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Development, Testing, and Sensitivity and Uncertainty Analyses of a Transport and Reaction Simulation Engine (TaRSE) for Spatially Distributed Modeling of Phosphorus in South Florida Peat Marsh Wetlands

Alterations to the predevelopment delivery of water and nutrients into the Everglades of southern Florida have been occurring for nearly a century. Major regional drainage projects, large-scale agricultural development, and changes to the hydrology of the Kissimmee River-Lake Okeechobee watershed have resulted in substantial phosphorus transport increases by surface waters. Excess phosphorus has accumulated in the soils of northern Everglades marshes to levels that have impaired the natural resources of the region. Regulations now limit the amount of phosphorous that enters the Everglades through an extensive network of water-control structures. This study involved the development and application of water-quality modeling components that may be applied to existing hydrologic models of southern Florida to evaluate the effects of different management scenarios. The result of this work is a spatially distributed water-quality model for phosphorus transport and cycling in wetlands. The model solves the advection-dispersion equation on an unstructured triangular mesh and incorporates a wide range of user-selectable mechanisms for phosphorus uptake and release parameters. In general, the phosphorus model contains transfers between stores; examples of stores that can be included are soil, water column (solutes), pore water, macrophytes, suspended solids (plankton), and biofilm. Examples of transfers are growth, senescence, settling, diffusion, and so forth, described with first order, second order, and Monod types of transformations. Local water depths and velocities are determined from an existing two-dimensional, overland-flow hydrologic model. The South Florida Water Management District Regional Simulation Model was used in this study. The model is applied to three case studies: intact cores of wetland soils with water, outdoor mesocosoms, and a large constructed wetland; namely, Cell 4 of Stormwater Treatment Area 1 West (STA-1W Cell 4). Different levels of complexity in the phosphorus cycling mechanisms were simulated in these case studies using different combinations of phosphorus reaction equations. Changes in water column phosphorus concentrations observed under the controlled conditions of laboratory incubations, and mesocosm studies were reproduced with model simulations. Short-term phosphorus flux rates and changes in phosphorus storages were within the range of values reported in the literature, whereas unknown rate constants were used to calibrate the model output. In STA-1W Cell 4, the dominant mechanism for phosphorus flow and transport is overland flow. Over many life cycles of the biological components, however, soils accrue and become enriched in phosphorus. Inflow total phosphorus concentrations and flow rates for the period between 1995 and 2000 were used to simulate Cell 4 phosphorus removal, outflow concentrations, and soil phosphorus enrichment over time. This full-scale application of the model successfully incorporated parameter values derived from the literature and short-term experiments, and reproduced the observed long-term outflow phosphorus concentrations and increased soil phosphorus storage within the system. A global sensitivity and uncertainty analysis of the model was performed using modern techniques such as a qualitative screening tool (Morris method) and the quantitative, variance-based, Fourier Amplitude Sensitivity Test (FAST) method. These techniques allowed an in-depth exploration of the effect of model complexity and flow velocity on model outputs. Three increasingly complex levels of possible application to southern Florida were studied corresponding to a simple soil pore-water and surface-water system (level 1), the addition of plankton (level 2), and of macrophytes (level 3). In the analysis for each complexity level, three surface-water velocities were considered that each correspond to residence times for the selected area (1-kilometer long) of 2, 10, and 20

Scientific Investigations Report↗

Proceedings of the U.S. Geological Survey Seventh Biennial Geographic Information Science Workshop, Denver, Colorado, May 12-16, 2008

The U.S. Geological Survey (USGS) Seventh Biennial Geographic Information Science (GIS) Workshop (USGS-GIS 2008) on May 12 through 16, 2008, at the Denver Federal Center in Denver, Colorado, is unique in that it brings together GIS professionals from all of the USGS disciplines across all regions, and focuses primarily on the needs and accomplishments of the USGS. The theme for the 2008 workshop, “GIS for Tomorrow’s Challenges,” provides an opportunity for USGS GIS professionals to demonstrate how they have responded to the challenges set forth in the USGS Science Strategy (http://www.usgs.gov/science_ strategy/). During this workshop, attendees will have an opportunity to present or demonstrate their work; develop their knowledge by attending hands-on workshops and presentations given by professionals from the USGS and other Federal agencies, GIS-related companies, and academia; and to network with other professionals to develop collaborative opportunities. In addition to participation in numerous workshops and presentations, attendees will have opportunities to listen to top-level managers from the USGS present updates and goals concerning the future of several USGS programs. Monday evening’s Star Guest presentation by Thomas Wagner, NSF Office of Polar Programs, and Paul Morin, Antarctic Geospatial Information Center, entitled “Mapping all that is White: Antarctic Science and Operations Viewed Though Geospatial Data,” will be one of many valuable presentations. This Proceedings volume will serve as an activity reference for workshop attendees, as well as an archive of technical abstracts presented at the workshop. Author, co-author, and presenter names, affiliations, and contact information are listed with presentation titles with the abstracts. Some hands-on sessions are offered twice; in these instances, abstracts submitted for publication are presented in the proceedings on both days on which they are offered. All acronyms used in these proceedings are explained in the text of each abstract.

Scientific Investigations Report↗

Flood of April 2007 in New Hampshire

During April 16-18, 2007, central and southeastern New Hampshire experienced severe flooding as a result of up to 7 inches of rainfall from a storm that stalled off the New England coast. As a result of the flooding, a Presidential Disaster Declaration was issued on April 27, 2007. On that day, disaster declarations were announced for Grafton, Hillsborough, Merrimack, Rockingham, and Strafford Counties. On May 10, 2007, Belknap County was added to the disaster declaration. Following the flooding, the U.S. Geological Survey, in a cooperative investigation with the Federal Emergency Management Agency, determined the peak stages, peak discharges, and recurrence-interval estimates of the April 2007 flood at 57 streamgages and 4 ungaged sites in and adjacent to the counties named in the disaster declaration. Data from flood-insurance studies published by the Federal Emergency Management Agency also were compiled for each streamgage site for comparison purposes. The peak discharges during the April 2007 flood were the highest ever recorded at five long-term (more than 10 years of record) streamgage sites on the New Hampshire-Salmon Falls River at Milton, Cocheco River near Rochester, Oyster River near Durham, Contoocook River at Peterborough, and South Branch Piscataquog River near Goffstown. In addition, peak discharges equaled or exceeded a 100-year recurrence interval at 10 streamgages and a 50-year recurrence interval at 16 streamgages. The most severe flooding occurred in Rockingham, Strafford, Merrimack, and Hillsborough Counties.

