Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Cells”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,621 records · Page 90Linked to original sources

Paenibacillus thiaminolyticus is not the cause of thiamine deficiency impeding lake trout ( Salvelinus namaycush ) recruitment in the Great Lakes

Thiamine (vitamin B 1 ) deficiency is a global concern affecting wildlife, livestock, and humans. In Great Lakes salmonines, thiamine deficiency causes embryo mortality and is an impediment to restoration of native lake trout ( Salvelinus namaycush ) stocks. Thiamine deficiency in fish may result from a diet of prey with high levels of thiaminase I. The discoveries that the bacterial species Paenibacillus thiaminolyticus produces thiaminase I, is found in viscera of thiaminase-containing prey fish, and causes mortality when fed to lake trout in the laboratory provided circumstantial evidence implicating P. thiaminolyticus . This study quantified the contribution of P. thiaminolyticus to the total thiaminase I activity in multiple trophic levels of Great Lakes food webs. Unexpectedly, no relationship between thiaminase activity and either the amount of P. thiaminolyticus thiaminase I protein or the abundance of P. thiaminolyticus cells was found. These results demonstrate that P. thiaminolyticus is not the primary source of thiaminase activity affecting Great Lakes salmonines and calls into question the long-standing assumption that P. thiaminolyticus is the source of thiaminase in other wild and domestic animals.

Great Lakes↗

Oral immunization of rainbow trout ( Salmo gairdneri ) against an etiologic agent of "redmouth disease"

Rainbow trout were fed a pelleted diet containing killed cells of the etiologic agent of a bacterial disease, redmouth. These fish in addition to appropriate controls were subsequently challenged with virulent homologous organisms. Ninety per cent of the redmouth immunized fish survived the basic challenge using virulent organisms in contrast to 20% survival for the controls. Multiple challenge doses at increased levels also are discussed.

Journal of the Fisheries Research Board of Canada↗

Infectious pancreatic necrosis: Selection of virus-free stock from a population of carrier trout

Infectious pancreatic necrosis (IPN) is a virulent disease of young trouts and is easily transmitted from infected animals through water and with eggs. At present, the most effective control measure consists of propagation of specific pathogen-free stock. Methods are described for using fish cell cultures to detect IPN virus in peritoneal washes, feces, and gonadal fluids and thereby to identifiy carrier and non-carrier fish. The procedures were used to derive virus-free progeny from a hatchery trout population containing about one-third carrier fish. The progeny were reared to maturity, spawned for 3 successive years, and at each spawning they proved free of virus. Recommendations and precautions are given for those who may wish to apply the procedures.

Journal of the Fisheries Research Board of Canada↗

Morphology of certain viruses of Salmonid Fishes. I. in vitro studies of some viruses causing Hematopoietic Necrosis

An electron microscope study was performed on three virus isolates that caused hematopoietic necrosis in salmonid fishes: infectious hematopoietic necrosis (IHN), Oregon Sockeye Disease (OSD), and Sacramento River Chinook Salmon Disease (SRCD). All three isolates were examined by negative staining of fathead minnow (FHM) monolayer tissue culture concentrates and IHN virus was also examined in thin sections of FHM cells. Viruslike particles were observed in infected tissues, but similar structures were not found in uninfected cultures. All three isolates were bullet-shaped, but oval and truncated forms were also observed. Mean measurements of particles from IHN-virus-infected tissue were 158 × 90 mμ. They consisted of an outer coat 15 mμ thick, a core 60 mμ in diameter, subunits about 5 mμ, and an axial pore about 20 mμ in diameter. These particles also were seen budding from the cytoplasmic membrane. Similar particles from SRCD were 159 × 90 mμ and isolates from OSD were 181 × 91 mμ. The three isolates were morphologically indistinguishable from one another and the greater length of OSD was considered insignificant. IHN, SRCD, and OSD viruses were tentatively placed in the rhabdovirus group, but serological studies are needed to determine if they are antigenically identical or should be included as separate members. Biochemical and physical characteristics of these viruses and a comparison with other salmonid viruses is also discussed.

Journal of the Fisheries Research Board of Canada↗

Serological diagnosis of corynebacterial kidney disease of salmonids

An immunodiffusion test is described which provides a rapid, sensitive, and definitive diagnosis of corynebacterial kidney disease of salmonid fishes. Specific precipitin lines are formed within 24 h when rabbit antiserum is reacted with kidney disease cell suspensions or internal tissue homogenates containing the specific bacterium. No precipitin lines are formed with tissue homogenates from healthy fish or from those injected with other fish pathogenic bacteria.

