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At least 1,621 records · Page 90Linked to original sources

USGS2016

Montane Forests

This long-anticipated reference and sourcebook for California’s remarkable ecological abundance provides an integrated assessment of each major ecosystem type—its distribution, structure, function, and management. A comprehensive synthesis of our knowledge about this biologically diverse state, Ecosystems of California covers the state from oceans to mountaintops using multiple lenses: past and present, flora and fauna, aquatic and terrestrial, natural and managed. Each chapter evaluates natural processes for a specific ecosystem, describes drivers of change, and discusses how that ecosystem may be altered in the future. This book also explores the drivers of California’s ecological patterns and the history of the state’s various ecosystems, outlining how the challenges of climate change and invasive species and opportunities for regulation and stewardship could potentially affect the state’s ecosystems. The text explicitly incorporates both human impacts and conservation and restoration efforts and shows how ecosystems support human well-being. Edited by two esteemed ecosystem ecologists and with overviews by leading experts on each ecosystem, this definitive work will be indispensable for natural resource management and conservation professionals as well as for undergraduate or graduate students of California’s environment and curious naturalists.

Book chapter↗

USGS2016

Managed island ecosystems

Book chapter↗

USGS2019

Energy intake rate influences survival of Black Oystercatcher Haematopus bachmani broods

Black Oystercatchers Haematopus bachmani, a species of conservation concern, depend on marine intertidal prey resources. We examined diet, feeding rates, growth, and survival of Black Oystercatcher broods in southcentral Alaska, 2013-2014. To determine the importance of diet on brood survival, we modeled daily survival rates of broods as a function of energy intake rate and other ecological factors. We hypothesized that broods fed at higher energy intake rates would grow faster and fly earlier, thereby being less vulnerable to predators and having higher rates of survival. Consistent with our prediction, broods with higher energy intake rates had higher rates of growth and daily survival. The best-supported model indicated that brood survival varied by energy intake rate and brood age. To understand how adults meet the increasing nutritional needs of developing chicks, we examined delivery rates and prey type and size as a function of brood age. Delivery rates differed by age, but composition and size classes of prey items did not, indicating that adults respond to the rising energetic needs of broods by increasing parental effort rather than switching prey. These findings demonstrate the importance of diet and provisioning to broods and given the consequences of reduced energy intake on survival, indicate that shifts in intertidal invertebrates as a result of climate change could have significant impacts on Black Oystercatcher populations.

Alaska↗

USGS2021

Connectivity between lentic and lotic freshwater habitats identified as a conservation priority for coho salmon

Juvenile Pacific salmon exhibit diverse habitat use and migration strategies to navigate high environmental variability and predation risk during freshwater residency. Increasingly, urbanization and climate-driven hydrological alterations are affecting the availability and quality of aquatic habitats in salmon catchments. Thus, conservation of freshwater habitat integrity has emerged as an important challenge in supporting salmon life-history diversity as a buffer against continuing ecosystem changes. To inform catchment management for salmon, information on the distribution and movement dynamics of juvenile fish throughout the annual seasonal cycle is needed. A number of studies have assessed the ecology of juvenile coho salmon ( Oncorhynchus kisutch ) during summer and autumn seasons; catchment use by this species throughout the annual cycle is less well characterized, particularly in high-latitude systems. Here, n = 3,792 tagged juvenile coho salmon were tracked throughout two complete annual cycles to assess basin-wide distribution and movement behaviour of this species in a subarctic, ice-bearing catchment. Juvenile coho salmon in the Big Lake basin, Alaska, exhibited multiple habitat use and movement strategies across seasons; however, summer rearing in lotic mainstem environments followed by migration to lentic overwinter habitats was identified as a prominent behaviour, with two-thirds of tracked fish migrating en masse to concentrate in a small subset of upper catchment lakes for the winter. In contrast, the most significant tributary overwintering site (8% of tracked fish) occurred below a culvert and dam, blocking juvenile fish passage to a headwater lake, indicating that these fish may have been restricted from reaching preferred lentic overwinter habitats. These findings emphasize the importance of maintaining aquatic connectivity to lentic habitats as a conservation priority for coho salmon during freshwater residency.