Scientific Investigations Report↗

Occurrence of organic wastewater compounds in the Tinkers Creek watershed and two other tributaries to the Cuyahoga River, northeast Ohio

The U.S. Geological Survey - in cooperation with the Ohio Water Development Authority; National Park Service; Cities of Aurora, Bedford, Bedford Heights, Solon, and Twinsburg; and Portage and Summit Counties - and in collaboration with the Ohio Environmental Protection Agency, did a study to determine the occurrence and distribution of organic wastewater compounds (OWCs) in the Tinkers Creek watershed in northeastern Ohio. In the context of this report, OWCs refer to a wide range of compounds such as antibiotics, prescription and nonprescription pharmaceuticals, personal-care products, household and industrial compounds (for example, antimicrobials, fragrances, surfactants, fire retardants, and so forth) and a variety of other chemicals. Canisters containing polar organic integrative sampler (POCIS) and semipermeable membrane device (SPMD) media were deployed instream for a 28-day period in Mayand June 2006 at locations upstream and downstream from seven wastewater-treatment-plant (WWTP) outfalls in the Tinkers Creek watershed, at a site on Tinkers Creek downstream from all WWTP discharges, and at one reference site each in two nearby watersheds (Yellow Creek and Furnace Run) that drain to the Cuyahoga River. Streambed-sediment samples also were collected at each site when the canisters were retrieved. POCIS and SPMDs are referred to as 'passive samplers' because they sample compounds that they are exposed to without use of mechanical or moving parts. OWCs detected in POCIS and SPMD extracts are referred to in this report as 'detections in water' because both POCIS and SPMDs provided time-weighted measures of concentration in the stream over the exposure period. Streambed sediments also reflect exposure to OWCs in the stream over a long period of time and provide another OWC exposure pathway for aquatic organisms. Four separate laboratory methods were used to analyze for 32 antibiotic, 20 pharmaceutical, 57 to 66 wastewater, and 33 hydrophobic compounds. POCIS and streambed-sediment extracts were analyzed by both the pharmaceutical and wastewater methods. POCIS extracts also were analyzed by the antibiotic method, and SPMD extracts were analyzed by the hydrophobic-compound method. Analytes associated with a given laboratory method are referred to in aggregate by the method name (for example, antibiotic-method analytes are referred to as 'antibiotic compounds') even though some analytes associated with the method may not be strictly classified as such. In addition, some compounds were included in the analyte list for more than one laboratory method. For a given sample matrix, individual compounds detected by more than one analytical method are included independently in counts for each method. A total of 12 antibiotic, 20 pharmaceutical, 41 wastewater, and 22 hydrophobic compounds were detected in water at one or more sites. Eight pharmaceutical and 37 wastewater compounds were detected in streambed sediments. The numbers of detections at reference sites tended to be in the low range of detection counts observed in the Tinkers Creek watershed for a given analytical method. Also, the total numbers of compounds detected in water and sediment at the reference sites were less than the total numbers of compounds detected at sites in the Tinkers Creek watershed. With the exception of hydrophobic compounds, it was common at most sites to have more compounds detected in samples collected downstream from WWTP outfalls than in corresponding samples collected upstream from the outfalls. This was particularly true for antibiotic, pharmaceutical, and wastewater compounds in water. In contrast, it was common to have more hydrophobic compounds detected in samples collected upstream from WWTP outfalls than downstream. Caffeine, fluoranthene, N,N-diethyl-meta-toluamide (DEET), phenanthrene, and pyrene were detected in water at all sites in the Tinkers Creek watershed, irrespective of whether the site was upstream or downs

Ohio↗

Assessing gas-hydrate prospects on the North Slope of Alaska—Theoretical considerations

Gas-hydrate resource assessment on the Alaska North Slope using 3-D and 2-D seismic data involved six important steps: (1) determining the top and base of the gas-hydrate stability zone, (2) 'tying' well log information to seismic data through synthetic seismograms, (3) differentiating ice from gas hydrate in the permafrost interval, (4) developing an acoustic model for the reservoir and seal, (5) developing a method to estimate gas-hydrate saturation and thickness from seismic attributes, and (6) assessing the potential gas-hydrate prospects from seismic data based on potential migration pathways, source, reservoir quality, and other relevant geological information. This report describes the first five steps in detail using well logs and provides theoretical backgrounds for resource assessments carried out by the U.S. Geological Survey. Measured and predicted P-wave velocities enabled us to tie synthetic seismograms to the seismic data. The calculated gas-hydrate stability zone from subsurface wellbore temperature data enabled us to focus our effort on the most promising depth intervals in the seismic data. A typical reservoir in this area is characterized by the P-wave velocity of 1.88 km/s, porosity of 42 percent, and clay volume content of 5 percent, whereas seal sediments encasing the reservoir are characterized by the P-wave velocity of 2.2 km/s, porosity of 32 percent, and clay volume content of 20 percent. Because the impedance of a reservoir without gas hydrate is less than that of the seal, a complex amplitude variation with respect to gas-hydrate saturation is predicted, namely polarity change, amplitude blanking, and high seismic amplitude (a bright spot). This amplitude variation with gas-hydrate saturation is the physical basis for the method used to quantify the resource potential of gas hydrates in this assessment.

