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At least 163 records · Page 9Linked to original sources

Relating systematic molecular and textural properties of graptolite pyrolyzed via gold tube hydrous pyrolysis: Implications for thermal proxies in lower Paleozoic marine shales

A series of gold tube pyrolysis experiments (72 h, 300–550 °C, 50 MPa) conducted on a graptolite-rich lower Paleozoic marine shale generated pyrolysis residues for a comprehensive evaluation of the molecular and structural variability of three types of graptolite periderm. Organic petrology, Raman spectroscopy, and field emission scanning electron microscopy (FE-SEM) with energy dispersive spectroscopy (EDS) were combined to evaluate the thermal evolution process. The three types of graptolite periderm, namely granular, non-granular, and nodular graptolite, were analyzed by Raman spectroscopy wherein point measurements were obtained after the maceral was identified and the location verified by organic petrology. Distinct thermal evolution pathways among non-granular, granular, and nodular graptolite periderms were recorded. The evolution patterns of the Raman parameters, particularly D1 and G bands, highlight the differences in geochemical composition of the graptolite periderm types and the alteration of molecular structure with increasing thermal maturity. Raman parameters D1 (position of the D1 peak), G-FWHM (full width at half maximum of the G peak), and ratios D1-FWHM/G-FWHM (full width at half maximum of the D1 peak ratioed to G-FWHM) and A D1 /A G (ratio of D1 and G peak intensities) showed effectiveness in assessing thermal maturity. Bireflectance with increasing gold tube pyrolysis temperature followed a hierarchy: non-granular > granular > nodular, reflecting different molecular alignment intensities. Qualitative FE-SEM evaluation showed that fine-grained mineral inclusions (primarily Fe-sulfide as determined via EDS) were associated with the graptolite populations, with granular graptolite containing greater amounts of coarser-grained (e.g., ∼300–1400 nm) mineral inclusions relative to non-granular and nodular graptolite, which contain finer-grained (e.g., ∼100–200 nm) inclusions difficult to resolve with optical microscopy. These findings are investigated to highlight the mechanisms that drive organic matter evolution within graptolite during thermal maturation, as well as to explore some of the limitations of using spectroscopic parameters as thermal maturity proxies.