Journal of the Fisheries Research Board of Canada↗

Statistical methods for estimating normal blood chemistry ranges and variance in rainbow trout (Salmo gairdneri), Shasta Strain

Gaussian and nonparametric (percentile estimate and tolerance interval) statistical methods were used to estimate normal ranges for blood chemistry (bicarbonate, bilirubin, calcium, hematocrit, hemoglobin, magnesium, mean cell hemoglobin concentration, osmolality, inorganic phosphorus, and pH for juvenile rainbow ( Salmo gairdneri , Shasta strain) trout held under defined environmental conditions. The percentile estimate and Gaussian methods gave similar normal ranges, whereas the tolerance interval method gave consistently wider ranges for all blood variables except hemoglobin. If the underlying frequency distribution is unknown, the percentile estimate procedure would be the method of choice.

Journal of the Fisheries Research Board of Canada↗

Glomerular mesangial fibrosis in hatchery-reared rainbow trout (Salmo gairdneri)

Light and electron microscopic studies were performed on tissues of hatchery-reared rainbow trout ( Salmo gairdneri ) having a disease of currently unknown etiology with external symptoms of severe edema which causes increased mortality rate. Comparison with unaffected trout tissues revealed loss of cellularity in glomerular tufts with a replacement of mesangial cells by connective tissue. Ultrastructural studies showed the material to be collagen and established the diagnosis of glomerular mesangial fibrosis. The glomerular lesion was associated with alterations in lining epithelium of proximal tubules and extensive debris within tubule lumens. The findings are compared to glomerular lesions in mammalian and amphibian kidney.

Journal of the Fisheries Research Board of Canada↗

Variation in winter diet of southern Beaufort Sea polar bears inferred from stable isotope analysis

Ringed seals ( Phoca hispida Schreber, 1775 = Pusa hispida (Schreber, 1775)) and bearded seals ( Erignathus barbatus (Erxleben, 1777)) represent the majority of the polar bear ( Ursus maritimus Phipps, 1774) annual diet. However, remains of lower trophic level bowhead whales ( Balaena mysticetus L., 1758) are available in the southern Beaufort Sea and their dietary contribution to polar bears has been unknown. We used stable isotope ( 13 C/ 12 C, δ 13 C, 15 N/ 14 N, and δ 15 N) analysis to determine the diet composition of polar bears sampled along Alaska’s Beaufort Sea coast in March and April 2003 and 2004. The mean δ 15 N values of polar bear blood cells were 19.5‰ (SD = 0.7‰) in 2003 and 19.9‰ (SD = 0.7‰) in 2004. Mixing models indicated bowhead whales composed 11%–26% (95% CI) of the diets of sampled polar bears in 2003, and 0%–14% (95% CI) in 2004. This suggests significant variability in the proportion of lower trophic level prey in polar bear diets among individuals and between years. Polar bears depend on sea ice for hunting seals, and the temporal and spatial availabilities of sea ice are projected to decline. Consumption of low trophic level foods documented here suggests bears may increasingly scavenge such foods in the future.

Canadian Journal of Zoology↗

Comparative morphology of zebra ( Dreissena polymorpha ) and quagga ( Dreissena bugensis ) mussel sperm: Light and electron microscopy

Adult zebra ( Dreissena polymorpha ) and quagga ( Dreissena bugensis ) mussels were induced to release large quantities of live spermatozoa by the administration of 5-hydroxytryptamine (serotonin). Sperm were photographed alive using phase-contrast microscopy and were fixed subsequently with glutaraldehyde followed by osmium tetroxide for eventual examination by transmission or scanning electron microscopy. The sperm of both genera are of the ect-aquasperm type. Their overall dimensions and shape allow for easy discrimination at the light and scanning electron microscopy level. Transmission electron microscopy of the cells reveals a barrel-shaped nucleus in zebra mussel sperm and an elongated nucleus in quagga mussel sperm. In both species, an acrosome is cradled in a nuclear fossa. The ultrastructure of the acrosome and axial body, however, is distinctive for each species. The structures of the midpiece are shown, including a unique mitochondrial "skirt" that includes densely packed parallel cristae and extends in a narrow sheet from the mitochondria.

