioritize savanna restoration, we should ask how savanna animal communities differ from communities in related open habitats and forests. We documented distribution of amphibian and reptile species across an open-savanna–forest gradient in the Midwest U.S. to determine how fire history and habitat structure affected herpetofaunal community composition. The transition from open habitats to forests was a transition from higher reptile abundance to higher amphibian abundance and the intermediate savanna landscape supported the most species overall. These differences warn against assuming that amphibian and reptile communities will have similar ecological responses to habitat structure. Richness and abundance also often responded in opposite directions to some habitat characteristics, such as cover of bare ground or litter. Herpetofaunal community species composition changed along a fire gradient from infrequent and recent fires to frequent but less recent fires. Nearby (200-m) wetland cover was relatively unimportant in predicting overall herpetofaunal community composition while fire history and fire-related canopy and ground cover were more important predictors of composition, diversity, and abundance. Increased developed cover was negatively related to richness and abundance. This indicates the importance of fire history and fire related landscape characteristics, and the negative effects of development, in shaping the upland herpetofaunal community along the native grassland–forest continuum.

Indiana↗

USGS2015

Landscape-scale distribution and density of raptor populations wintering in anthropogenic-dominated desert landscapes

Anthropogenic development has great potential to affect fragile desert environments. Large-scale development of renewable energy infrastructure is planned for many desert ecosystems. Development plans should account for anthropogenic effects to distributions and abundance of rare or sensitive wildlife; however, baseline data on abundance and distribution of such wildlife are often lacking. We surveyed for predatory birds in the Sonoran and Mojave Deserts of southern California, USA, in an area designated for protection under the “Desert Renewable Energy Conservation Plan”, to determine how these birds are distributed across the landscape and how this distribution is affected by existing development. We developed species-specific models of resight probability to adjust estimates of abundance and density of each individual common species. Second, we developed combined-species models of resight probability for common and rare species so that we could make use of sparse data on the latter. We determined that many common species, such as red-tailed hawks, loggerhead shrikes, and especially common ravens, are associated with human development and likely subsidized by human activity. Species-specific and combined-species models of resight probability performed similarly, although the former model type provided higher quality information. Comparing abundance estimates with past surveys in the Mojave Desert suggests numbers of predatory birds associated with human development have increased while other sensitive species not associated with development have decreased. This approach gave us information beyond what we would have collected by focusing either on common or rare species, thus it provides a low-cost framework for others conducting surveys in similar desert environments outside of California.

California↗

USGS2016

Temporal bird community dynamics are strongly affected by landscape fragmentation in a Central American tropical forest region

Habitat loss and fragmentation are considered the main causes of species extinctions, particularly in tropical ecosystems. The objective of this work was to evaluate the temporal dynamics of tropical bird communities in landscapes with different levels of fragmentation in eastern Guatemala. We evaluated five bird community dynamic parameters for forest specialists and generalists: (1) species extinction, (2) species turnover, (3) number of colonizing species, (4) relative species richness, and (5) a homogeneity index. For each of 24 landscapes, community dynamic parameters were estimated from bird point count data, for the 1998–1999 and 2008–2009 periods, accounting for species’ detection probability. Forest specialists had higher extinction rates and a smaller number of colonizing species in landscapes with higher fragmentation, thus having lower species richness in both time periods. Alternatively, forest generalists elicited a completely different pattern, showing a curvilinear association to forest fragmentation for most parameters. Thus, greater community dynamism for forest generalists was shown in landscapes with intermediate levels of fragmentation. Our study supports general theory regarding the expected negative effects of habitat loss and fragmentation on the temporal dynamics of biotic communities, particularly for forest specialists, providing strong evidence from understudied tropical bird communities.

Biodiversity and Conservation↗

USGS2016

Assessments of species' vulnerability to climate change: From pseudo to science

Climate change vulnerability assessments (CCVAs) are important tools to plan for and mitigate potential impacts of climate change. However, CCVAs often lack scientific rigor, which can ultimately lead to poor conservation prioritization and associated ecological and economic costs. We discuss the need to improve comparability and consistency of CCVAs and either validate their findings or improve assessment of CCVA uncertainty and sensitivity to methodological assumptions.

Biodiversity and Conservation↗

USGS2017

Linking occupancy surveys with habitat characteristics to estimate abundance and distribution in an endangered cryptic bird

Accurate estimates of the distribution and abundance of endangered species are crucial to determine their status and plan recovery options, but such estimates are often difficult to obtain for species with low detection probabilities or that occur in inaccessible habitats. The Puaiohi ( Myadestes palmeri ) is a cryptic species endemic to Kauaʻi, Hawai‘i, and restricted to high elevation ravines that are largely inaccessible. To improve current population estimates, we developed an approach to model distribution and abundance of Puaiohi across their range by linking occupancy surveys to habitat characteristics, territory density, and landscape attributes. Occupancy per station ranged from 0.17 to 0.82, and was best predicted by the number and vertical extent of cliffs, cliff slope, stream width, and elevation. To link occupancy estimates with abundance, we used territory mapping data to estimate the average number of territories per survey station (0.44 and 0.66 territories per station in low and high occupancy streams, respectively), and the average number of individuals per territory (1.9). We then modeled Puaiohi occupancy as a function of two remote-sensed measures of habitat (stream sinuosity and elevation) to predict occupancy across its entire range. We combined predicted occupancy with estimates of birds per station to produce a global population estimate of 494 (95% CI 414–580) individuals. Our approach is a model for using multiple independent sources of information to accurately track population trends, and we discuss future directions for modeling abundance of this, and other, rare species.