International Journal of Coal Geology

California State Waters Map Series — Drakes Bay and vicinity, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Drakes Bay and Vicinity map area is located in northern California, about 30 km north of San Francisco and about 65 km south of Fort Ross. The map area is in the northern part of the Gulf of the Farallones National Marine Sanctuary, and it includes all or parts of four California Marine Protected Areas. The largely undeveloped onshore part of the map area, which occupies much of the southern and southeastern parts of the Point Reyes peninsula, is used primarily for grazing, as well as recreation, as it is home to the Point Reyes National Seashore. The triangular Point Reyes peninsula, which lies completely west of the San Andreas Fault Zone, is bounded by the steep terrain of Inverness Ridge along its northeastern margin, Tomales Point at its northernmost tip, Point Reyes at its southwesternmost point, and Bolinas at its southern end. The landscape in between includes (from southeast to northwest) the sandy beaches along Drakes Bay, the estuaries of Drakes Estero and Estero de Limantour, and the long, windswept Point Reyes Beach, which is backed by an extensive dune field. The seafloor in the map area generally extends from the shoreline to water depths of about 40 to 50 m, except for the area south of the Point Reyes headland where water depths reach 60 to 70 m. This bathymetric gradient south and west of the Point Reyes headland is related to north-side-up motion along the Point Reyes Fault Zone. Except for the bathymetric gradient across the Point Reyes Fault Zone, the bedrock platform in the nearshore and inner shelf areas (50 to 60 m depth) is relatively flat (less than 1.0°) and is overlain by sand-sized to coarser grained sediment. Finer grained sediments are found in water depths greater than 60 m south of the Point Reyes headland, but they also extend into shallower (less than 40 m) water within Drakes Bay. Surficial and shallow sediments were deposited in the last about 21,000 years during the approximately 125-m sea-level rise that followed the last major lowstand associated with the Last Glacial Maximum, at which time the entire Drakes Bay and Vicinity map area was emergent and the shoreline was about 30 km south and west of the present-day shoreline. Tectonic influences that impact the shelf morphology and geology in the map area are related to local faulting, folding, uplift, and subsidence. Offshore of the Point Reyes headland, granitic basement rocks are offset vertically about 1.4 km along the Point Reyes Fault Zone; this uplift, combined with west-side-up offset on the San Andreas Fault Zone, has resulted in uplift of the Point Reyes peninsula and the adjacent shelf. Late Pleistocene uplift of marine terraces on the southern Point Reyes peninsula suggests active deformation of offshore structures west of the San Andreas Fault Zone. Pervasive stratal thinning within inferred uppermost Pliocene and Pleistocene deposits above the west strand of the Point Reyes Fault Zone suggests Quaternary active shortening of the curvilinear, northeast- to north-dipping Point Reyes Fault Zone. Lack of clear deformation in the uppermost Pleistocene and Holocene deposits suggests that activity along the Point Reyes Fault Zone has ceased or slowed since about 21,000 years ago. Seafloor habitats in the Drakes Bay and Vicinity map area range from unconsolidated continental-shelf sediment to hard substrate. Rocky-shelf outcrops and rubble are considered to be promising potential habitats for rockfish and lingcod, both of which are recreationally and commercially important species. Circulation over the continental shelf in the map area is dominated by the southward-flowing California Current, the eastern limb of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. The current flow generally is southeastward during the spring and summer; however, during the fall and winter, the otherwise persistent northwest winds are sometimes weak or absent, causing the California Current to move farther offshore and the Davidson Current, a weaker, northward-flowing countercurrent, to become active. Sediment transport in the map area largely is controlled by surface waves and tidal currents in the nearshore and, at depths greater than 20 to 30 m, by tidal and subtidal currents. In the map area, nearshore littoral drift of sand and coarse sediment is to the south, owing to the dominant west-northwest swell direction, and scour from large waves and tidal currents removes and redistributes sediment over large areas of the inner shelf. Tidal currents are particularly strong over the shelf in the map area, and they dominate the current regime in the nearshore. Further offshore, bottom currents generally flow to the northwest, distributing finer grained sediment accordingly.

California

Paleontology of the upper Eocene to quaternary postimpact section in the USGS-NASA Langley core, Hampton, Virginia

The USGS-NASA Langley corehole was drilled in 2000 in Hampton, Va. The core serves as a benchmark for the study of calcareous nannofossils, dinoflagellates, diatoms and silico flagellates, mollusks, ostracodes, planktonic foraminifera and bolboformids, and vertebrate remains in the upper Eocene, Oligocene, Miocene, and Pliocene sediments in southeastern Virginia. These sediments were deposited after the comet or asteroid impact that produced the Chesapeake Bay impact structure. The Chickahominy Formation was deposited rapidly in outer neritic to upper bathyal marine environments during the last 2 million years of the late Eocene. The Drummonds Corner beds are newly recognized in the Langley core. These beds appear to represent shallower water or more nearshore deposition than the underlying Chickahominy deposits. Paleontology indicates an age in the later part of the early Oligocene, with a sharp floral and faunal break between the Drummonds Corner beds and the underlying Chickahominy Formation. Late Oligocene sedimentation is represented by the Old Church Formation. The record of early and middle Miocene deposition in the Langley core is incomplete. The Calvert Formation records brief episodes of deposition in three members, which are separated by unconformities and are called the informal Newport News beds, the Plum Point Member, and the Calvert Beach Member. A second episode of rapid deposition at the Langley site is preserved as the upper Miocene St. Marys and Eastover Formations. The Eastover is overlain unconformably by the Yorktown Formation, which is both late early and early late Pliocene. The highest unit, the Tabb Formation (Pleistocene), was not studied paleontologically. Continued movement along faults and fractures of the crater and nearby region may have enhanced the contributions of older material into the various units filling the Chesapeake Bay impact crater, as suggested by the conspicuous reworking of microfossils in many of the samples from the upper Eocene and younger units in the USGS-NASA Langley core.