Aquatic Conservation: Marine and Freshwater Ecosys↗

USGS2002

Interactions between surface water and ground water and effects on mercury transport in the north-central Everglades

The hydrology of the north-central Everglades was altered substantially in the past century by canal dredging, land subsidence, ground-water pumping, and levee construction. Vast areas of seasonal and perennial wetlands were converted to uses for agriculture, light industry, and suburban development. As the catchment area for the Everglades decreased, so did the sources of water from local precipitation and runoff from surrounding uplands. Partly in response to those alterations, water-resources managers compartmentalized the remaining wetlands in the north-central Everglades into large retention basins, called Water Conservation Areas (WCAs). In spite of efforts to improve how water resources are managed, the result has been frequent periods of excessive drying out or flooding of the WCAs because the managed system does not have the same water-storage capacity as the pre-drainage Everglades. Linked to the hydrological modifications are ecological changes including large-scale invasions of cattail, loss of tree islands, and diminishing bird populations in the Everglades. Complex interactions among numerous physical, chemical, and biological factors are responsible for the long-term degradation of the ecological character of the Everglades.Over the past 15 years, a new set of smaller wetland basins, called Stormwater Treatment Areas (STAs), have been designed and constructed by water-resources engineers on the former wetlands adjacent to WCAs. The purpose of STAs is to remove excess nutrients from agricultural drainage water prior to its input to WCAs. STAs tend to be about one-tenth the size of a WCA, and they are located on former wetlands on the northwestern side of WCAs on sites that were managed as farmland for much of the twentieth century in an area referred to as the Everglades Agricultural Area, or EAA. The objective of the present investigation was to quantify interactions between surface water and ground water in the Everglades Nutrient Removal Project (ENR), a prototype project for the STAs that began operation in 1994. Determining the effect of ground water on the mercury balance of the ENR treatment wetland was an important additional objective. In order to broaden the relevance of conclusions to all parts of the north-central Everglades, interactions between surface water and ground water and mercury also were investigated in Water Conservation Area 2A (WCA-2A) and, to a lesser extent, in two other WCA basins, WCA-2B and WCA-3A.An important conclusion of this study is that creation of the WCA basins, and accompanying water-resources management, have appreciably increased both recharge and discharge in the north-central Everglades compared with pre-drainage conditions. Recharge and discharge are highest near the northern and northwestern edges of the Everglades, in the relatively small basins such as ENR and the STAs that share borders with both WCA-1 and the EAA. All basins experienced greater increases in recharge relative to discharge, because of the effects that land subsidence and ground-water pumping outside the Everglades had on hydraulic gradients. The highest basin-wide estimate of recharge was measured in ENR, where recharge averaged 0.9 centimeter per day (cm/d) over a 4-year study period. For perspective, that estimate of recharge is the equivalent of 30 percent of pumped surface-water inflows and 230 percent of average daily precipitation in ENR. Ground-water discharge was 10 times smaller than recharge at ENR. The present study estimated a basin-averaged recharge for WCA-2A (0.2 cm/d) that was a factor of 4 smaller than ENR. Although preliminary, that estimate of recharge is 5 times higher than previous estimates (approximately 0.04 cm/d), probably because the newer measurements were able to quantify recharge and discharge at finer spatial and temporal scales. Recharge at WCA-2A is smaller than ENR because WCA-2A has a smaller topographic gradient (3 x 10-5 and 2 x 10-4 in WCA-2A and ENR, respective

Florida↗

USGS2008

Assessing streamflow characteristics as limiting factors on benthic invertebrate assemblages in streams across the western United States