Scientific Investigations Report↗

Intertonguing of the lower part of the Uinta Formation with the upper part of the Green River Formation in the Piceance Creek Basin during the late stages of Lake Uinta

During most of middle Eocene time, a 1,500-mi 2 area between the Colorado and White Rivers in northwestern Colorado was occupied by the Piceance lobe of Lake Uinta. This initially freshwater lake became increasingly saline throughout its history. Sediments accumulating in the lake produced mostly clay shale, limestone, and dolomite containing varying concentrations of organic matter. At the time of the maximum extent of the lake, the organic-rich Mahogany bed of the Green River Formation was deposited throughout the area. Shortly after its deposition, stream deposits began infilling the lake from the north through a series of contractions interspersed with minor expansions. This fluctuation of the shoreline resulted in the intertonguing of the stream sediments of the lower part of the overlying Uinta Formation with the lacustrine sediments of the upper part of the Green River over a distance of about 40 mi; construction of regional stratigraphic cross sections show the pattern of intertonguing in considerable detail. The data utilized in this study, which covered parts of Rio Blanco, Garfield, and Mesa counties, was derived from (1) geologic mapping of thirty-four 7 ½-minute quadrangles and stratigraphic studies by geologists of the U.S. Geological Survey, and (2) shale-oil assay information from numerous cores. As a result of this previous work and the additional effort involved in the compilation here presented, more than a dozen Green River Formation tongues have been named, some formally, others informally. Middle Eocene strata above the Mahogany bed in the northern part of the study area are dominantly coarse clastics of the Uinta Formation. The sedimentary sequence becomes more calcareous and organic-rich to the south where, in a 400-mi 2 area, a 250 ft-thick sequence of oil shale above the Mahogany bed contains an average of 16 gallons of oil per ton of shale and is estimated to contain 73 billion barrels of oil.

Scientific Investigations Report↗

Water Quality and Hydrology of Whitefish (Bardon) Lake, Douglas County, Wisconsin, With Special Emphasis on Responses of an Oligotrophic Seepage Lake to Changes in Phosphorus Loading and Water Level

Whitefish Lake, which is officially named Bardon Lake, is an oligotrophic, soft-water seepage lake in northwestern Wisconsin, and classified by the Wisconsin Department of Natural Resources as an Outstanding Resource Water. Ongoing monitoring of the lake demonstrated that its water quality began to degrade (increased phosphorus and chlorophyll a concentrations) around 2002 following a period of high water level. To provide a better understanding of what caused the degradation in water quality, and provide information to better understand the lake and protect it from future degradation, the U.S. Geological Survey did a detailed study from 2004 to 2008. The goals of the study were to describe the past and present water quality of the lake, quantify water and phosphorus budgets for the lake, simulate the potential effects of changes in phosphorus inputs on the lake's water quality, analyze changes in the water level in the lake since 1900, and relate the importance of changes in climate and changes in anthropogenic (human-induced) factors in the watershed to the water quality of the lake. Since 1998, total phosphorus concentrations increased from near the 0.005-milligrams per liter (mg/L) detection limit to about 0.010 mg/L in 2006, and then decreased slightly in 2007-08. During this time, chlorophyll a concentrations and Secchi depths remained relatively stable at about 1.5 micrograms per liter (ug/L) and 26 feet, respectively. Whitefish Lake is typically classified as oligotrophic. Because the productivity in Whitefish Lake is limited by phosphorus, phosphorus budgets were constructed for the lake. Because it was believed that much of its phosphorus comes from the atmosphere, phosphorus deposition was measured in this study. Phosphorus input from the atmosphere was greater than computed based on previously reported wetfall phosphorus concentrations. The concentrations and deposition rates can be used to estimate atmospheric loading in future lake studies. The average annual load of phosphorus to the lake was 232 pounds: 56 percent from precipitation, 27 percent from groundwater, and 16 percent from septic systems. During a series of dry years (low water levels) and wet years (high water levels), the inputs of water and phosphorus ranged by only 10-13 percent. Results from the Canfield and Bachmann eutrophication model and Carlson trophic-state-index equations demonstrated that the lake directly responds to changes in external phosphorus loading, with percent change in chlorophyll a being similar to the percent change in loading and the change in total phosphorus and Secchi depth being slightly smaller. Therefore, changes in phosphorus loading should affect the water quality of the lake. Specific scenarios that simulated the effects of anthropogenic (human-induced) and climatic (water level) changes demonstrated that: surface-water inflow (runoff) based on current development has little effect on pelagic water quality, changes in the inputs from septic systems and development in the watershed could have a large effect on water quality, and decreases in water and phosphorus loading during periods of low water level had little effect on water quality. Sustained high water levels, resulting from several wet years with relatively high water and phosphorus input, however, could cause a small degradation in water quality. Although high water levels may be associated with a degradation in water quality, it appears that anthropogenic changes in the watershed may be more important in affecting the future water quality of the lake. Fluctuations in water levels since 1998 are representative of what has occurred since 1900, with fluctuations of about 3 feet occurring about every 15 years. Based on total phosphorus concentrations inferred from sediment core analysis, there has been little long-term change in water quality and there has been a slight deterioration in water quality following most periods of high water levels. There

Scientific Investigations Report↗

Development, Testing, and Application of a Coupled Hydrodynamic Surface-Water/Groundwater Model (FTLOADDS) with Heat and Salinity Transport in the Ten Thousand Islands/Picayune Strand Restoration Project Area, Florida

A numerical model application was developed for the coastal area inland of the Ten Thousand Islands (TTI) in southwestern Florida using the Flow and Transport in a Linked Overland/Aquifer Density-Dependent System (FTLOADDS) model. This model couples a two-dimensional dynamic surface-water model with a three-dimensional groundwater model, and has been applied to several locations in southern Florida. The model application solves equations for salt transport in groundwater and surface water, and also simulates surface-water temperature using a newly enhanced heat transport algorithm. One of the purposes of the TTI application is to simulate hydrologic factors that relate to habitat suitability for the West Indian Manatee. Both salinity and temperature have been shown to be important factors for manatee survival. The inland area of the TTI domain is the location of the Picayune Strand Restoration Project, which is designed to restore predevelopment hydrology through the filling and plugging of canals, construction of spreader channels, and the construction of levees and pump stations. The effects of these changes are simulated to determine their effects on manatee habitat. The TTI application utilizes a large amount of input data for both surface-water and groundwater flow simulations. These data include topography, frictional resistance, atmospheric data including rainfall and air temperature, aquifer properties, and boundary conditions for tidal levels, inflows, groundwater heads, and salinities. Calibration was achieved by adjusting the parameters having the largest uncertainty: surface-water inflows, the surface-water transport dispersion coefficient, and evapotranspiration. A sensitivity analysis did not indicate that further parameter changes would yield an overall improvement in simulation results. The agreement between field data from GPS-tracked manatees and TTI application results demonstrates that the model can predict the salinity and temperature fluctuations which affect manatee behavior. Comparison of the existing conditions simulation with the simulation incorporating restoration changes indicated that the restoration would increase the period of inundation for most of the coastal wetlands. Generally, surface-water salinity was lowered by restoration changes in most of the wetlands areas, especially during the early dry season. However, the opposite pattern was observed in the primary canal habitat for manatees, namely, the Port of the Islands. Salinities at this location tended to be moderately elevated during the dry season, and unchanged during the wet season. Water temperatures were in close agreement between the existing conditions and restoration simulations, although minimum temperatures at the Port of the Islands were slightly higher in the restoration simulation as a result of the additional surface-water ponding and warming that occurs in adjacent wetlands. The TTI application output was used to generate salinity and temperature time series for comparison to manatee field tracking data and an individually-based manatee-behavior model. Overlaying field data with salinity and temperature results from the TTI application reflects the effect of warm water availability and the periodic need for low-salinity drinking water on manatee movements. The manatee-behavior model uses the TTI application data at specific model nodes along the main manatee travel corridors to determine manatee migration patterns. The differences between the existing conditions and restoration scenarios can then be compared for manatee refugia. The TTI application can be used to test a variety of hydrologic conditions and their effect on important criteria.