Virginia

One size does not fit all: Adapting mark-recapture and occupancy models for state uncertainty

Multistate capture?recapture models continue to be employed with greater frequency to test hypotheses about metapopulation dynamics and life history, and more recently disease dynamics. In recent years efforts have begun to adjust these models for cases where there is uncertainty about an animal?s state upon capture. These efforts can be categorized into models that permit misclassification between two states to occur in either direction or one direction, where state is certain for a subset of individuals or is always uncertain, and where estimation is based on one sampling occasion per period of interest or multiple sampling occasions per period. State uncertainty also arises in modeling patch occupancy dynamics. I consider several case studies involving bird and marine mammal studies that illustrate how misclassified states can arise, and outline model structures for properly utilizing the data that are produced. In each case misclassification occurs in only one direction (thus there is a subset of individuals or patches where state is known with certainty), and there are multiple sampling occasions per period of interest. For the cases involving capture?recapture data I allude to a general model structure that could include each example as a special case. However, this collection of cases also illustrates how difficult it is to develop a model structure that can be directly useful for answering every ecological question of interest and account for every type of data from the field.

Book chapter

Tectonic setting of the Tertiary volcanic rocks of the Olympic Peninsula, Washington

Lower and middle Eocene abyssal and Hawaiian type tholeiitic basalts form two accumulations that apparently were once far out on the east flank of the Juan de Fuca Ridge, within the Juan de Fuca plate. One of these (more than 15 km thick) is near the eastern and southeastern periphery of the Olympic Peninsula, and the other (about 5 km thick) is on the north. The tholeiites stratigraphically overlie and interfinger with Paleocene(?) and lower and middle Eocene marine turbidites and shales; one flow includes boulders that, like clasts in the sediments, were derived from the North American continental plate immediately to the east. The basalts are overlain stratigraphically by middle Eocene to middle Miocene clastic marine sedimentary rocks, which are in turn overlapped unconformably on the south and west by upper Miocene (?) and Pliocene, chiefly shallow-marine clastic rocks. These various peripheral rocks flank a middle or late Miocene structurally complex dome, or orocline convex to the east, in which originally east dipping and low angle late Eocene to late Miocene underthrusts are flexed. The outermost underthrust of the complex separates the chiefly volcanic peripheral rocks to the north, east, and south from stratigraphically correlative and comparable, though predominantly sedimentary, core rocks arranged in northwest trending arcuate belts or packets bounded by fault zones. Before underthrusting, and perhaps oroclinal folding connected with doming, the pre-middle Miocene section was possibly 150 to 200 km wide compared with the present Olympic Peninsula which is 120 km wide. The section accumulated on the ocean floor near the western margin of the continent, before and during subduction of the oceanic crust.

Washington

Characterization of the Hosgri Fault Zone and adjacent structures in the offshore Santa Maria Basin, south-central California

The Hosgri Fault Zone trends subparallel to the south-central California coast for 110 km from north of Point Estero to south of Purisima Point and forms the eastern margin of the present offshore Santa Maria Basin. Knowledge of the attributes of the Hosgri Fault Zone is important for petroleum development, seismic engineering, and environmental planning in the region. Because it lies offshore along its entire reach, our characterizations of the Hosgri Fault Zone and adjacent structures are primarily based on the analysis of over 10,000 km of common-depth-point marine seismic reflection data collected from a 5,000-km2 area of the central and eastern parts of the offshore Santa Maria Basin. We describe and illustrate the along-strike and downdip geometry of the Hosgri Fault Zone over its entire length and provide examples of interpreted seismic reflection records and a map of the structural trends of the fault zone and adjacent structures in the eastern offshore Santa Maria Basin. The seismic data are integrated with offshore well and seafloor geologic data to describe the age and seismic appearance of offshore geologic units and marker horizons. We develop a basin-wide seismic velocity model for depth conversions and map three major unconformities along the eastern offshore Santa Maria Basin. Accompanying plates include maps that are also presented as figures in the report. Appendix A provides microfossil data from selected wells and appendix B includes uninterpreted copies of the annotated seismic record sections illustrated in the chapter. Features of the Hosgri Fault Zone documented in this investigation are suggestive of both lateral and reverse slip. Characteristics indicative of lateral slip include (1) the linear to curvilinear character of the mapped trace of the fault zone, (2) changes in structural trend along and across the fault zone that diminish in magnitude toward the ends of the fault zone, (3) localized compressional and extensional structures characteristic of constraining and releasing bends and stepovers, (4) changes in the sense and magnitude of vertical separation along strike within the fault zone, and (5) changes in downdip geometry between the major traces and segments of the fault zone. Characteristics indicative of reverse slip include (1) reverse fault geometries that occur across major strands of the fault zone and (2) fault-bend folds and localized thrust faults that occur along the northern and southern reaches of the fault. Analyses of high-resolution, subbottom profiler and side-scan sonar records indicate localized Holocene activity along most of the extent of the fault zone. Collectively, these features are the basis of our characterization of the Hosgri Fault Zone as an active, 110-km-long, convergent right-oblique slip (transpressional) fault with identified northern and southern terminations. This interpretation is consistent with recently published analyses of onshore geologic data, regional tectonic kinematic models, and instrumental seismicity.