1. Human use of land and water resources modifies many streamflow characteristics, which can have significant ecological consequences. Streamflow and invertebrate data collected at 111 sites in the western U.S.A. were analysed to identify streamflow characteristics (magnitude, frequency, duration, timing and variation) that are probably to limit characteristics of benthic invertebrate assemblages (abundance, richness, diversity and evenness, functional feeding groups and individual taxa) and, thus, would be important for freshwater conservation and restoration. Our analysis investigated multiple metrics for each biological and hydrological characteristic, but focuses on 14 invertebrate metrics and 13 streamflow metrics representing the key associations between streamflow and invertebrates. 2. Streamflow is only one of many environmental and biotic factors that influence the characteristics of invertebrate assemblages. Although the central tendency of invertebrate assemblage characteristics may not respond to any one factor across a large region like the western U.S.A., we postulate that streamflow may limit some invertebrates. To assess streamflow characteristics as limiting factors on invertebrate assemblages, we developed a nonparametric screening procedure to identify upper (ceilings) or lower (floors) limits on invertebrate metrics associated with streamflow metrics. Ceilings and floors for selected metrics were then quantified using quantile regression. 3. Invertebrate assemblages had limits associated with all streamflow characteristics that we analysed. Metrics of streamflow variation at daily to inter-annual scales were among the most common characteristics associated with limits on invertebrate assemblages. Baseflow recession, daily variation and monthly variation, in streamflow were associated with the largest number of invertebrate metrics. Since changes in streamflow variation are often a consequence of hydrologic alteration, they may serve as useful indicators of ecologically significant changes in streamflow and as benchmarks for managing streamflow for ecological objectives. 4. Relative abundance of Plecoptera, richness of non-insect taxa and relative abundance of intolerant taxa were associated with multiple streamflow metrics. Metrics of sensitive taxa (Ephemeroptera, Plecoptera and Trichoptera), and intolerant taxa generally had ceilings associated with flow metrics while metrics of tolerant taxa, non-insects, dominance and chironomids generally had floors. Broader characteristics of invertebrate assemblages such as abundance and richness had fewer limits, but these limits were nonetheless associated with a broad range of streamflow characteristics.

Freshwater Biology↗

USGS2025

Three decades of World Recreational Fishing Conferences: What have we learned about the dynamics of recreational fisheries?

Recreational fishing extends beyond catching fish, connecting individuals with nature, generating environmental stewards and contributing significantly to both local, regional and national economies. Assessing potential impacts on ecosystems and social-ecological systems requires dedicated multi- and interdisciplinary research and integrative management and policy approaches. Managing recreational fisheries effectively also necessitates transdisciplinary thinking, yet this poses continued challenges, as researchers and managers balance specialized expertise with innovative, boundary-crossing perspectives in light of limited funding in a rapidly changing social-ecological environment. The World Recreational Fishing Conference (WRFC) serves as the leading global scientific forum for addressing these challenges, fostering interdisciplinary exchange among scientists, managers, policy makers and stakeholders. The papers in this special issue represent the output of the last WRFC in Melbourne, Australia in 2023. By reviewing the content of the papers published in the present special issue, we illustrate the critical role of collaborative spaces, such as the WRFC, in bridging different expertise and approaches and fostering innovation, thereby securing adaptive management and conservation of recreational fisheries in response to global changes. Evaluating the development of the WRFC over three decades highlights how this conference series represents a leading think tank serving the entire network of recreational fisheries professionals globally.