Scientific Investigations Report↗

StreamStats in Oklahoma– Drainage-basin characteristics and peak-flow frequency statistics for ungaged streams

The USGS Streamflow Statistics (StreamStats) Program was created to make geographic information systems-based estimation of streamflow statistics easier, faster, and more consistent than previously used manual techniques. The StreamStats user interface is a map-based internet application that allows users to easily obtain streamflow statistics, basin characteristics, and other information for user-selected U.S. Geological Survey data-collection stations and ungaged sites of interest. The application relies on the data collected at U.S. Geological Survey streamflow-gaging stations, computer aided computations of drainage-basin characteristics, and published regression equations for several geographic regions comprising the United States. The StreamStats application interface allows the user to (1) obtain information on features in selected map layers, (2) delineate drainage basins for ungaged sites, (3) download drainage-basin polygons to a shapefile, (4) compute selected basin characteristics for delineated drainage basins, (5) estimate selected streamflow statistics for ungaged points on a stream, (6) print map views, (7) retrieve information for U.S. Geological Survey streamflow-gaging stations, and (8) get help on using StreamStats. StreamStats was designed for national application, with each state, territory, or group of states responsible for creating unique geospatial datasets and regression equations to compute selected streamflow statistics. With the cooperation of the Oklahoma Department of Transportation, StreamStats has been implemented for Oklahoma and is available at http://water.usgs.gov/osw/streamstats/. The Oklahoma StreamStats application covers 69 processed hydrologic units and most of the state of Oklahoma. Basin characteristics available for computation include contributing drainage area, contributing drainage area that is unregulated by Natural Resources Conservation Service floodwater retarding structures, mean-annual precipitation at the drainage-basin outlet for the period 1961-1990, 10-85 channel slope (slope between points located at 10 percent and 85 percent of the longest flow-path length upstream from the outlet), and percent impervious area. The Oklahoma StreamStats application interacts with the National Streamflow Statistics database, which contains the peak-flow regression equations in a previously published report. Fourteen peak-flow (flood) frequency statistics are available for computation in the Oklahoma StreamStats application. These statistics include the peak flow at 2-, 5-, 10-, 25-, 50-, 100-, and 500-year recurrence intervals for rural, unregulated streams; and the peak flow at 2-, 5-, 10-, 25-, 50-, 100-, and 500-year recurrence intervals for rural streams that are regulated by Natural Resources Conservation Service floodwater retarding structures. Basin characteristics and streamflow statistics cannot be computed for locations in playa basins (mostly in the Oklahoma Panhandle) and along main stems of the largest river systems in the state, namely the Arkansas, Canadian, Cimarron, Neosho, Red, and Verdigris Rivers, because parts of the drainage areas extend outside of the processed hydrologic units.

Oklahoma↗

Analysis of the Shallow Groundwater Flow System at Fire Island National Seashore, Suffolk County, New York

Fire Island National Seashore (FIIS) occupies 42 kilometers of the barrier island for which it is named that lies off the southern shore of Suffolk County, N.Y. Freshwater in the highly permeable, sandy aquifer underlying Fire Island is bounded laterally by marine surface waters and at depth by saline groundwater. Interspersed throughout FIIS are 17 pre-existing residential communities that in summer months greatly increase in population through the arrival of summer residents and vacationers; in addition, the National Park Service (NPS) has established several facilities on the island to accommodate visitors to FIIS. The 2.2 million people estimated by the NPS to visit Fire Island annually impact groundwater quality through the release of waste-derived contaminants, such as nutrients, pathogens, and organic compounds, into the environment. Waste-contaminated groundwater can move through the aquifer and threaten the ecological health of the adjacent back-barrier estuaries to which much of the groundwater ultimately discharges. In 2004, the U.S. Geological Survey (USGS), in cooperation with the NPS, began a 3-year investigation to (1) collect groundwater levels and water-quality (nutrient) samples, (2) develop a three-dimensional model of the shallow (water-table) aquifer system and adjacent marine surface waters, and (3) calculate nitrogen loads in simulated groundwater discharges from the aquifer to back-barrier estuaries and the ocean. The hydrogeology of the shallow aquifer system was characterized from the results of exploratory drilling, geophysical surveying, water-level monitoring, and water-quality sampling. The investigation focused on four areas-the communities of Kismet and Robbins Rest, the NPS Visitor Center at Watch Hill, and the undeveloped Otis Pike Fire Island High Dune Wilderness. Thirty-five observation wells were installed within FIIS to characterize subsurface hydrogeology and establish a water-table monitoring network in the four study areas. A variable-density model of the shallow aquifer system and adjacent marine surface waters was developed to simulate groundwater flow patterns and rates. Nitrogen loads from the shallow aquifer system were calculated from representative total nitrogen (TN) concentrations and simulated groundwater discharges to back-barrier estuaries and the ocean. The model simulates groundwater directions, velocities, and discharge rates under 2005 mean annual conditions. Groundwater budgets were developed for recharge areas of similar land use that contribute freshwater to back-barrier estuaries, the ocean, and subsea-discharge zones. Total freshwater discharge from the shallow aquifer system is about 43,500 cubic meters per day (m3/d) (79.8 percent) to back-barrier estuaries and about 10,200 m3/d (18.7 percent) to the ocean; about 836 m3/d (1.5 percent) may exit the system as subsea underflow. The total contribution of fresh groundwater to shoreline discharge zones amounts to about 53,700 m3/d (98.5 percent). The median age of freshwater discharged to back-barrier estuaries and the ocean was 3.4 years, and the 95th-percentile age was 20 years. The TN concentrations and loads under 2005 mean annual conditions for areas that contribute fresh groundwater to back-barrier estuaries and the ocean were calculated for the principal land uses on Fire Island. The overall TN load from the shallow aquifer system to shoreline discharge zones is about 16,200 kilograms per year (kg/yr) (82.2 percent) to back-barrier estuaries and about 3,500 kg/yr (17.8 percent) to the ocean. The overall TN load to marine surface waters amounts to about 19,700 kg/yr-roughly 6 percent of the annual TN load from shallow groundwater entering the South Shore Estuary Reserve (SSER) from the Suffolk County mainland, which is about 345,000 kg/yr. In contrast to the TN load from shallow groundwater for the SSER watershed, which annually yields about 353 kilograms per square kilometer (kg/km2), the overall TN loa