California

Wide-ranging phylogeographic structure of invasive red lionfish in the Western Atlantic and Greater Caribbean

The red lionfish ( Pterois volitans ) is an invasive predatory marine fish that has rapidly expanded its presence in the Western Hemisphere. We collected 214 invasive red lionfish samples from nine countries and territories, including seven unpublished locations. To more comprehensively evaluate connectivity, we compiled our d-loop sequence data with 846 published sequences, resulting in 1,060 samples from 14 locations. We found low nucleotide diversity ( π = 0.003) and moderate haplotype diversity ( h = 0.59). Using haplotype population pairwise Φ ST tests, we analyzed possible phylogeographic breaks that were previously proposed based on other reef organisms. We found support for the Bahamas/Turks/Caicos versus Caribbean break ( Φ ST = 0.12) but not for the Northwestern Caribbean, Eastern Caribbean, or US East Coast versus Bahamas breaks. The Northern Region had higher variation and more haplotypes, supporting introductions of at least five haplotypes to the region. Our wide-ranging samples showed that a lower-frequency haplotype in the Northern Region dominated the Southern Region and suggested multiple introductions, possibly to the south. We tested multiple scenarios of phylogeographic structure with analyses of molecular variance and found support for a Northern and Southern Region split at the Bahamas/Turks/Caicos versus Caribbean break (percentage of variation among regions = 8.49 %). We found that Puerto Rico clustered with the Southern Region more strongly than with the Northern Region, as opposed to previous reports. We also found the rare haplotype H03 for the first time in the southern Caribbean (Panama), indicating that either secondary releases occurred or that the low-frequency haplotypes have had time to disperse to extreme southern Caribbean locations.

Marine Biology

Evaluating a multispecies adaptive management framework: Must uncertainty impede effective decision-making?

Application of adaptive management to complex natural resource systems requires careful evaluation to ensure that the process leads to improved decision-making. As part of that evaluation, adaptive policies can be compared with alternative nonadaptive management scenarios. Also, the value of reducing structural (ecological) uncertainty to achieving management objectives can be quantified. A multispecies adaptive management framework was recently adopted by the Atlantic States Marine Fisheries Commission for sustainable harvest of Delaware Bay horseshoe crabs Limulus polyphemus, while maintaining adequate stopover habitat for migrating red knots Calidris canutus rufa , the focal shorebird species. The predictive model set encompassed the structural uncertainty in the relationships between horseshoe crab spawning, red knot weight gain and red knot vital rates. Stochastic dynamic programming was used to generate a state-dependent strategy for harvest decisions given that uncertainty. In this paper, we employed a management strategy evaluation approach to evaluate the performance of this adaptive management framework. Active adaptive management was used by including model weights as state variables in the optimization and reducing structural uncertainty by model weight updating. We found that the value of information for reducing structural uncertainty is expected to be low, because the uncertainty does not appear to impede effective management. Harvest policy responded to abundance levels of both species regardless of uncertainty in the specific relationship that generated those abundances. Thus, the expected horseshoe crab harvest and red knot abundance were similar when the population generating model was uncertain or known, and harvest policy was robust to structural uncertainty as specified. Synthesis and applications . The combination of management strategy evaluation with state-dependent strategies from stochastic dynamic programming was an informative approach to evaluate adaptive management performance and value of learning. Although natural resource decisions are characterized by uncertainty, not all uncertainty will cause decisions to be altered substantially, as we found in this case. It is important to incorporate uncertainty into the decision framing and evaluate the effect of reducing that uncertainty on achieving the desired outcomes