Fisheries Management and Ecology↗

USGS2022

Defining biologically relevant and hierarchically nested population units to inform wildlife management

Wildlife populations are increasingly affected by natural and anthropogenic changes that negatively alter biotic and abiotic processes at multiple spatiotemporal scales and therefore require increased wildlife management and conservation efforts. However, wildlife management boundaries frequently lack biological context and mechanisms to assess demographic data across the multiple spatiotemporal scales influencing populations. To address these limitations, we developed a novel approach to define biologically relevant subpopulations of hierarchically nested population levels that could facilitate managing and conserving wildlife populations and habitats. Our approach relied on the Spatial “K”luster Analysis by Tree Edge Removal clustering algorithm, which we applied in an agglomerative manner (bottom-to-top). We modified the clustering algorithm using a workflow and population structure tiers from least-cost paths, which captured biological inferences of habitat conditions (functional connectivity), dispersal capabilities (potential connectivity), genetic information, and functional processes affecting movements. The approach uniquely included context of habitat resources (biotic and abiotic) summarized at multiple spatial scales surrounding locations with breeding site fidelity and constraint-based rules (number of sites grouped and population structure tiers). We applied our approach to greater sage-grouse ( Centrocercus urophasianus ), a species of conservation concern, across their range within the western United States. This case study produced 13 hierarchically nested population levels (akin to cluster levels, each representing a collection of subpopulations of an increasing number of breeding sites). These closely approximated population closure at finer ecological scales (smaller subpopulation extents with fewer breeding sites; cluster levels ≥2), where >92% of individual sage-grouse's time occurred within their home cluster. With available population monitoring data, our approaches can support the investigation of factors affecting population dynamics at multiple scales and assist managers with making informed, targeted, and cost-effective decisions within an adaptive management framework. Importantly, our approach provides the flexibility of including species-relevant context, thereby supporting other wildlife characterized by site fidelity.

Ecology and Evolution↗

USGS2017

Greater sage-grouse population trends across Wyoming

The scale at which analyses are performed can have an effect on model results and often one scale does not accurately describe the ecological phenomena of interest (e.g., population trends) for wide-ranging species: yet, most ecological studies are performed at a single, arbitrary scale. To best determine local and regional trends for greater sage-grouse ( Centrocercus urophasianus ) in Wyoming, USA, we modeled density-independent and -dependent population growth across multiple spatial scales relevant to management and conservation (Core Areas [habitat encompassing approximately 83% of the sage-grouse population on ∼24% of surface area in Wyoming], local Working Groups [7 regional areas for which groups of local experts are tasked with implementing Wyoming's statewide sage-grouse conservation plan at the local level], Core Area status (Core Area vs. Non-Core Area) by Working Groups, and Core Areas by Working Groups). Our goal was to determine the influence of fine-scale population trends (Core Areas) on larger-scale populations (Working Group Areas). We modeled the natural log of change in population size ( peak M lek counts) by time to calculate the finite rate of population growth ( λ ) for each population of interest from 1993 to 2015. We found that in general when Core Area status (Core Area vs. Non-Core Area) was investigated by Working Group Area, the 2 populations trended similarly and agreed with the overall trend of the Working Group Area. However, at the finer scale where Core Areas were analyzed separately, Core Areas within the same Working Group Area often trended differently and a few large Core Areas could influence the overall Working Group Area trend and mask trends occurring in smaller Core Areas. Relatively close fine-scale populations of sage-grouse can trend differently, indicating that large-scale trends may not accurately depict what is occurring across the landscape (e.g., local effects of gas and oil fields may be masked by increasing larger populations).

Wyoming↗

USGS2022

Population genetics reveals bidirectional fish movement across the Continental Divide via an interbasin water transfer

Interbasin water transfers are becoming an increasingly common tool to satisfy municipal and agricultural water demand, but their impacts on movement and gene flow of aquatic organisms are poorly understood. The Grand Ditch is an interbasin water transfer that diverts water from tributaries of the upper Colorado River on the west side of the Continental Divide to the upper Cache la Poudre River on the east side of the Continental Divide. We used single nucleotide polymorphisms to characterize population genetic structure in cutthroat trout ( Oncorhynchus clarkii ) and determine if fish utilize the Grand Ditch as a movement corridor. Samples were collected from two sites on the west side and three sites on the east side of the Continental Divide. We identified two or three genetic clusters, and relative migration rates and spatial distributions of admixed individuals indicated that the Grand Ditch facilitated bidirectional fish movement across the Continental Divide, a major biogeographic barrier. Previous studies have demonstrated ecological impacts of interbasin water transfers, but our study is one of the first to use genetics to understand how interbasin water transfers affect connectivity between previously isolated watersheds. We also discuss implications on native trout management and balancing water demand and biodiversity conservation.