Scientific Investigations Report↗

Bedload-surrogate monitoring technologies

Advances in technologies for quantifying bedload fluxes and in some cases bedload size distributions in rivers show promise toward supplanting traditional physical samplers and sampling methods predicated on the collection and analysis of physical bedload samples. Four workshops held from 2002 to 2007 directly or peripherally addressed bedload-surrogate technologies, and results from these workshops have been compiled to evaluate the state-of-the-art in bedload monitoring. Papers from the 2007 workshop are published for the first time with this report. Selected research and publications since the 2007 workshop also are presented. Traditional samplers used for some or all of the last eight decades include box or basket samplers, pan or tray samplers, pressure-difference samplers, and trough or pit samplers. Although still useful, the future niche of these devices may be as a means for calibrating bedload-surrogate technologies operating with active- and passive-type sensors, in many cases continuously and automatically at a river site. Active sensors include acoustic Doppler current profilers (ADCPs), sonar, radar, and smart sensors. Passive sensors include geophones (pipes or plates) in direct contact with the streambed, hydrophones deployed in the water column, impact columns, and magnetic detection. The ADCP for sand and geophones for gravel are currently the most developed techniques, several of which have been calibrated under both laboratory and field conditions. Although none of the bedload-surrogate technologies described herein are broadly accepted for use in large-scale monitoring programs, several are under evaluation. The benefits of verifying and operationally deploying selected bedload-surrogate monitoring technologies could be considerable, providing for more frequent and consistent, less expensive, and arguably more accurate bedload data obtained with reduced personal risk for use in managing the world's sedimentary resources. Twenty-six papers are published for the first time as part of the 2007 International Bedload-Surrogate Monitoring Workshop (listed in table 2 in alphabetical order by name of first author). Sequential page numbering of the papers begins on page 38, after the last page of the report. The report plus the 26 papers comprise 430 pages.

Scientific Investigations Report↗

Incorporation of water-use summaries into the StreamStats web application for Maryland

Approximately 25,000 new households and thousands of new jobs will be established in an area that extends from southwest to northeast of Baltimore, Maryland, as a result of the Federal Base Realignment and Closure (BRAC) process, with consequent new demands on the water resources of the area. The U.S. Geological Survey, in cooperation with the Maryland Department of the Environment, has extended the area of implementation and added functionality to an existing map-based Web application named StreamStats to provide an improved tool for planning and managing the water resources in the BRAC-affected areas. StreamStats previously was implemented for only a small area surrounding Baltimore, Maryland, and it was extended to cover all BRAC-affected areas. StreamStats could provide previously published streamflow statistics, such as the 1-percent probability flood and the 7-day, 10-year low flow, for U.S. Geological Survey data-collection stations and estimates of streamflow statistics for any user-selected point on a stream within the implemented area. The application was modified for this study to also provide summaries of water withdrawals and discharges upstream from any user-selected point on a stream. This new functionality was made possible by creating a Web service that accepts a drainage-basin delineation from StreamStats, overlays it on a spatial layer of water withdrawal and discharge points, extracts the water-use data for the identified points, and sends it back to StreamStats, where it is summarized for the user. The underlying water-use data were extracted from the U.S. Geological Survey's Site-Specific Water-Use Database System (SWUDS) and placed into a Microsoft Access database that was created for this study for easy linkage to the Web service and StreamStats. This linkage of StreamStats with water-use information from SWUDS should enable Maryland regulators and planners to make more informed decisions on the use of water resources in the BRAC area, and the technology should be transferrable to other geographic areas.

Scientific Investigations Report↗

Hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River, Nebraska— With special emphasis on the Niobrara National Scenic River