Biodiversity and Conservation↗

USGS2019

Temporal gamma-diversity meets spatial alpha-diversity in dynamically varying ecosystems

Community measures collected at a single instance or over a short temporal period rarely provide a complete accounting of biological diversity. The gap between such “snapshot” measures of diversity and actual diversity can be especially large in systems that undergo great temporal variation in environmental conditions. To adequately quantify diversity in these temporally varying ecosystems, individual measures of diversity collected throughout the range of environmental variation, i.e., temporal alpha-diversity measures, must be combined to obtain temporal gamma-diversity. Such a time-integrated gamma-diversity measure will be a much closer approximation of a site’s true alpha-diversity and provide a measure better comparable to spatial alpha-diversity measures of sites with lower temporal variation for which a single or a few “snapshot” measures may suffice. We used aquatic-macroinvertebrate community-composition data collected over a 24-year period from a complex of 16 prairie-pothole wetlands to explore the rate that taxa accumulate over time at sites with differing degrees of temporal variation. Our results show that the rate of taxa accumulation over time, i.e., the slope of the species–time relationship, is steeper for wetlands with ponds that frequently dry compared to those with more-permanent ponds. Additionally, we found that a logarithmic function better fit species accumulation data for seasonally ponded wetlands whereas a power function better fit accumulations for permanently and semi-permanently ponded wetlands. Thus, interpretations of ecological diversity measures, and conservation decisions that rely on these interpretations, can be biased if temporal variations in community composition are not adequately represented.

North Dakota↗

USGS2020

A century of pollen foraging by the endangered rusty patched bumble bee (Bombus affinis): Inferences from molecular sequencing of museum specimens

In 2017 the rusty patched bumble bee ( Bombus affinis ) became the first bee listed under the Endangered Species Act in the continental United States due to population declines and an 87% reduction in the species’ distribution. Bombus affinis decline began in the 1990s, predating modern bee surveying initiatives, and obfuscating drivers of decline. While understood to be a highly generalist forager, little is known about the role that resource limitation or shifting floral community composition could have played in B. affinis decline. Determining which floral species support B. affinis could assist conservation efforts where B. affinis persists and identify floral species for restoration efforts. We constructed a historical foraging profile of B. affinis via DNA sequencing of pollen from museum specimens spanning seven states collected from 1913 to 2013. Molecular analysis revealed no temporal changes in the floral richness or composition of B. affinis pollen samples across our sampling period. Likewise, we found no temporal changes in the presence or proportion of native vs. introduced species in pollen samples, though we observed much greater use of introduced floral species than previously determined for B. affinis . Floral community composition was regionally dissimilar, inconsistent with patterns of B. affinis decline by state. Our results suggest B. affinis decline was unlikely to have been driven by spatial or temporal limitations of specific floral species. This work greatly expands the known forage of B. affinis and will provide managers with insight to aid the conservation of B. affinis .

Biodiversity and Conservation↗

USGS2021

Landscape characterization of floral resources for pollinators in the Prairie Pothole Region of the United States

Across agricultural areas of the Prairie Pothole Region (PPR), floral resources are primarily found on public grasslands, roadsides, and private grasslands used as pasture or enrolled in federal conservation programs. Little research has characterized the availability of flowers across the region or identified the primary stakeholders managing lands supporting pollinators. We explored spatial and temporal variability in flower abundance and richness across multiple grassland categories (i.e. general grassland, conservation grassland, and engineered pollinator habitat) in the PPR from 2015 to 2018 and used these data to estimate the number of flowering stems present across the region on private and public land holdings. Both flowering plant abundance and richness were greatest on engineered pollinator habitat, but this land category encompassed <0.01% of the total grassland area in the PPR. There was a steady decrease in flower abundance over the growing season across all land categories. We detected considerable variation in flower abundance and richness across grassland categories, indicating that not all natural or semi-natural covers provide similar value to pollinators. At a landscape scale, large land holdings such as privately-owned grasslands and Conservation Reserve Program lands contributed the greatest number of flowers by an order of magnitude, though these lands collectively did not support the greatest abundance of flowers per unit area. Our research depicts spatial and temporal variation in pollinator resources across the region. Further, our research will assist managers and policy makers in understanding the role of public and private lands and conservation programs in supporting pollinators.