Colorado↗

USGS2018

Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds

Lampreys have a worldwide distribution, are functionally important to ecological communities and serve significant roles in many cultures. In Pacific coast drainages of North America, lamprey populations have suffered large declines. However, lamprey population status and trends within many areas of this region are unknown and such information is needed for advancing conservation goals. We developed two quantitative PCR-based, aquatic environmental DNA (eDNA) assays for detection of Pacific Lamprey ( Entosphenus tridentatus ) and Lampetra spp, using locked nucleic acids (LNAs) in the probe design. We used these assays to characterize the spatial distribution of lamprey in 18 watersheds of Puget Sound, Washington, by collecting water samples in spring and fall. Pacific Lamprey and Lampetra spp were each detected in 14 watersheds and co-occurred in 10 watersheds. Lamprey eDNA detection rates were much higher in spring compared to fall. Specifically, the Pacific Lamprey eDNA detection rate was 3.5 times higher in spring and the Lampetra spp eDNA detection rate was 1.5 times higher in spring even though larval lamprey are present in streams year-round. This significant finding highlights the importance of seasonality on eDNA detection. Higher stream discharge in the fall likely contributed to reduced eDNA detection rates, although seasonal life history events may have also contributed. These eDNA assays differentiate Pacific Lamprey and Lampetra spp across much of their range along the west coast of North America. Sequence analysis indicates the Pacific Lamprey assay also targets other Entosphenus spp and indicates the Lampetra spp assay may have limited or no capability of detecting Lampetra in some locations south of the Columbia River Basin. Nevertheless, these assays will serve as a valuable tool for resource managers and have direct application to lamprey conservation efforts, such as mapping species distributions, occupancy modeling, and monitoring translocations and reintroductions.

Puget Sound↗

USGS2009

Threatened fishes of the world: Moapa coriacea Hubbs and Miller, 1948 (cyprinidae)

Moapa dace. Conservation status : Endangered (U.S. Department of the Interior 1967 ), Critically Endangered, IUCN (Gimenez 1996 ). Identification : Small embedded scales, narrow caudal peduncle and a bright black spot at the base of deeply forked tail. Pharyngeal teeth (0,5–4,0) hooked but with a grinding surface. Adults 50 to 120 mm total length. Drawing adapted from La Rivers ( 1962 ). Distribution : Endemic to the upper Muddy River system, Clark County, Nevada where the river originates from over 20 thermal springs. Prior to 1995 Moapa dace occupied 9.5 stream km including the upper Muddy River and spring-fed tributaries (U.S. Fish and Wildlife Service 1995 ). Distribution has contracted to 2 km (unpublished data) since the 1995 invasion of blue tilapia, Oreochromis aurea . Abundance : In 1994 the population was about 3,800, but after tilapia invasion dropped below 1,600 (Scoppettone et al. 1998 ) where it has remained (unpublished data). Habitat and ecology : Omnivorous but tends toward carnivory. Feed primarily on drift in areas adjacent to fast water 26–32°C. Reproduction : Occurs year round in spring-fed tributaries to the Muddy River in water temperature of 30–32°C (Scoppettone et al. 1992 ). Threats : Nonnative species (Scoppettone 1993 ; Scoppettone et al. 1998 ) and ground-water pumping (Mayer and Congdon 2008 ). Conservation actions : Moapa Valley National Wildlife Refuge was established in the upper Muddy River for the protection and perpetuation of Moapa dace. Barrier installation and chemical removal of blue tilapia downstream of refuge habitat provides 2 km of stream without tilapia. Conservation recommendations : Eliminate tilapia from the Muddy River system and control or eliminate other nonnative species. Protect spring discharge from excessive water withdrawal. Remarks : Given a high priority for recovery by the U.S. Government.