Journal of Applied Ecology

Preliminary assessment of carbon and nitrogen sequestration potential of wildfire-derived sediments stored by erosion control structures in forest ecosystems, southwest USA

The role of pyrogenic carbon (PyC) in the global carbon cycle is still incompletely characterized. Much work has been done to characterize PyC on landforms and in soils where it originates or in “terminal” reservoirs such as marine sediments. Less is known about intermediate reservoirs such as streams and rivers, and few studies have characterized hillslope and in-stream erosion control structures (ECS) designed to capture soils and sediments destabilized by wildfire. In this preliminary study, organic carbon (OC), total nitrogen (N), and stable isotope parameters, δ 13 C and δ 15 N, were compared to assess opportunities for carbon and nitrogen sequestration in postwildfire sediments (fluvents) deposited upgradient of ECS in ephemeral- and intermittent-stream channels. The variability of OC, N, δ 13 C, and δ 15 N were analyzed in conjunction with fire history, age of captured sediments, topographic position, and land cover. Comparison of samples in 2 watersheds indicates higher OC and N in ECS with more recently captured sediments located downstream of areas with higher burn severity. This is likely a consequence of (1) higher burn severity causing greater runoff, erosion, and transport of OC (organic matter) to ECS and (2) greater cumulative loss of OC and N in older sediments stored behind older ECS. In addition, C/N, δ 13 C, and δ 15 N results suggest that organic matter in sediments stored at older ECS are enriched in microbially processed biomass relative to those at newer ECS. We conservatively estimated the potential mean annual capture of OC by ECS, using values from the watershed with lower levels of OC, to be 3 to 4 metric tons, with a total potential storage of 293 to 368 metric tons in a watershed of 7.7 km 2 and total area of 2000 ECS estimated at 2.6 ha (203-255 metric tons/ha). We extrapolated the OC results to the regional level (southwest USA) to estimate the potential for carbon sequestration using these practices. We estimated a potential of 0.01 Pg, which is significant in terms of ecosystem services and regional efforts to promote carbon storage.

Arizona

Stakeholder attitudes and perspectives on wildlife disease surveillance as a component of a One Health approach in Thailand

Coordinated wildlife disease surveillance (WDS) can help professionals across disciplines effectively safeguard human, animal, and environmental health. The aims of this study were to understand how WDS in Thailand is utilized, valued, and can be improved within a One Health framework. An online questionnaire was distributed to 183 professionals (55.7% response rate) across Thailand working in wildlife, marine animal, livestock, domestic animal, zoo animal, environmental, and public health sectors. Twelve semi-structured interviews with key professionals were then performed. Three-quarters of survey respondents reported using WDS data and information. Sectors agreed upon ranking disease control (76.5% of respondents) as the most beneficial outcome of WDS, while fostering new ideas through collaboration was valued by few participants (2.0%). Accessing data collected by ones own sector was identified as the most challenging (50%) yet least difficult to improve (88.3%). Having legal authority to conduct WDS was the second most frequently identified challenge. Interviewees explained that legal documentation required for crossinstitutional collaborations posed a barrier to efficient communication and use of human resources. Survey respondents identified allocation of human resources (75.5%), adequate budget (71.6%), and having a clear communication system between sectors (71.6%) as highest priority areas for improvement to WDS in Thailand. Authorization from administrative officials and support from local community members were identified as challenges during in-person interviews. Future outreach should be directed towards these groups. As 42.9% of marine health professionals had difficulty knowing whom to contact in other sectors and 28.4% of survey respondents indicated that communication with marine health professionals was not applicable to their work, connecting the marine sector with other sectors may be prioritized. This study identifies priorities for addressing current challenges in the establishment of a general WDS system and information management system in Thailand while presenting a model for such evaluation in other regions.