Canadian Journal of Zoology↗

Clearance of laboratory-cultured bacteria by freshwater bivalves: Differences between lentic and lotic unionids

Nine species of unionids cleared laboratory-raised Escherichia coli from artificial pond water. The six unionid species collected from rivers had higher clearance rates than the three species collected from ponds, when clearance was normalized to millilitres per gram of dry tissue mass per minute. Analysis of variance indicated that all lotic unionids examined form a group with similar clearance rates. When normalized on the basis of gill surface area, rates of clearance by all of the lotic unionids become remarkably similar to one another regardless of mass, but differ significantly from those of the lentic unionids. The cirri found on the laterofrontal cells of the gills of lotic unionids tend to be complex, containing > 25 cilia per cirral plate, while the cirri of the unionid species collected from ponds have smaller cirri (< 16 cilia per cirral plate). There was a strong correlation between cirral surface area (mm 2 ) per milligram of dry tissue and clearance rate among the unionid species studied. As a comparison, Corbicula fluminea and Dreissena polymorpha were also examined and both tended to clear bacteria more rapidly than the lotic unionids.

Canadian Journal of Zoology↗

A federal-state partnership for mapping Florida's coast and seafloor

The Florida Coastal Mapping Program, a partnership of state and federal agencies, has a goal of having modern, consistent, high- resolution sea-floor data for all of Florida’s coastal zone in the next decade to support a myriad of coastal zone science and management applications. One of the early steps in the implementation process is to prioritize and justify mapping needs. This is accomplished by holding six regional workshops across the state during which stakeholders and partners are introduced to a newly developed geospatial prioritization tool. Users independently utilize the tool to populate grid cells for a given region, and the result is a cumulative perspective on sea floor mapping priorities to inform future mapping initiatives. The tool also allows participants to indicate their primary use of sea floor mapping data and types of additional data required for their science or management need.

Florida↗

Does littoral sand bypass the head of Mugu Submarine Canyon? - a modeling study

A newly developed sand-tracer code for the process-based model Delft3D (Deltares, The Netherlands) was used to simulate the littoral transport near the head of the Mugu Submarine Canyon in California, USA. For westerly swells, which account for more than 90% of the wave conditions in the region, the sand tracers in the downcoast littoral drift were unable to bypass the canyon head. A flow convergence near the upcoast rim of the canyon intercepts the tracers and moves them either offshore onto the shelf just west of the canyon rim (low wave height conditions) or into the canyon head (storm wave conditions). This finding supports the notion that Mugu Canyon is the true terminus of the Santa Barbara Littoral Cell.

Conference Paper↗

Geologic controls on sediment distribution and transport pathways around the Chandeleur Islands, LA., USA

Geophysical surveys around the Chandeleur Islands provide the necessary data to map the thickness and distribution of the Holocene deposit associated with this barrier island system. This system rests uncomformably on St. Bernard Delta deposits of the Mississippi Delta plain and is thinnest under the central part of the island chain and thickest at the northern and southern ends. The zone of divergence in the bidirectional littoral transport system coincides with the thin central part. An estimate of northward littoral transport rate based on lithosome age and the volume of sediment that has accumulated at the northern end of the transport cell suggests the average transport rate over the life of the system is greater than present day fair-weather estimates. This difference may be attributed to changes in transport rates through the life of the system, to changes in the rate of sea-level rise or to storms playing a more dominant role than fair-weather waves in littoral transport.

Louisiana↗

Genesis of a regionally widespread celadonitic chert ironstone bed overlying upper Lias manganese deposits, Hungary

Mineralogy and chemical composition are presented for a chert-ironstone bed that overlies the ??rk??t Mn deposit. This bed is mottled green-brown in its lower and upper parts, which are composed of quartz, goethite and celadonite. These parts of the bed are interpreted to be strongly altered tuffs, reflecting oxidic, low-temperature alteration of a hydrated, Fe-rich, Al-poor tuff, and K and Mg uptake from seawater. The middle part of the bed is a mineralized bacterial mat (quartz, goethite). Textures resembling bacterial cells and colonies are common, with wavy, bulbous laminations composed of mounds overlying a mesh-work stromatolite-like texture constructed of micrometre-size Fe oxides. This bed is concordant with the underlying Mn deposit and marks the termination of Mn accumulation. Although no genetic connection exists between the two, the rocks adjacent to the contact record the oceanographic and bottom-water conditions extant when accumulation of one of the major Mn deposits of Europe ended, when the Transdanubian Range was located in the middle of the Adria-Apulian microcontinent between the Neotethys and Atlantic-Ligurian seaways. A pyroclastic origin for part of the bed has significance for the Toarcian of Central Europe because evidence of volcanism occurring at that time is otherwise sparse. ?? 2010 Geological Society of London.