The Niobrara River is an ecologically and economically important resource in Nebraska. The Nebraska Department of Natural Resources’ recent designation of the hydraulically connected surface- and groundwater resources of the Niobrara River Basin as “fully appropriated” has emphasized the importance of understanding linkages between the physical and ecological dynamics of the Niobrara River so it can be sustainably managed. In cooperation with the Nebraska Game and Parks Commission, the U.S. Geological Survey investigated the hydrogeomorphic and hydraulic attributes of the Niobrara River in northern Nebraska. This report presents the results of an analysis of hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River and its valley for the approximately 330-mile reach from Dunlap Diversion Dam to its confluence with the Missouri River. Two spatial scales were used to examine and quantify the hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River: a basin scale and a reach scale. At the basin scale, digital spatial data and hydrologic data were analyzed to (1) test for differences between 36 previously determined longitudinal hydrogeomorphic segments; (2) quantitatively describe the hydrogeomorphic characteristics of the river and its valley; and (3) evaluate differences in hydraulic microhabitat over a range of flow regimes among three fluvial geomorphic provinces. The statistical analysis of hydrogeomorphic segments resulted in reclassification rates of 3 to 28 percent of the segments for the four descriptive geomorphic elements. The reassignment of classes by discriminant analysis resulted in a reduction from 36 to 25 total hydrogeomorphic segments because several adjoining segments shared the same ultimate class assignments. Virtually all of the segment mergers were in the Canyons and Restricted Bottoms (CRB) fluvial geomorphic province. The most frequent classes among hydrogeomorphic segments, and the dominant classes per unit length of river, are: a width-restricted valley confinement condition, sinuous-planview pattern, irregular channel width, and an alternate bar configuration. The Niobrara River in the study area flows through a diversity of fluvial geomorphic settings in its traverse across northern Nebraska. In the Meandering Bottoms (MB) fluvial geomorphic province, river discharge magnitudes are low, and the valley exerts little control on the channel-planview pattern. Within the CRB province, the river flows over a diversity of geologic formations, and the valley and river narrow and expand in approximate synchronicity. In the Braided Bottoms (BB) fluvial geomorphic province, the river primarily flows over Cretaceous Pierre Shale, the valley and channel are persistently wide, and the channel slope is generally uniform. The existence of vegetated islands and consequent multithread channel environments, indicated by a higher braided index, mostly coincided with reaches having gentler slopes and less unit stream power. Longitudinal hydrology curves indicate that the flow of the Niobrara River likely is dominated by groundwater as far downstream as Norden. Unit stream power values in the study area vary between 0 and almost 2 pounds per foot per second. Within the MB province, unit stream power steadily increases as the Niobrara gains discharge from groundwater inflow, and the channel slope steepens. The combination of steep slopes, a constrained channel width, and persistent flow within the CRB province results in unit stream power values that are between three and five times greater than those in less confined segments with comparable or greater discharges. With the exception of hydrogeomorphic segment 3, which is affected by Spencer Dam, unit stream power values in the BB province are generally uniform. Channel sinuosity values in the study area varied generally between 1 and 2.5, but with locally higher values measured in the MB province and at the entrenched bedrock meanders of hydrogeomorphic segment 18 in the CRB province. The differences in channel morphology and hydraulic geometries between fluvial geomorphic provinces are evident in the types, relative abundance, and response of hydraulic microhabitats to changing discharges. The four gaging stations chosen for hydraulic microhabitat analysis are distributed among three different fluvial geomorphic provinces. In the MB province, the smaller channel and lower discharges resulted in the dominance of shallow and intermediate-depth hydraulic environments with the vast majority of hydraulic microhabitat restricted to shallow categories even during upper-decile discharges. In the CRB province, intermediate depth hydraulic conditions, particularly intermediate-swift, dominate over all ranges of discharge. Hydraulic microhabitat conditions were most diverse in the BB province, with most hydraulic microhabitat categories present over the entire range of discharges analyzed. The calculated differences in hydraulic microhabitat distributions, abundance, and adjustments between streamflow-gaging stations were the result of differences in physical structure of the channel and subsequent channel hydraulic geometry. At the reach scale, field measurements made in water years 2008 and 2009 in four study reaches within the Scenic Reach were used to (1) characterize the elevation and geomorphic processes associated with fluvial landforms, (2) build hydraulic geometry relations, (3) examine flow hydraulics over a range of discharges, and (4) examine the types and responses of hydraulic microhabitats to a range of flow magnitudes. Four landform groups were identified and named in order of increasing elevation: low flood plains, intermediate flood plains, low terraces, and high terraces. The terraces were poorly characterized because the surveys did not extend across the full width of the alluvial valley bottom. The two lowest fluvial landforms are likely active in the modern hydroclimatic regime. Sediment samples obtained in the study reaches indicate that the primary bed material in the active channel ranged in size from coarse silt to coarse sand. Grain-size distributions from samples also indicate that the bed of the Niobrara River among the study reaches coarsens and has increasing grainsize variability in the downstream direction. Values of at-a-station hydraulic geometry exponents indicate that the Niobrara River in the study reaches adjusts its geometry to changing discharges primarily through increases in flow depth and velocity. Relations at one cross section indicated that, at least locally, changes in width were also an important channel adjustment mechanism. Hydraulic behavior over the range of flows measured was not consistent among all study reaches, but two general modes of hydraulic behavior were observed in the reaches with substantial coverage of the bed by fine sediment. At the Sunny Brook and Muleshoe study reaches, average boundary-shear stress remained approximately constant, and hydraulic resistance decreased, for discharges below 900 cubic feet per second (ft 3 /s). Above 900 ft 3 /s, average boundary shear stress and hydraulic resistance both increased. The Rock Barn study reach did not exhibit the same two-mode hydraulic behavior observed at the Sunny Brook and Muleshoe reaches. The coincident increase in boundary shear stress above 900 ft 3 /s observed at the Sunny Brook and Muleshoe study reaches represents a potential hydraulic threshold above which bedload transport rates were likely to increase markedly. No consistent bed-adjustment pattern (scour or fill) was identified in the study reaches over the range of flows or over the measurement season. Analysis of hydraulic microhabitats over the range of discharges measured at the study reaches indicates that some percentage of most habitat niche categories was available for at least one discharge condition, but the majority of hydraulic habitat available was within the intermediate-swift and deepswift habitat niche categories. Deep-swift conditions dominated nearly all study reaches under all measured discharge conditions. Slight differences in habitat distributions were observed between the study reaches with substantial coverage of the bed by fine sediment—Sunny Brook, Muleshoe, and Rock Barn—and the bedrock-dominated reach, Crooked Creek. Although the four study reaches occupy three different hydrogeomorphic segments, the types, relative abundance, and response of hydraulic microhabitat niche distributions to changing discharge conditions generally were similar among all reaches.

Nebraska↗

Digital signal processing and interpretation of full waveform sonic log for well BP-3-USGS, Great Sand Dunes National Park and Preserve, Alamosa County, Colorado

Along the Great Sand Dunes National Park and Preserve boundary (fig. 1), 10 monitoring wells were drilled by the National Park Service in order to monitor water flow in an unconfined aquifer spanning the park boundary. Adjacent to the National Park Service monitoring well named Boundary Piezometer Well No. 3, or BP-3, the U.S. Geological Survey (USGS) drilled the BP-3-USGS well. This well was drilled from September 14 through 17, 2009, to a total depth of 99.4 meters (m) in order to acquire additional subsurface information. The BP-3-USGS well is located at lat 37 degrees 43'18.06' and long -105 degrees 43'39.30' at a surface elevation of 2,301 m. Approximately 23 m of core was recovered beginning at a depth of 18 m. Drill cuttings were also recovered. The wireline geophysical logs acquired in the well include natural gamma ray, borehole caliper, temperature, full waveform sonic, density, neutron, resistivity, and induction logs. The BP-3-USGS well is now plugged and abandoned. This report details the full waveform digital signal processing methodology and the formation compressional-wave velocities determined for the BP-3-USGS well. These velocity results are compared to several velocities that are commonly encountered in the subsurface. The density log is also discussed in context of these formation velocities.