One Health Newsletter

Quaternary sedimentation of the Alaskan Beaufort shelf: Influence of regional tectonics, fluctuating sea levels, and glacial sediment sources

The offshore stratigraphy of the Quaternary Gubik Formation of Arctic Alaska has been studied on high-resolution seismic profiles with a maximum sub-seafloor penetration of about 100 m. In general, marine transgressive subunits of the Gubik Formation are wedge-shaped on the shelf, thickening slightly seaward to the shelf break, beyond which they are offset by landslides and slumps. Beneath the eastern third of the Alaskan Beaufort shelf, active folding has created two persistent structural depressions, the Eastern and Western Wedge Terranes, in which the wedge morphology is especially well developed. The youngest transgressive marine wedge, which was deposited in such a way as to fill these depressions, leaving a generally flat present-day shelf surface, is inferred to be late Wisconsin or younger in age because it overlies a prominent disconformity interpreted to have been formed during the late Wisconsin glacial sea-level minimum. The thickness of this youngest wedge, Unit A, locally exceeds 40 m on the outer shelf, yet apparently relict gravel deposits collected from its seabed surface indicate that the depositional rate is presently quite low on the middle and outer shelf. Lithologies of the gravels are exotic to Alaska, but similar to suites exposed in the Canadian Arctic Islands. These observations suggest a depositional scenario in which the retreating Laurentide Ice Sheet shed sediment-laden icebergs from the Canadian Arctic Islands into the Arctic Ocean following the late Wisconsin glacial maximum. These bergs were then rafted westward by the Beaufort Gyre and grounded on the Alaskan shelf by northeasterly prevailing winds. Especially large numbers of bergs accumulated in the wedge terrane embayments-created as sea level rose-and melted there, filling the embayments with their sedimentary cargo. As glacial retreat slowed, depositional rates on the shelf dwindled. This mode of deposition in the Alaskan Beaufort wedge terranes may be typical of early post-glacial transgressive phases throughout Quaternary time. It has resulted in the preservation of disconformities that apparently formed during glacioeustatic lowstands, and whose seaward termination depths, appropriately corrected, may yield estimates of lowstand magnitudes. Knowledge of global sea-level fluctuations back through the Sangamon Interglacial (oxygen isotope stage 5e) and possible correlations with dated onshore deposits have facilitated a tentative correlation of major disconformities in the Beaufort Sea record with major 18O enrichment maxima in the oxygen isotope curve back through stage 8. In this tentative scheme, close similarities between the two data sets occur both in magnitudes and in numbers of fluctuations intervening between major correlation points. Further testing of the Quaternary depositional model suggested here and of the resulting sea level curve awaits the collection and dating of core samples from the Beaufort wedge terranes.

Alaska

Interactions among rainfall, fire, forbs and non-native grasses predict occupancy dynamics for the endangered Pacific pocket mouse (Perognathus longimembris pacificus) in a Mediterranean-type ecosystem

It is important to understand species-habitat relationships to implement effective adaptive management for rare species. However, it can be challenging to assess habitat associations and their relationships to abiotic stressors in dynamic habitats without the insights that can be gained from long-term monitoring. We report results from the first six years of extensive track tube monitoring of the largest two of three remaining extant populations of federally endangered Pacific pocket mouse ( Perognathus longimembris pacificus ) in a coastal Mediterranean-type ecosystem on Marine Corps Base, Camp Pendleton in southern California, USA. We used dynamic occupancy and structural equation modeling to assess potential drivers of population trends that included habitat, fire history, rainfall, disturbance, and the presence of other small mammals. We found that the variables that best predicted mouse occupancy were moderate to high forb and perennial herb cover (40–80%), and moderate to high open ground (20–70%) and low non-native grass cover (<20%), Non-native grass cover (>20%) was also a strong predictor of lower PPM colonization and increased extinction probabilities, with the extent of non-native grass cover being strongly influenced by annual rainfall and recency of fire. Our study adds to the growing literature on effects of invasive annual grasses on native species in Mediterranean-type ecosystems. We suggest that habitat management could be based upon promotion of open forb and perennial herb dominated habitats with reduction of non-native grasses by prescribed fire and other methods. These types of spatial and temporal monitoring programs can support land managers by creating a monitoring and management feedback loop. They can reveal landscape and environmental variables associated with species persistence, inform habitat management goals, and help managers to assess the success of management actions on populations of conservation concern.