Journal of the Geological Society↗

Characterization of the OmyY1 region on the rainbow trout Y chromosome

We characterized the male-specific region on the Y chromosome of rainbow trout, which contains both sdY (the sex-determining gene) and the male-specific genetic marker, OmyY1. Several clones containing the OmyY1 marker were screened from a BAC library from a YY clonal line and found to be part of an 800 kb BAC contig. Using fluorescence in situ hybridization (FISH), these clones were localized to the end of the short arm of the Y chromosome in rainbow trout, with an additional signal on the end of the X chromosome in many cells. We sequenced a minimum tiling path of these clones using Illumina and 454 pyrosequencing. The region is rich in transposons and rDNA, but also appears to contain several single-copy protein-coding genes. Most of these genes are also found on the X chromosome; and in several cases sex-specific SNPs in these genes were identified between the male (YY) and female (XX) homozygous clonal lines. Additional genes were identified by hybridization of the BACs to the cGRASP salmonid 4x44K oligo microarray. By BLASTn evaluations using hypothetical transcripts of OmyY1-linked candidate genes as query against several EST databases, we conclude at least 12 of these candidate genes are likely functional, and expressed.

International Journal of Genomics↗

Archaeal diversity and CO2 fixers in carbonate-/siliciclastic-rock groundwater ecosystems

Groundwater environments provide habitats for diverse microbial communities, and although Archaea usually represent a minor fraction of communities, they are involved in key biogeochemical cycles. We analysed the archaeal diversity within a mixed carbonate-rock/siliciclastic-rock aquifer system, vertically from surface soils to subsurface groundwater including aquifer and aquitard rocks. Archaeal diversity was also characterized along a monitoring well transect that spanned surface land uses from forest/woodland to grassland and cropland. Sequencing of 16S rRNA genes showed that only a few surface soil-inhabiting Archaea were present in the groundwater suggesting a restricted input from the surface. Dominant groups in the groundwater belonged to the marine group I (MG-I) Thaumarchaeota and the Woesearchaeota. Most of the groups detected in the aquitard and aquifer rock samples belonged to either cultured or predicted lithoautotrophs (e.g., Thaumarchaeota or Hadesarchaea). Furthermore, to target autotrophs, a series of 13 CO 2 stable isotope-probing experiments were conducted using filter pieces obtained after filtration of 10,000 L of groundwater to concentrate cells. These incubations identified the SAGMCG Thaumarchaeota and Bathyarchaeota as groundwater autotrophs. Overall, the results suggest that the majority of Archaea on rocks are fixing CO 2 , while archaeal autotrophy seems to be limited in the groundwater.

Archaea↗

Inhibition of Akt enhances the chemopreventive effects of topical rapamycin in mouse skin

The PI3Kinase/Akt/mTOR pathway has important roles in cancer development for multiple tumor types, including UV-induced non-melanoma skin cancer. Immunosuppressed populations are at increased risk of aggressive cutaneous squamous cell carcinoma (SCC). Individuals who are treated with rapamycin, (sirolimus, a classical mTOR inhibitor) have significantly decreased rates of developing new cutaneous SCCs compared to those that receive traditional immunosuppression. However, systemic rapamycin use can lead to significant adverse events. Here we explored the use of topical rapamycin as a chemopreventive agent in the context of solar simulated light (SSL)-induced skin carcinogenesis. In SKH-1 mice, topical rapamycin treatment decreased tumor yields when applied after completion of 15 weeks of SSL exposure compared to controls. However, applying rapamycin during SSL exposure for 15 weeks, and continuing for 10 weeks after UV treatment, increased tumor yields. We also examined whether a combinatorial approach might result in more significant tumor suppression by rapamycin. We validated that rapamycin causes increased Akt (S473) phosphorylation in the epidermis after SSL, and show for the first time that this dysregulation can be inhibited in vivo by a selective PDK1/Akt inhibitor, PHT-427. Combining rapamycin with PHT-427 on tumor prone skin additively caused a significant reduction of tumor multiplicity compared to vehicle controls. Our findings indicate that patients taking rapamycin should avoid sun exposure, and that combining topical mTOR inhibitors and Akt inhibitors may be a viable chemoprevention option for individuals at high risk for cutaneous SCC.

Cancer Prevention Research↗