Environmental Biology of Fishes↗

USGS2023

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus ) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis , is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. As small ectotherms, Sceloporus lizards are particularly vulnerable to climate change, and S. occidentalis has also become an important system for studying the impacts of land use change and urbanization on small vertebrates. Here, we report a new reference genome assembly for S. occidentalis , as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomics strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 608 scaffolds spanning 2,856 Mb, has a contig N50 of 18.9 Mb, a scaffold N50 of 98.4 Mb, and BUSCO completeness score of 98.1% based on the tetrapod gene set. This reference genome will be valuable for understanding ecological and evolutionary dynamics in S. occidentalis , the species status of the California endemic island fence lizard ( S. becki ), and the spectacular radiation of Sceloporus lizards.

California↗

USGS2025

The story of the Penobscot River Ecology Mural: A 10-step process for scientists to create public art

Rivers are home to a wide variety of biota, including fishes, amphibians, reptiles, birds, freshwater mussels, aquatic insects, and microscopic organisms that fill unique niches to support broader ecosystem functions. While the general public may be aware of recreationally relevant biological life (e.g., fishes and insects to model flyfishing flies from), they may not be aware of more obscure yet important taxa. For example, freshwater mussels (Unionidae) improve water quality and clarity of rivers through filtration ( Vaughn, 2018), which is vital to riverine ecosystems. Despite this importance, lack of public knowledge about freshwater mussels is the second biggest challenge to their management ( Bouska et al., 2018). How do we best get the public to see value in underappreciated taxa to support their conservation? Public art installations can spread awareness about science effectively because they distill information for broader audiences, are eye-catching, and reach people through an emotional, aesthetic, and personal lens ( Thompson et al., 2023). While invertebrates are generally viewed by the public with fear and aversion ( Kellert, 1993) this can be ameliorated through interaction and learning, particularly for children ( Miller et al., 2025). Through cross-disciplinary collaboration between artists, scientists and the local community, we created the “Penobscot River Ecology Mural,” a scientifically informed artwork featuring underappreciated taxa like mussels and insects. In this article, we will elucidate the story of how we successfully made this piece through 10 steps, which provide a blueprint for future endeavors.

Maine↗

USGS2026

Two-stage approach to automatic detection with machine learning for improved surveillance of the invasive Cuban treefrog

The Cuban treefrog ( Osteopilus septentrionalis ), as an invasive species in the southern United States, presents a need for effective surveillance. Automated detection expedites processing of audio data for large-scale surveillance and monitoring programs. However, current available methods commonly used for anuran species have not been sufficient to detect Cuban treefrogs. Here, we present results from a two-stage method for automated detection that employs both cross-correlation template matching and secondary supervised learning classifiers. In the first stage, audio data are screened for initial detections using template matching, in which the detections contain both true and false positives. In the second stage, the false positives are screened out using classifier algorithms. We used this method to process 139,985 audio recordings, consisting of 596,046 total minutes, collected at 13 locations in Louisiana and Florida from 2014 to 2022. From the stage 1 template matching, we detected 83,191 Cuban treefrog signals across recordings. The stage 2 machine learning model was able to identify stage 1 false positive detections with a testing accuracy of 98.46% and a testing false positive rate of 1.116%. After pruning false positive detections, a total of 20,271 individual Cuban treefrog detections remained, distributed mainly across 3 sites in an area with known presence. Locations with presumed absence had an easily verifiable number of false positive detections ( n = 109 across all other sites). The two-stage methodology utilizing both template matching and machine learning algorithms can be integrated into wildlife surveillance or monitoring programs for species with distinctive, conserved calls as an effective way to achieve sensitive species detection with a low incidence of false positives.