California

Synchronous cycling of Ichthyophoniasis with Chinook salmon density revealed during the annual Yukon River spawning migration

Populations of Chinook salmon Oncorhynchus tshawytscha in the Yukon River declined by more than 57% between 2003 and 2010, probably the result of a combination of anthropogenic and environmental factors. One possible contributor to this decline is Ichthyophonus , a mesomycetozoan parasite that has previously been implicated in significant losses of fish, including Chinook salmon. A multiyear epidemiological study of ichthyophoniasis in the Yukon River revealed that disease prevalence and Chinook salmon population abundance increased and decreased simultaneously (i.e., were concordant) from 1999 to 2010. The two values rose and fell synchronously 91% of the time for female Chinook salmon and 82% of the time for males; however, there was no significant correlation between Ichthyophonus prevalence and population abundance. This synchronicity might be explained by a single factor, such as a prey item that is critical to Chinook salmon survival as well as a source of Ichthyophonus infection. The host&ndash;parasite relationship between Ichthyophonus and migrating Chinook salmon from 2004 to 2010 was similar to that reported for the previous 5 years. During 2004&ndash;2010, overall disease prevalence was significantly higher among females (21%) than among males (8%), increased linearly with fish length for both males and females, and increased in both sexes as the fish progressed upriver. These regularly occurring features of host&ndash;parasite dynamics confirm a stable base of transmission for Ichthyophonus . However, from 2003 to 2010, disease prevalence decreased from 30% to just 8% in males and from 45% to 9% in females, paralleling a similar decline in Chinook salmon abundance during the same period. These findings may help clarify questions regarding the complex host&ndash;parasite dynamics that occur in marine species such as herrings Clupea spp., which have less well-defined population structures.

Alaska

Distal facies variability within the Upper Triassic part of the Otuk Formation in northern Alaska

The Triassic-Jurassic Otuk Formation is a potentially important source rock in allochthonous structural positions in the northern foothills of the Brooks Range in the North Slope of Alaska. This study focuses on three localities of the Upper Triassic (Norian) limestone member, which form a present-day, 110-km-long, east-west transect in the central Brooks Range. All three sections are within the structurally lowest Endicott Mountain allochthon and are interpreted to have been deposited along a marine outer shelf with a ramp geometry. The uppermost limestone member of the Otuk was chosen for this study in order to better understand lateral and vertical variability within carbonate source rocks, to aid prediction of organic richness, and ultimately, to evaluate the potential for these units to act as continuous (or unconventional) reservoirs. At each locality, 1 to 4 m sections of the limestone member were measured and sampled in detail to capture fine-scale features. Hand sample and thin section descriptions reveal four major microfacies in the study area, and one diagenetically recrystallized microfacies. Microfacies 1 and 2 are interpreted to represent redeposition of material by downslope transport, whereas microfacies 3 and 4 have high total organic carbon (TOC) values and are classified as primary depositional organofacies. Microfacies 3 is interpreted to have been deposited under primarily high productivity conditions, with high concentrations of radiolarian tests. Microfacies 4 was deposited under the lowest relative-oxygen conditions, but abundant thin bivalve shells indicate that the sediment-water interface was probably not anoxic. The Otuk Formation is interpreted to have been deposited outboard of a southwest-facing ramp margin, with the location of the three limestone outcrops likely in relatively close proximity during deposition. All three sections have evidence of transported material, implying that the Triassic Alaskan Basin was not a low-energy, deep-water setting, but rather a dynamic system with intermittent, yet significant, downslope flow. Upwelling played an important role in the small-scale vertical variability in microfacies. The zone of upwelling and resultant oxygen-minimum zone may have migrated across the ramp during fourth- or fifth-order sea-level changes.

Alaska

Local variability but landscape stability in coral reef communities following repeated hurricane impacts

Coral reef community structure has remained remarkably stable over a 10 yr period within a small protected marine area despite repeated hurricane impacts. Local community dynamics have been highly variable, however. Sites that were destroyed by disease in the 1970s are showing little or no recovery, while sites less than a kilometre away that were devastated by Hurricane Hugo in 1989 are recovering well. Strong coral recruitment has occurred in shallow, exposed areas that showed the greatest hurricane impacts, and these areas are now more species rich than in 1988, although coral cover has not reached pre-hurricane levels. Coral colony survivorship has been high throughout most of the study area. Partial mortality rates were elevated for several years following Hurricane Hugo, but significant whole coral-head mortality only occurred during periods with hurricane impacts and only at the most exposed sites. Overall, the coral community has proved resilient to closely repeated major hurricane impacts. From a single case study we cannot attribute this resilience to the relatively low level of human impacts, but grazing fish populations have apparently remained high enough to keep macroalgae in check despite the mass mortality of the herbivore Diadema antillarum in the 1980s.