Scientific Investigations Report↗

Proceedings of the U.S. Geological Survey Eighth Biennial Geographic Information Science Workshop and first The National Map Users Conference, Denver, Colorado, May 10-13, 2011

The U.S. Geological Survey (USGS) is sponsoring the first The National Map Users Conference in conjunction with the eighth biennial Geographic Information Science (GIS) Workshop on May 10-13, 2011, in Lakewood, Colorado. The GIS Workshop will be held at the USGS National Training Center, located on the Denver Federal Center, Lakewood, Colorado, May 10-11. The National Map Users Conference will be held directly after the GIS Workshop at the Denver Marriott West, a convention hotel in the Lakewood, Colorado area, May 12-13. The National Map is designed to serve the Nation by providing geographic data and knowledge for government, industry, and public uses. The goal of The National Map Users Conference is to enhance communications and collaboration among the communities of users of and contributors to The National Map, including USGS, Department of the Interior, and other government GIS specialists and scientists, as well as the broader geospatial community. The USGS National Geospatial Program intends the conference to serve as a forum to engage users and more fully discover and meet their needs for the products and services of The National Map. The goal of the GIS Workshop is to promote advancement of GIS and related technologies and concepts as well as the sharing of GIS knowledge within the USGS GIS community. This collaborative opportunity for multi-disciplinary GIS and associated professionals will allow attendees to present and discuss a wide variety of geospatial-related topics. The Users Conference and Workshop collaboration will bring together scientists, managers, and data users who, through presentations, posters, seminars, workshops, and informal gatherings, will share accomplishments and progress on a variety of geospatial topics. During this joint event, attendees will have the opportunity to present or demonstrate their work; to develop their knowledge by attending hands-on workshops, seminars, and presentations given by professionals from USGS and other Federal Agencies, GIS related companies, and academia; and to network with other professionals to develop collaborative opportunities. Specific conference topics include scientific and modeling applications using The National Map, opportunities for partnerships, and advances in geospatial technologies. The first part of the week will be the GIS Workshop, offered as a pre-conference seminar. It will focus on hands-on GIS training and seminars concerning current topics of geospatial interest. The focus of the USGS GIS Workshop is to showcase specific techniques and concepts for using GIS in support of science. The presentations will be educational and not a marketing endeavor. To promote awareness of and interaction with selected USGS corporate and local science center data products, as well as promoting collaboration, a “GIS Olympics” event will be held Tuesday evening during the GIS Workshop. The second part of the week will feature interactive briefings and discussions on issues and opportunities of The National Map. The focus of the Users Conference will be on the role of The National Map in supporting science initiatives, emergency response, land and wildlife management, and other activities. All presentations at the Users Conference include use or innovations related to a The National Map data theme or application. On Wednesday evening, a poster session is being held as a combined event for all attendees and as a juncture between the events. On Thursday evening, the Henry Gannett Award will be presented. Additionally, poster awards will be presented. Several prominent speakers are featured at plenary sessions at The National Map Users Conference, including Deanna A. Archuleta, Deputy Assistant Secretary for Water and Science, Department of the Interior; Dr. Barbara P. Buttenfield, Professor of Geography at the University of Colorado in Boulder; best-selling author Frederick Reuss; and Dr. Joel Scheraga, Senior Advisor for Climate Adaptation, U.S. Environmental Protection Agency. Additionally, panel discussions have attracted participation from notable experts from government, academia, and the private sector. This Proceedings volume will serve as an activity reference for workshop attendees, as well as an archive of technical abstracts presented at the workshop. Author, co-author, and presenter names, affiliations, and contact information are listed with presentation titles with the abstracts. Some hands-on sessions are offered twice; in these instances, abstracts submitted for publication are presented in the proceedings on both days on which they are offered.

Scientific Investigations Report↗

The systematic geologic mapping program and a quadrangle-by-quadrangle analysis of time-stratigraphic relations within oil shale-bearing rocks of the Piceance Basin, western Colorado

During the 1960s, 1970s, and 1980s, the U.S. Geological Survey mapped the entire area underlain by oil shale of the Eocene Green River Formation in the Piceance Basin of western Colorado. The Piceance Basin contains the largest known oil shale deposit in the world, with an estimated 1.53 trillion barrels of oil in place and as much as 400,000 barrels of oil per acre. This report places the sixty-nine 7½-minute geologic quadrangle maps and one 15-minute quadrangle map published during this period into a comprehensive time-stratigraphic framework based on the alternating rich and lean oil shale zones. The quadrangles are placed in their respective regional positions on one large stratigraphic chart so that tracking the various stratigraphic unit names that have been applied can be followed between adjacent quadrangles. Members of the Green River Formation were defined prior to the detailed mapping, and many inconsistencies and correlation problems had to be addressed as mapping progressed. As a result, some of the geologic units that were defined prior to mapping were modified or discarded. The extensive body of geologic data provided by the detailed quadrangle maps contributes to a better understanding of the distribution and characteristics of the oil shale-bearing rocks across the Piceance Basin.