Florida, Louisiana↗

USGS2024

Counting the chorus: A bioacoustic indicator of population density

Passive acoustic monitoring has grown in utility for tracking wildlife populations, although challenges remain when using acoustic detections to monitor population size and density. Distance sampling is considered the ‘gold standard’ for estimating animal densities but has several important limitations, especially for rare, cryptic, and high-density species. Here, we test the performance of a simple, quickly derived bioacoustic indicator for monitoring population density: call density—the proportion of recording samples containing vocalizations. Over three years, we collected synchronized bioacoustic and point-transect distance sampling data for eight forest bird species native to the Island of Hawai‘i, including four endangered species, across diverse ecosystems ranging from subalpine dry woodland to montane rainforest. The species studied exhibit varied population structures, from gregarious flocks to small, territorial family groups. Our results revealed significant, strong correlations between call density and distance sampling-based animal density estimates for all species, demonstrating that call density is a reliable indicator of animal density that can be used independently or in combination with traditional monitoring methods. Our analysis uses a fixed amount of manual validation of machine learning classifier output examples, without requiring prohibitively high classifier performance, and is robust to variation in vocal activity rates across time and space, making it both adaptable and scalable. This approach could enhance passive acoustic monitoring by providing a more sensitive population health indicator than commonly used detection/nondetection methods, facilitating prompt conservation and management decisions, particularly for species that are difficult to monitor with distance sampling.

Hawaii↗

USGS2009

Effects of roads, topography, and land use on forest cover dynamics in the Brazilian Atlantic Forest

Roads and topography can determine patterns of land use and distribution of forest cover, particularly in tropical regions. We evaluated how road density, land use, and topography affected forest fragmentation, deforestation and forest regrowth in a Brazilian Atlantic Forest region near the city of São Paulo. We mapped roads and land use/land cover for three years (1962, 1981 and 2000) from historical aerial photographs, and summarized the distribution of roads, land use/land cover and topography within a grid of 94 non-overlapping 100 ha squares. We used generalized least squares regression models for data analysis. Our models showed that forest fragmentation and deforestation depended on topography, land use and road density, whereas forest regrowth depended primarily on land use. However, the relationships between these variables and forest dynamics changed in the two studied periods; land use and slope were the strongest predictors from 1962 to 1981, and past (1962) road density and land use were the strongest predictors for the following period (1981–2000). Roads had the strongest relationship with deforestation and forest fragmentation when the expansions of agriculture and buildings were limited to already deforested areas, and when there was a rapid expansion of development, under influence of São Paulo city. Furthermore, the past (1962) road network was more important than the recent road network (1981) when explaining forest dynamics between 1981 and 2000, suggesting a long-term effect of roads. Roads are permanent scars on the landscape and facilitate deforestation and forest fragmentation due to increased accessibility and land valorization, which control land-use and land-cover dynamics. Topography directly affected deforestation, agriculture and road expansion, mainly between 1962 and 1981. Forest are thus in peril where there are more roads, and long-term conservation strategies should consider ways to mitigate roads as permanent landscape features and drivers facilitators of deforestation and forest fragmentation.

São Paulo↗

USGS2020

Conservation genomics in a changing arctic

Although logistically challenging to study, the Arctic is a bellwether for global change and is becoming a model for questions pertinent to the persistence of biodiversity. Disruption of Arctic ecosystems is accelerating, with impacts ranging from mixing of biotic communities to individual behavioral responses. Understanding these changes is crucial for conservation and sustainable economic development. Genomic approaches are providing transformative insights into biotic responses to environmental change, but have seen limited application in the Arctic due to a series of limitations. To meet the promise of genome analyses, we urge rigorous development of biorepositories from high latitudes to provide essential libraries to improve the conservation, monitoring, and management of Arctic ecosystems through genomic approaches.

Trends in Ecology and Evolution↗