St. Croix

Inundation exposure assessment for Majuro Atoll, Republic of the Marshall Islands using a high-accuracy digital elevation model

Majuro Atoll in the central Pacific has high coastal vulnerability due to low-lying islands, rising sea level, high wave events, eroding shorelines, a dense population center, and limited freshwater resources. Land elevation is the primary geophysical variable that determines exposure to inundation in coastal settings. Accordingly, coastal elevation data (with accuracy information) are critical for assessments of inundation exposure. Previous research has demonstrated the importance of using high-accuracy elevation data and rigorously accounting for uncertainty in inundation assessments. A quantitative analysis of inundation exposure was conducted for Majuro Atoll, including accounting for the cumulative vertical uncertainty from the input digital elevation model (DEM) and datum transformation. The project employed a recently produced and validated DEM derived from structure-from-motion processing of very-high-resolution aerial imagery. Areas subject to marine inundation (direct hydrologic connection to the ocean) and low-lying lands (disconnected hydrologically from the ocean) were mapped and characterized for three inundation levels using deterministic and probabilistic methods. At the highest water level modeled (3.75 ft, or 1.143 m), more than 34% of the atoll study area is likely to be exposed to inundation (68% chance or greater), while more than 20% of the atoll is extremely likely to be exposed (95% chance or greater). The study demonstrates the substantial value of a high-accuracy DEM for assessing inundation exposure of low-relief islands and the enhanced information from accounting for vertical uncertainty.

Majuro Atoll

Geotechnical engineering for ocean waste disposal. An introduction

As members of multidisciplinary teams, geotechnical engineers apply quantitative knowledge about the behavior of earth materials toward designing systems for disposing of wastes in the oceans and monitoring waste disposal sites. In dredge material disposal, geotechnical engineers assist in selecting disposal equipment, predict stable characteristics of dredge mounds, design mound caps, and predict erodibility of the material. In canister disposal, geotechnical engineers assist in specifying canister configurations, predict penetration depths into the seafloor, and predict and monitor canister performance following emplacement. With sewage outfalls, geotechnical engineers design foundation and anchor elements, estimate scour potential around the outfalls, and determine the stability of deposits made up of discharged material. With landfills, geotechnical engineers evaluate the stability and erodibility of margins and estimate settlement and cracking of the landfill mass. Geotechnical engineers also consider the influence that pollutants have on the engineering behavior of marine sediment and the extent to which changes in behavior affect the performance of structures founded on the sediment. In each of these roles, careful application of geotechnical engineering principles can contribute toward more efficient and environmentally safe waste disposal operations.

Conference Paper

A review of literature for gray and harbor seals

Climate change is impacting marine species, causing shifts in occurrence, distribution, and phenology, which can ultimately effect ecosystem structure and functioning (Parmesan & Yohe 2003; Burrows et al. 2011). The study of the timing of recurring biological events throughout an organism’s life is known as phenology (Parmesan & Yohe 2003). The way organisms respond to climate change through altered timing offers insight into their sensitivity and adaptability (Parmesan & Yohe 2003). To gain an understanding of pinniped vulnerability to climate change, specifically through changes in phenology, a comprehensive literature search was conducted using several online databases (e.g., Web of Science, Google Scholar and PubMed). Combinations of relevant terms were searched in order to find studies pertaining to the life history of two regionally important pinniped species: the gray seal (Halichoerus grypus) and the harbor seal (Phoca vitulina). Although special attention was given to studies conducted in the Northwestern Atlantic region, publications giving information on populations in other parts of the world provided important proxy information. Keyword searches were conducted in Web of Science and Google Scholar and represent the published literature through 2017. The remainder of the publications found were cited in the literature returned from the two searches. This document provides an annotated bibliography organized by species (gray and harbor seals) and region, with topical sections for important attributes (e.g. foraging). The focus of this search was for the Gulf of Maine region, but other relevant information yielded by the literature search is presented in order of approximate distance from the focal area.

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