Colorado↗

Water-level altitudes and continuous and discrete water quality at and near an aquifer storage and recovery site, Bexar, Atascosa, and Wilson Counties, Texas, June 2004-September 2011

The U.S. Geological Survey (USGS), in cooperation with the San Antonio Water System (SAWS), collected data during 2004–11 to characterize the quality of native groundwater from the San Antonio segment of the Edwards aquifer (hereinafter, Edwards aquifer) and preinjection and postinjection water from the Carrizo aquifer (informal name commonly applied to the upper part of the Carrizo-Wilcox aquifer in the area) at and near an aquifer storage and recovery (ASR) site in Bexar, Atascosa, and Wilson Counties, Texas. Daily mean water-level altitude, water temperature, and specific conductance were measured continuously in a monitoring well on the ASR site to determine how injection and withdrawal at the ASR site might affect local groundwater. Groundwater samples were collected and analyzed for selected physical properties and constituents to characterize the quality of native groundwater from the Edwards aquifer and preinjection and postinjection water from the Carrizo aquifer near the ASR site to provide a better understanding of possible changes in the quality of groundwater near an active ASR site that might result from the mixing of water from different aquifers. During injection periods, the water-level altitude in the monitoring well generally increased as the amount of water being injected into all wells at the ASR site increased and decreased as the amount of water being injected into all wells at the ASR site decreased. During withdrawal periods, the water-level altitude in the monitoring well generally increased as the total volume of water being withdrawn from all wells at the ASR site decreased and generally decreased as the total volume of water being withdrawn from all wells increased. Daily mean water temperature fluctuated by less than 1 degree Celsius and was determined to be independent of injection or withdrawal conditions at the ASR site. Changes in daily mean specific-conductance values measured at four depths in the monitoring well at the ASR site occurred without regard to total ASR site injection or withdrawal volumes. No substantial differences were measured over time in major-ion, trace-element, or isotope chemistry of water samples collected from the wells that supplied water from the Edwards aquifer. Little variation in water chemistry was detected in the samples collected from four wells designed to inject and withdraw water at the ASR site, regardless of whether the ASR site was injecting or withdrawing water. The similarity of major-ion and isotope chemistry between the Edwards aquifer source wells and the four ASR wells indicates that little, if any, migration of injected water away from the ASR wells has occurred. In a well located closest to the ASR site in the direction of regional flow for the Carrizo aquifer, a greater alkalinity value and a smaller concentration of chloride were measured in the most recent sample than in all other samples collected at this well. Substantial increases in dissolved iron and manganese concentrations also were observed in this well. The increased alkalinity value and dissolved iron and manganese concentrations and the decreased chloride concentration in the well could indicate that the injected water from the Edwards aquifer had begun to move into at least a part of the strata supplying these wells and might be causing iron and manganese mobilization in the Carrizo aquifer.

Texas↗

Simulated effects of Lower Floridan aquifer pumping on the Upper Floridan aquifer at Pooler, Chatham County, Georgia

A revised regional groundwater-flow model was used to assess the potential effects on the Upper Floridan aquifer (UFA) of pumping the Lower Floridan aquifer (LFA) from a new well (35Q069) located at the City of Pooler in coastal Georgia near Savannah. The spatial resolution of the original regional, steady-state, groundwater-flow model was increased to incorporate detailed hydrogeologic information resulting from field investigations at Pooler and existing wells in the area. Simulation results using the U.S. Geological Survey finite-difference code MODFLOW indicated that long-term pumping at a rate of 780 gallons per minute (gal/min) from the LFA well 35Q069 would cause a maximum drawdown of about 2.52 feet (ft) in the UFA (scenario A). This maximum drawdown in the UFA was greater than the observed draw-down of 0.9 ft in the 72-hour aquifer test, but this is expected because the steady-state simulated drawdown represents long-term pumping conditions. Model results for scenario A indicate that drawdown in the UFA exceeded 1 ft over a 163-square-mile (mi 2 ) area. Induced vertical leakage from the UFA provided about 98 percent of the water to the LFA; the area within 1 mile of the pumped well contributed about 81 percent of the water pumped. Simulated pumping changed regional water-budget components slightly and redistributed flow among model layers, namely increasing downward leakage in all layers, decreasing upward leakage in all layers above the LFA, increasing inflow to and decreasing outflow from lateral specified-head boundaries in the UA and LFA, and increasing the volume of induced recharge from the general head boundary to outcrop units. An additional two groundwater-pumping scenarios were run to establish that a linear relation exists between pumping rates of the LFA well 35Q069 (varied from 390 to 1,042 gal/min) and amount of drawdown in the UFA and LFA. Three groundwater-pumping scenarios were run to evaluate the amount of UFA pumping (128 to 340 gal/min) that would produce maximum drawdown in the UFA equivalent to that induced by pumping the LFA well 35Q069 at rates specified in scenarios A, B, and C (390 to 1,042 gal/min). Scenarios in which the LFA well 35Q069 was pumped produced a larger drawdown area in the UFA than scenarios in which the UFA well was pumped to offset the maximum UFA drawdown simulated by scenarios A, B, and C. Three additional groundwater-pumping scenarios were run to evaluate the combination of pumping reductions at existing Pooler UFA public-supply wells with the addition of pumping from the new LFA well. For each scenario, LFA well 35Q069 was pumped at different rates, and pumping at existing Pooler supply wells, located about 3.7 miles northward, was reduced according to UFA drawdown offsets (128 to 340 gal/min) established by scenarios D, E, and F. Decreases in the magnitude and areal extent of drawdown in the UFA in response to pumping the LFA well were realized for scenarios that simulated drawdown offsets (reductions) for the existing UFA wells at Pooler when compared with the magnitude and extent of drawdown resulting from scenarios that did not simulate drawdown offsets for the existing UFA wells at Pooler (scenarios A, B, and C). The revised model was evaluated for sensitivity by altering horizontal and vertical hydraulic conductivity in layers 5 through 7 (Floridan aquifer system) for newly established hydraulic-property zones by factors of 0.1, 0.5, 2.0, and 10.0. Results of the sensitivity analysis indicate that horizontal and vertical hydraulic conductivity of the UFA and LFA are the most important parameters in model simulations. The least sensitive parameters were the horizontal and vertical hydraulic conductivity of the Lower Floridan confining unit; changes to these parameters had little effect on simulated leakage and groundwater levels. The revised model reasonably depicts changes in groundwater levels resulting from pumping the LFA at Pooler at a rate of 780 gal/min. However, results are limited by the same model assumptions and design as the original model and placement of boundaries and type of boundary used exert the greatest control on overall groundwater flow and interaquifer leakage in the system. Simulation results have improved regional characterization of the Floridan aquifer system, which could be used by State officials in evaluating requests for groundwater withdrawal from the LFA.

Georgia↗