Minnesota, North Dakota, South Dakota↗

USGS2022

Cryptic extinction risk in a western Pacific lizard radiation

Cryptic ecologies, the Wallacean Shortfall of undocumented species’ geographical ranges and the Linnaean Shortfall of undescribed diversity, are all major barriers to conservation assessment. When these factors overlap with drivers of extinction risk, such as insular distributions, the number of threatened species in a region or clade may be underestimated, a situation we term ‘cryptic extinction risk’. The genus Lepidodactylus is a diverse radiation of insular and arboreal geckos that occurs across the western Pacific. Previous work on Lepidodactylus showed evidence of evolutionary displacement around continental fringes, suggesting an inherent vulnerability to extinction from factors such as competition and predation. We sought to (1) comprehensively review status and threats, (2) estimate the number of undescribed species, and (3) estimate extinction risk in data deficient and candidate species, in Lepidodactylus . From our updated IUCN Red List assessment, 60% of the 58 recognized species are threatened (n = 15) or Data Deficient (n = 21), which is higher than reported for most other lizard groups. Species from the smaller and isolated Pacific islands are of greatest conservation concern, with most either threatened or Data Deficient, and all particularly vulnerable to invasive species. We estimated 32 undescribed candidate species and linear modelling predicted that an additional 18 species, among these and the data deficient species, are threatened with extinction. Focusing efforts to resolve the taxonomy and conservation status of key taxa, especially on small islands in the Pacific, is a high priority for conserving this remarkably diverse, yet poorly understood, lizard fauna. Our data highlight how cryptic ecologies and cryptic diversity combine and lead to significant underestimation of extinction risk.

Biodiversity and Conservation↗

USGS2022

Automatic recorders monitor wolves at rendezvous sites: do wolves adjust howling to live near humans?

We used automatic sound recorders to study spontaneous vocalizations of wild wolves during the pup-rearing season around rendezvous sites from 24 wolf packs in six study areas across North America, Asia, and Europe. Between 2018 and 2021, for a total of 1225 pack-days, we recorded 605 spontaneous wolf chorus howls and 224 solo-howl series. Howling occurrence varied across areas, from 12.50 to 94.12% days with howling. Daily howling ranged from 0.00 to 3.47 solo howls/day and 0.13 to 5.29 chorus howls/day. Generally, spontaneous chorus howls peaked between sunset and sunrise. Howling rate depended on area, pack size, and density of people living nearby, being greater where fewer people lived. High rates in Yellowstone National Park, (800,000+ visitors during the study) could reflect accommodation to human activities such as wolf watching. One to six automatic recorders per site within 1000 m of rendezvous sites needed 4–15 days to detect the pack (average 9.5) and 5–21 days (average 11.3) to detect pups, both with a probability of 95%. Our results may guide wolf-monitoring programs using automatic sound recorders, a promising method offering advantages over howling surveys, especially in human-dominated landscapes.

Biodiversity and Conservation↗

USGS2024

Are threatened seabird colonies of the Pacific Ocean genetically vulnerable? The case of the red-tailed tropicbird, Phaethon rubricauda, as a model species

Oceanic seabirds have suffered population declines and extirpations due to human disturbance and still face multiple threats. Here, we assessed the potential genetic vulnerability of the red-tailed tropicbird, Phaethon rubricauda , a seabird species threatened by human disturbance and listed as ‘least concern’ by the IUCN. Using Single Nucleotide Polymorphisms (SNPs) we evaluated the genetic population structure of the red-tailed tropicbird throughout the Pacific Ocean using samples from 132 individuals from six islands. We sampled individuals from islands without human-related disturbance (non-impacted islands) and with human-related disturbance (impacted islands). Results of genome-wide SNP analyses were consistent with previous results using mitochondrial DNA sequences analyses. Genetic diversity did not differ between impacted and non-impacted islands, and low inbreeding estimates were detected for all colonies. The SNPs analyses confirmed a pattern of isolation by distance and significant inter-regional (Chile, Australasia, and Hawaiʻi) genetic structure, but revealed greater differentiation of tropicbirds in Hawaiʻi compared with Chile and Australasia. Within regions, our results further indicated significant differentiation between Rapa Nui and Salas & Gómez Island (Chile), and between Meyer and Phillip islands (Australasia) that was not detected using mitochondrial DNA analyses. Within Hawaiʻi, we found a lack of significant genetic differentiation between Oʻahu and Kauaʻi, separated by 200 km. Our findings indicated that red-tailed tropicbird colonies are at genetic risk due to limited dispersal among colonies which may reduce the fitness of the species in the long-term. We suggest that red-tailed tropicbird colonies are vulnerable to future population declines because recovery through immigration from other islands may be limited by geographic distance. Conservation actions will help preserve genetic diversity and discrete populations for this native seabird at colonies throughout the Pacific.

Biodiversity and Conservation↗